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Rosetta 3 - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
0
6,454 by admin
Fri, 2015-09-04 16:17
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
0
15 by a-eatemadi@razi...
Wed, 2017-11-15 04:19
Hot topic ddG calculation
by malkeet.singh » Sun, 2017-06-25 07:53
32
1,538 by malkeet.singh
Tue, 2017-11-14 04:33
Normal topic UnfoldedStateEnergyCalculator MPI Error
by colin.walsh.brown » Mon, 2017-11-13 09:43
1
16 by smlewis
Mon, 2017-11-13 10:43
Normal topic H3 modeling takes 10 days more?
by jessye » Fri, 2017-10-27 03:11
7
137 by jessye
Fri, 2017-11-03 20:15
Normal topic Rosetta RNA denovo huge memory usage (probable memory leak)
by cdegut » Mon, 2017-10-30 16:41
5
82 by cdegut
Fri, 2017-11-03 05:50
Normal topic Abinitio error: std::out_of_range: basic_string
by Harley Worthy » Tue, 2017-10-31 15:20
1
40 by Harley Worthy
Thu, 2017-11-02 08:53
Hot topic multiple template homolgy modelling
by pdbb » Tue, 2012-10-30 08:12
47
20,656 by Derek Smith
Mon, 2017-10-23 22:00
Normal topic Error when running Remodel with EnzDes constraint file to extend c-terminal
by Jeffrey_Chen » Thu, 2017-01-19 06:20
4
609 by dfcoelho
Tue, 2017-10-17 11:52
Normal topic Ligand docking cannot open the protein file
by swarekwood » Tue, 2017-10-17 08:17
1
43 by rmoretti
Tue, 2017-10-17 09:03
Normal topic Surface Docking Crash (continued)
by dkozuch » Tue, 2017-09-12 06:18
1
69 by rmoretti
Tue, 2017-10-10 10:08
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
121 by rmoretti
Tue, 2017-10-10 10:05
Normal topic How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI
by kingljy » Sun, 2017-09-24 18:37
3
128 by rmoretti
Tue, 2017-10-10 09:58
Normal topic dssp
by MA » Thu, 2017-10-05 09:34
1
55 by rmoretti
Tue, 2017-10-10 09:54
Normal topic Dock two domains using topology broker
by sn » Thu, 2017-10-05 17:07
0
58 by sn
Thu, 2017-10-05 17:07
Normal topic problems with generating the params file
by dyu » Thu, 2017-09-28 13:34
2
91 by dyu
Thu, 2017-09-28 18:54
Normal topic Place ligand in a pocket
by sn » Fri, 2017-09-15 12:53
1
60 by rmoretti
Fri, 2017-09-15 13:11
Normal topic Surface Docking Application Crash
by dkozuch » Sat, 2017-09-02 18:32
11
361 by dkozuch
Sat, 2017-09-09 08:51
Hot topic Folppy Tail and Constraints
by sfulad2 » Fri, 2017-05-12 12:23
15
604 by smlewis
Fri, 2017-09-08 09:16
Normal topic Using different number of 9-mers (UPDATED)
by JadAbbass » Mon, 2017-08-28 07:20
1
107 by rmoretti
Mon, 2017-09-04 10:33
Normal topic Ligand Docking with Rosetta Scripts memory problem
by Swillard » Thu, 2017-08-17 14:59
5
221 by rmoretti
Mon, 2017-09-04 10:10
Normal topic Relax is resulting in a Segmentation Fault
by brspurri » Thu, 2017-08-24 18:46
3
181 by brspurri
Sat, 2017-08-26 07:08
Normal topic -loops:fa_input not found in command line top-level context
by swarekwood » Thu, 2017-08-24 03:15
2
134 by swarekwood
Fri, 2017-08-25 05:08
Normal topic Allow region of protein to move in a certain direction
by sn » Wed, 2017-08-23 17:07
3
209 by rmoretti
Thu, 2017-08-24 11:00
Normal topic extract_pdb application parse error with silent file
by staciekim » Tue, 2017-08-22 12:39
5
239 by rmoretti
Thu, 2017-08-24 08:19
Normal topic Running snugdock was crashed by "segmentation fault"
by Sunyp_IM » Mon, 2017-08-21 05:03
3
158 by rmoretti
Tue, 2017-08-22 09:03
Normal topic The problems on pdb renumbering
by Sunyp_IM » Sun, 2017-08-20 06:39
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109 by Sunyp_IM
Sun, 2017-08-20 06:39
Normal topic Ligand params file proton_chi parameters
by staciekim » Thu, 2017-08-17 14:50
2
137 by staciekim
Thu, 2017-08-17 17:06
Normal topic Getting error with Rosetta "antibody.linuxgccrelease" command
by Sunyp_IM » Mon, 2017-08-07 19:40
1
143 by smlewis
Tue, 2017-08-15 23:19
Normal topic Parse error while reading in XML file in ROSETTA Scripts
by rweisse » Fri, 2014-08-29 03:24
5
2,670 by a-eatemadi@razi...
Sun, 2017-08-06 03:49
Normal topic MPdocking I_sc
by jrcf » Mon, 2017-07-31 16:10
1
99 by rmoretti
Thu, 2017-08-03 09:29
Normal topic Error src/core/scoring/MembraneTopology.cc line: 139
by Daniel Hall » Thu, 2017-07-13 04:58
6
388 by rmoretti
Tue, 2017-07-18 09:00
Normal topic rosetta app
by MA » Wed, 2017-07-05 06:52
5
318 by smlewis
Tue, 2017-07-11 07:53
Normal topic SnugDocking a VHH:antigen complex possible?
by David Weis » Thu, 2017-02-16 05:57
7
808 by rmoretti
Thu, 2017-07-06 13:00
Normal topic conformational sampling of multi domain protein
by dhirajks » Tue, 2017-07-04 11:20
4
254 by jrporter
Wed, 2017-07-05 06:30
Normal topic Converting -patch replonly residues to original sequence
by subha » Mon, 2017-06-26 13:39
8
434 by smlewis
Tue, 2017-07-04 15:42
Normal topic Packstat application output
by Vedasheersh » Mon, 2017-07-03 02:45
1
143 by rmoretti
Mon, 2017-07-03 09:17
Normal topic How to minimize the decoys obtained from backrub?
by Vedasheersh » Wed, 2017-06-14 10:26
5
355 by SenyorDrew
Fri, 2017-06-30 09:47
Hot topic Errors in Getting Erraser to run
by belousoff » Thu, 2017-06-01 16:13
15
753 by belousoff
Mon, 2017-06-26 16:46
Normal topic Error Interface analyser
by jrcf » Thu, 2017-06-22 12:55
1
158 by smlewis
Thu, 2017-06-22 13:31
Normal topic Up to date Vall database
by JadAbbass » Sat, 2013-06-29 10:35
3
1,962 by rmoretti
Tue, 2017-06-20 09:02
Normal topic domain:domain fusion
by felipet » Thu, 2017-06-15 13:13
5
336 by felipet
Fri, 2017-06-16 11:42
Normal topic error extracting PDB from silent from AbinitioRelax with constraints
by attesor » Wed, 2017-06-14 04:15
2
178 by smlewis
Fri, 2017-06-16 07:35
Normal topic How to run simulations with non-canonical amino acids?
by Denise » Thu, 2017-06-08 07:50
4
331 by Denise
Thu, 2017-06-15 04:26
Normal topic How to find cluster core structure?
by assignfit » Thu, 2012-03-29 20:35
7
1,955 by attesor
Wed, 2017-06-14 07:32
Hot topic rosettaCM not recognizing Mn atom
by banshee » Mon, 2016-09-12 23:33
18
1,751 by smlewis
Mon, 2017-06-12 06:44
Normal topic Error with -patch_selectors
by subha » Tue, 2017-06-06 14:40
4
280 by subha
Fri, 2017-06-09 15:42
Normal topic Including waters in RosettaCM
by ajkal » Thu, 2017-04-27 11:59
9
756 by rpavlov
Tue, 2017-06-06 11:45
Normal topic Cartesian-space refinement
by sjyang7 » Wed, 2017-05-31 19:34
5
433 by sjyang7
Sat, 2017-06-03 06:09
Normal topic Adding water interactions when docking a ligand with Rosetta 3.7.
by brspurri » Thu, 2017-06-01 09:37
2
239 by brspurri
Thu, 2017-06-01 10:58
Hot topic a trouble during floppytail modeling
by chenchaozhao » Tue, 2011-03-15 03:59
39
12,309 by smlewis
Thu, 2017-06-01 10:02
Normal topic sequence design to enhance Fc / Fc-g Receptor binding
by jarod » Tue, 2017-05-23 09:00
1
184 by jadolfbr
Thu, 2017-06-01 10:00
Normal topic RosettaCM -weights, fragments and relax
by jsv » Tue, 2017-05-09 10:20
5
519 by rmoretti
Thu, 2017-06-01 08:52
Normal topic Partial Active Site Design for a Novel Substrate
by Derek » Wed, 2017-05-17 19:41
1
186 by rmoretti
Thu, 2017-05-18 13:51
Normal topic Error in a new docking
by jrcf » Wed, 2017-05-17 19:26
1
249 by everyday847
Wed, 2017-05-17 20:03
Normal topic Ligand Docking with RosettaScripts gives a ParsedProtocol exception
by brspurri » Sun, 2017-05-14 17:51
2
281 by brspurri
Mon, 2017-05-15 11:48
Normal topic Regarding the efficiency of the new low resolution ligand-docking movement “Transform”.
by Martin Floor » Mon, 2017-05-15 09:19
2
222 by Martin Floor
Mon, 2017-05-15 11:13
Normal topic Model two domain protein
by sn » Sat, 2017-05-06 13:21
1
189 by rmoretti
Mon, 2017-05-15 08:54
Normal topic weights for pH_protocol
by fmerino » Wed, 2017-04-26 07:14
1
191 by rmoretti
Thu, 2017-04-27 07:10
Normal topic New CSRosetta toolbox
by sn » Mon, 2017-04-24 12:42
3
305 by rmoretti
Tue, 2017-04-25 06:41
Normal topic Fast relax not working
by eyong123 » Fri, 2017-04-21 06:06
1
189 by rmoretti
Fri, 2017-04-21 07:41
Normal topic How to add a residue to one chain of an existing structure?
by sn » Mon, 2017-04-17 09:34
2
275 by sn
Thu, 2017-04-20 21:43
Normal topic Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM
by ajkal » Fri, 2017-04-14 08:44
3
369 by rmoretti
Thu, 2017-04-20 13:59
Normal topic Threading a sequence onto a template with ligands/metal ions included
by ajkal » Wed, 2017-04-19 11:53
2
305 by rmoretti
Thu, 2017-04-20 13:57
Normal topic Camelid antibody (VHH) modelling
by Ayoub Ksouri » Tue, 2017-04-04 22:52
13
1,250 by Ayoub Ksouri
Wed, 2017-04-19 15:16
Normal topic Rosetta_scripts error, Got some signal... It is:6
by jhm13c » Fri, 2017-04-14 14:05
1
177 by rmoretti
Sat, 2017-04-15 13:30
Normal topic Docking Prepack protocol working or not ?
by MJG » Mon, 2017-04-03 08:02
4
405 by MJG
Tue, 2017-04-04 23:59
Normal topic Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring
by brspurri » Wed, 2017-03-29 13:19
0
316 by brspurri
Wed, 2017-03-29 13:19
Normal topic Relax structure with metal cofactors
by h_trasatti » Tue, 2017-03-14 14:04
2
346 by rmoretti
Tue, 2017-03-28 08:51
Normal topic score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059'
by sn » Fri, 2017-03-24 12:26
1
199 by rmoretti
Fri, 2017-03-24 13:39
Normal topic Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB"
by brspurri » Fri, 2017-03-24 10:52
3
402 by brspurri
Fri, 2017-03-24 11:35
Normal topic conway2016 correction on beta-nov15?
by attesor » Wed, 2017-03-15 05:26
5
580 by attesor
Thu, 2017-03-16 01:21
Normal topic Membrane Abinitio modeling
by bharat_46010 » Mon, 2017-03-13 22:39
0
175 by bharat_46010
Mon, 2017-03-13 22:39
Normal topic Rosetta ScriptsFeatures Reporter issue
by David Weis » Sun, 2017-03-12 08:19
5
533 by David Weis
Mon, 2017-03-13 10:59
Normal topic Remodel with residue constraints
by sn » Fri, 2017-03-10 01:40
2
323 by rmoretti
Mon, 2017-03-13 08:01
Normal topic Ensemble docking causes segmentation fault 11
by David Weis » Mon, 2017-03-06 14:30
2
335 by David Weis
Mon, 2017-03-13 06:40
Normal topic KeyError: 'subject-id' in antibody modelling
by bogac » Mon, 2017-03-06 02:00
2
377 by bogac
Tue, 2017-03-07 02:11
Normal topic Loop modeling/closure for many structures
by sn » Mon, 2017-03-06 11:25
1
221 by rmoretti
Mon, 2017-03-06 12:39
Normal topic Perform MPI relax with movemap files
by sn » Sun, 2017-03-05 13:18
3
384 by sn
Mon, 2017-03-06 10:03
Normal topic mr_protocols with symmetry and ligand
by jhm13c » Mon, 2017-02-27 11:59
4
470 by jhm13c
Thu, 2017-03-02 12:01
Normal topic How tu use Delta filter's relax_mover
by pocin » Sun, 2017-02-19 05:21
3
366 by rmoretti
Wed, 2017-03-01 13:10
Normal topic Interface Analyzer Segmentation Fault
by h_trasatti » Tue, 2017-02-21 12:48
1
301 by smlewis
Tue, 2017-02-21 14:10
Normal topic Docking prepack vs. relax
by David Weis » Tue, 2017-02-21 05:37
1
255 by smlewis
Tue, 2017-02-21 07:58
Normal topic Re: Glutamic acid protonation
by bharat_46010 » Fri, 2017-02-10 03:08
4
595 by rmoretti
Mon, 2017-02-20 08:09
Normal topic Fragment library (vall file) from Robetta?
by alex » Sun, 2017-02-19 08:12
0
242 by alex
Sun, 2017-02-19 08:12
Normal topic Protein Design
by ac.research » Wed, 2017-02-15 19:25
1
339 by cdbahl
Sat, 2017-02-18 13:02
Normal topic Docking membrane ions and water
by jrcf » Tue, 2017-02-07 15:47
3
497 by smlewis
Wed, 2017-02-15 07:43
Normal topic Snugdock_error
by luicui » Thu, 2017-02-09 21:06
1
229 by smlewis
Thu, 2017-02-09 21:50
Normal topic Antibody Modelling
by luicui » Mon, 2017-01-23 21:30
1
334 by smlewis
Mon, 2017-02-06 20:46
Normal topic Rosetta failed in making score.fsc
by josdee » Sun, 2017-02-05 21:58
1
259 by smlewis
Mon, 2017-02-06 06:57
Normal topic RosettaCM input file for running on Stampede
by smathersc » Wed, 2017-01-18 16:12
3
483 by rmoretti
Thu, 2017-02-02 09:02
Normal topic Packstat score in InterfaceAnalyzer
by Vedasheersh » Fri, 2017-01-27 06:21
2
365 by smlewis
Fri, 2017-01-27 07:20
Normal topic Abinitio doesn't run but does not give output or error
by Irving » Fri, 2016-10-28 10:04
6
924 by rmoretti
Mon, 2017-01-23 08:52
Normal topic RosettaCM
by DmitriiN » Sun, 2017-01-22 17:52
3
453 by smlewis
Mon, 2017-01-23 06:26
Normal topic Snugdock_input
by luicui » Wed, 2017-01-18 16:48
5
581 by smlewis
Fri, 2017-01-20 08:14
Normal topic RosettaCM Tutorials
by smathersc » Wed, 2017-01-11 15:59
5
743 by rmoretti
Thu, 2017-01-19 09:11
Normal topic Domain insertion with Non-CAA
by mwfranklin » Mon, 2017-01-16 12:30
0
300 by mwfranklin
Mon, 2017-01-16 12:30
Normal topic comparative modeling of a homodimer
by banshee » Mon, 2017-01-09 18:34
1
336 by rmoretti
Wed, 2017-01-11 13:00
Normal topic ligand docking, how to combine some silent.out files into a silent_all.out file
by Ryhon Wang » Fri, 2013-12-06 01:53
6
2,490 by rmoretti
Wed, 2017-01-11 12:53
Normal topic Using abinition to predict a new (previously unsolved) structure.
by ac.research » Mon, 2017-01-09 00:59
0
233 by ac.research
Mon, 2017-01-09 00:59

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