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Rosetta 3 - Applications
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FAQ by admin » Mon, 2010-08-30 04:18 |
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by admin Fri, 2015-09-04 16:17 |
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How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI by kingljy » Sun, 2017-09-24 18:37 |
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by rmoretti Mon, 2017-09-25 09:56 |
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multiple template homolgy modelling by pdbb » Tue, 2012-10-30 08:12 |
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19,159 |
by Derek Smith Tue, 2017-09-19 22:25 |
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Filter based on ligand_is_touching by Swillard » Mon, 2017-09-11 19:00 |
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by Swillard Sun, 2017-09-17 09:12 |
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Place ligand in a pocket by sn » Fri, 2017-09-15 12:53 |
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by rmoretti Fri, 2017-09-15 13:11 |
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Surface Docking Crash (continued) by dkozuch » Tue, 2017-09-12 06:18 |
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by dkozuch Tue, 2017-09-12 06:18 |
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Surface Docking Application Crash by dkozuch » Sat, 2017-09-02 18:32 |
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by dkozuch Sat, 2017-09-09 08:51 |
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Folppy Tail and Constraints by sfulad2 » Fri, 2017-05-12 12:23 |
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by smlewis Fri, 2017-09-08 09:16 |
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Using different number of 9-mers (UPDATED) by JadAbbass » Mon, 2017-08-28 07:20 |
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by rmoretti Mon, 2017-09-04 10:33 |
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Ligand Docking with Rosetta Scripts memory problem by Swillard » Thu, 2017-08-17 14:59 |
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by rmoretti Mon, 2017-09-04 10:10 |
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ddG calculation by malkeet.singh » Sun, 2017-06-25 07:53 |
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by malkeet.singh Tue, 2017-08-29 09:16 |
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Relax is resulting in a Segmentation Fault by brspurri » Thu, 2017-08-24 18:46 |
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by brspurri Sat, 2017-08-26 07:08 |
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-loops:fa_input not found in command line top-level context by swarekwood » Thu, 2017-08-24 03:15 |
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by swarekwood Fri, 2017-08-25 05:08 |
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Allow region of protein to move in a certain direction by sn » Wed, 2017-08-23 17:07 |
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by rmoretti Thu, 2017-08-24 11:00 |
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extract_pdb application parse error with silent file by staciekim » Tue, 2017-08-22 12:39 |
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by rmoretti Thu, 2017-08-24 08:19 |
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Running snugdock was crashed by "segmentation fault" by Sunyp_IM » Mon, 2017-08-21 05:03 |
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by rmoretti Tue, 2017-08-22 09:03 |
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The problems on pdb renumbering by Sunyp_IM » Sun, 2017-08-20 06:39 |
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by Sunyp_IM Sun, 2017-08-20 06:39 |
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Ligand params file proton_chi parameters by staciekim » Thu, 2017-08-17 14:50 |
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by staciekim Thu, 2017-08-17 17:06 |
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Getting error with Rosetta "antibody.linuxgccrelease" command by Sunyp_IM » Mon, 2017-08-07 19:40 |
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by smlewis Tue, 2017-08-15 23:19 |
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Parse error while reading in XML file in ROSETTA Scripts by rweisse » Fri, 2014-08-29 03:24 |
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2,455 |
by a-eatemadi@razi... Sun, 2017-08-06 03:49 |
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MPdocking I_sc by jrcf » Mon, 2017-07-31 16:10 |
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by rmoretti Thu, 2017-08-03 09:29 |
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Error src/core/scoring/MembraneTopology.cc line: 139 by Daniel Hall » Thu, 2017-07-13 04:58 |
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by rmoretti Tue, 2017-07-18 09:00 |
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rosetta app by MA » Wed, 2017-07-05 06:52 |
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by smlewis Tue, 2017-07-11 07:53 |
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SnugDocking a VHH:antigen complex possible? by David Weis » Thu, 2017-02-16 05:57 |
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by rmoretti Thu, 2017-07-06 13:00 |
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conformational sampling of multi domain protein by dhirajks » Tue, 2017-07-04 11:20 |
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by jrporter Wed, 2017-07-05 06:30 |
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Converting -patch replonly residues to original sequence by subha » Mon, 2017-06-26 13:39 |
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by smlewis Tue, 2017-07-04 15:42 |
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Packstat application output by Vedasheersh » Mon, 2017-07-03 02:45 |
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by rmoretti Mon, 2017-07-03 09:17 |
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How to minimize the decoys obtained from backrub? by Vedasheersh » Wed, 2017-06-14 10:26 |
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by SenyorDrew Fri, 2017-06-30 09:47 |
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Errors in Getting Erraser to run by belousoff » Thu, 2017-06-01 16:13 |
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by belousoff Mon, 2017-06-26 16:46 |
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Error Interface analyser by jrcf » Thu, 2017-06-22 12:55 |
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by smlewis Thu, 2017-06-22 13:31 |
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Up to date Vall database by JadAbbass » Sat, 2013-06-29 10:35 |
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1,837 |
by rmoretti Tue, 2017-06-20 09:02 |
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domain:domain fusion by felipet » Thu, 2017-06-15 13:13 |
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by felipet Fri, 2017-06-16 11:42 |
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error extracting PDB from silent from AbinitioRelax with constraints by attesor » Wed, 2017-06-14 04:15 |
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by smlewis Fri, 2017-06-16 07:35 |
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How to run simulations with non-canonical amino acids? by Denise » Thu, 2017-06-08 07:50 |
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by Denise Thu, 2017-06-15 04:26 |
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How to find cluster core structure? by assignfit » Thu, 2012-03-29 20:35 |
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1,788 |
by attesor Wed, 2017-06-14 07:32 |
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rosettaCM not recognizing Mn atom by banshee » Mon, 2016-09-12 23:33 |
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1,327 |
by smlewis Mon, 2017-06-12 06:44 |
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Error with -patch_selectors by subha » Tue, 2017-06-06 14:40 |
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by subha Fri, 2017-06-09 15:42 |
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Including waters in RosettaCM by ajkal » Thu, 2017-04-27 11:59 |
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by rpavlov Tue, 2017-06-06 11:45 |
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Cartesian-space refinement by sjyang7 » Wed, 2017-05-31 19:34 |
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by sjyang7 Sat, 2017-06-03 06:09 |
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Adding water interactions when docking a ligand with Rosetta 3.7. by brspurri » Thu, 2017-06-01 09:37 |
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by brspurri Thu, 2017-06-01 10:58 |
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a trouble during floppytail modeling by chenchaozhao » Tue, 2011-03-15 03:59 |
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11,388 |
by smlewis Thu, 2017-06-01 10:02 |
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sequence design to enhance Fc / Fc-g Receptor binding by jarod » Tue, 2017-05-23 09:00 |
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by jadolfbr Thu, 2017-06-01 10:00 |
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RosettaCM -weights, fragments and relax by jsv » Tue, 2017-05-09 10:20 |
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by rmoretti Thu, 2017-06-01 08:52 |
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Partial Active Site Design for a Novel Substrate by Derek » Wed, 2017-05-17 19:41 |
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by rmoretti Thu, 2017-05-18 13:51 |
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Error in a new docking by jrcf » Wed, 2017-05-17 19:26 |
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by everyday847 Wed, 2017-05-17 20:03 |
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Ligand Docking with RosettaScripts gives a ParsedProtocol exception by brspurri » Sun, 2017-05-14 17:51 |
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by brspurri Mon, 2017-05-15 11:48 |
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Regarding the efficiency of the new low resolution ligand-docking movement “Transform”. by Martin Floor » Mon, 2017-05-15 09:19 |
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by Martin Floor Mon, 2017-05-15 11:13 |
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Model two domain protein by sn » Sat, 2017-05-06 13:21 |
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by rmoretti Mon, 2017-05-15 08:54 |
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weights for pH_protocol by fmerino » Wed, 2017-04-26 07:14 |
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by rmoretti Thu, 2017-04-27 07:10 |
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New CSRosetta toolbox by sn » Mon, 2017-04-24 12:42 |
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by rmoretti Tue, 2017-04-25 06:41 |
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Fast relax not working by eyong123 » Fri, 2017-04-21 06:06 |
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by rmoretti Fri, 2017-04-21 07:41 |
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How to add a residue to one chain of an existing structure? by sn » Mon, 2017-04-17 09:34 |
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by sn Thu, 2017-04-20 21:43 |
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Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM by ajkal » Fri, 2017-04-14 08:44 |
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by rmoretti Thu, 2017-04-20 13:59 |
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Threading a sequence onto a template with ligands/metal ions included by ajkal » Wed, 2017-04-19 11:53 |
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by rmoretti Thu, 2017-04-20 13:57 |
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Camelid antibody (VHH) modelling by Ayoub Ksouri » Tue, 2017-04-04 22:52 |
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by Ayoub Ksouri Wed, 2017-04-19 15:16 |
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Rosetta_scripts error, Got some signal... It is:6 by jhm13c » Fri, 2017-04-14 14:05 |
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by rmoretti Sat, 2017-04-15 13:30 |
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Docking Prepack protocol working or not ? by MJG » Mon, 2017-04-03 08:02 |
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by MJG Tue, 2017-04-04 23:59 |
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Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring by brspurri » Wed, 2017-03-29 13:19 |
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by brspurri Wed, 2017-03-29 13:19 |
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Relax structure with metal cofactors by h_trasatti » Tue, 2017-03-14 14:04 |
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by rmoretti Tue, 2017-03-28 08:51 |
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score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059' by sn » Fri, 2017-03-24 12:26 |
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by rmoretti Fri, 2017-03-24 13:39 |
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Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB" by brspurri » Fri, 2017-03-24 10:52 |
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by brspurri Fri, 2017-03-24 11:35 |
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conway2016 correction on beta-nov15? by attesor » Wed, 2017-03-15 05:26 |
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by attesor Thu, 2017-03-16 01:21 |
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Membrane Abinitio modeling by bharat_46010 » Mon, 2017-03-13 22:39 |
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by bharat_46010 Mon, 2017-03-13 22:39 |
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Rosetta ScriptsFeatures Reporter issue by David Weis » Sun, 2017-03-12 08:19 |
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by David Weis Mon, 2017-03-13 10:59 |
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Remodel with residue constraints by sn » Fri, 2017-03-10 01:40 |
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by rmoretti Mon, 2017-03-13 08:01 |
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Ensemble docking causes segmentation fault 11 by David Weis » Mon, 2017-03-06 14:30 |
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by David Weis Mon, 2017-03-13 06:40 |
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KeyError: 'subject-id' in antibody modelling by bogac » Mon, 2017-03-06 02:00 |
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by bogac Tue, 2017-03-07 02:11 |
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Loop modeling/closure for many structures by sn » Mon, 2017-03-06 11:25 |
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by rmoretti Mon, 2017-03-06 12:39 |
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Perform MPI relax with movemap files by sn » Sun, 2017-03-05 13:18 |
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by sn Mon, 2017-03-06 10:03 |
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mr_protocols with symmetry and ligand by jhm13c » Mon, 2017-02-27 11:59 |
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by jhm13c Thu, 2017-03-02 12:01 |
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How tu use Delta filter's relax_mover by pocin » Sun, 2017-02-19 05:21 |
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by rmoretti Wed, 2017-03-01 13:10 |
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Interface Analyzer Segmentation Fault by h_trasatti » Tue, 2017-02-21 12:48 |
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by smlewis Tue, 2017-02-21 14:10 |
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Docking prepack vs. relax by David Weis » Tue, 2017-02-21 05:37 |
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by smlewis Tue, 2017-02-21 07:58 |
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Re: Glutamic acid protonation by bharat_46010 » Fri, 2017-02-10 03:08 |
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by rmoretti Mon, 2017-02-20 08:09 |
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Fragment library (vall file) from Robetta? by alex » Sun, 2017-02-19 08:12 |
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by alex Sun, 2017-02-19 08:12 |
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Protein Design by ac.research » Wed, 2017-02-15 19:25 |
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by cdbahl Sat, 2017-02-18 13:02 |
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Docking membrane ions and water by jrcf » Tue, 2017-02-07 15:47 |
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by smlewis Wed, 2017-02-15 07:43 |
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Snugdock_error by luicui » Thu, 2017-02-09 21:06 |
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by smlewis Thu, 2017-02-09 21:50 |
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Antibody Modelling by luicui » Mon, 2017-01-23 21:30 |
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by smlewis Mon, 2017-02-06 20:46 |
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Rosetta failed in making score.fsc by josdee » Sun, 2017-02-05 21:58 |
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by smlewis Mon, 2017-02-06 06:57 |
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RosettaCM input file for running on Stampede by smathersc » Wed, 2017-01-18 16:12 |
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by rmoretti Thu, 2017-02-02 09:02 |
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Packstat score in InterfaceAnalyzer by Vedasheersh » Fri, 2017-01-27 06:21 |
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by smlewis Fri, 2017-01-27 07:20 |
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Error when running Remodel with EnzDes constraint file to extend c-terminal by Jeffrey_Chen » Thu, 2017-01-19 06:20 |
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by mwfranklin Mon, 2017-01-23 11:04 |
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Abinitio doesn't run but does not give output or error by Irving » Fri, 2016-10-28 10:04 |
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by rmoretti Mon, 2017-01-23 08:52 |
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RosettaCM by DmitriiN » Sun, 2017-01-22 17:52 |
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by smlewis Mon, 2017-01-23 06:26 |
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Snugdock_input by luicui » Wed, 2017-01-18 16:48 |
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by smlewis Fri, 2017-01-20 08:14 |
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RosettaCM Tutorials by smathersc » Wed, 2017-01-11 15:59 |
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by rmoretti Thu, 2017-01-19 09:11 |
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Domain insertion with Non-CAA by mwfranklin » Mon, 2017-01-16 12:30 |
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by mwfranklin Mon, 2017-01-16 12:30 |
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comparative modeling of a homodimer by banshee » Mon, 2017-01-09 18:34 |
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by rmoretti Wed, 2017-01-11 13:00 |
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ligand docking, how to combine some silent.out files into a silent_all.out file by Ryhon Wang » Fri, 2013-12-06 01:53 |
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2,290 |
by rmoretti Wed, 2017-01-11 12:53 |
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Using abinition to predict a new (previously unsolved) structure. by ac.research » Mon, 2017-01-09 00:59 |
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by ac.research Mon, 2017-01-09 00:59 |
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ArchiveManager -- spinning down by Marius1987 » Fri, 2016-12-23 03:10 |
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by smlewis Fri, 2016-12-23 07:04 |
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Altering substrate specificity by bp » Thu, 2016-12-22 02:45 |
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by bp Thu, 2016-12-22 07:54 |
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How to scan double mutations in RosettaScripts? by msardejani » Mon, 2016-12-12 16:52 |
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by msardejani Mon, 2016-12-12 17:48 |
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Including ab-initio predicted model in fragment library generation by ashu4487 » Thu, 2016-12-08 17:49 |
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by ashu4487 Sun, 2016-12-11 19:03 |
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Design with limited number of aminoacids at given position by sdh_h » Sun, 2016-12-04 03:44 |
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292 |
by smlewis Thu, 2016-12-08 15:50 |
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backrub application, resfile, and pivot_residues by tylerborrman » Tue, 2016-12-06 14:46 |
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by tylerborrman Tue, 2016-12-06 14:46 |
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Ddg_monomer: implementing disulfides by kabol » Wed, 2016-11-30 02:39 |
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293 |
by rmoretti Wed, 2016-11-30 07:46 |
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Should FastRelax be commented out in Calculate_protein_protein_ddg demo? by cossio » Mon, 2016-10-31 12:01 |
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1,730 |
by cossio Mon, 2016-11-21 07:56 |
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FloppyTail options error by DmitriiN » Fri, 2016-11-11 02:54 |
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320 |
by smlewis Fri, 2016-11-11 08:33 |
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