You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
| Topic / Topic starter | Replies | Views |
Last post |
|
|---|---|---|---|---|
|
Sticky:
FAQ by admin » Mon, 2010-08-30 04:18 |
0 |
8,995 |
by admin Fri, 2015-09-04 16:17 |
|
|
Help to understand docking results by rtorquato » Fri, 2022-11-25 12:05 |
0 |
70 |
by rtorquato Fri, 2022-11-25 12:05 |
|
|
Score.sc file showing total score 0 for all protein structures created by aanshi » Wed, 2022-11-23 11:13 |
0 |
232 |
by aanshi Wed, 2022-11-23 11:13 |
|
|
snugdock: constrained backbone by mahendra » Mon, 2022-11-14 02:51 |
0 |
768 |
by mahendra Mon, 2022-11-14 02:51 |
|
|
Ligand Rotamer Control in Macther by Hirbond » Tue, 2022-10-25 13:01 |
0 |
929 |
by Hirbond Wed, 2022-10-26 12:57 |
|
|
Setting pivots points for GenKIC by almeida85 » Tue, 2022-10-25 02:32 |
0 |
892 |
by almeida85 Tue, 2022-10-25 02:32 |
|
|
Small molecule dimer/trimer/etc docking by lukasz » Tue, 2022-10-04 06:49 |
1 |
899 |
by rmoretti Tue, 2022-10-04 07:57 |
|
|
Symmetry definition question by mrconde96 » Sun, 2022-10-02 05:34 |
0 |
686 |
by mrconde96 Sun, 2022-10-02 05:34 |
|
|
Old Knotfind algorithm by Martin Floor » Thu, 2022-09-22 07:28 |
1 |
290 |
by rmoretti Fri, 2022-09-23 09:38 |
|
|
ReplicaDock2.0 demo fails with MPIFileBufJobDistributor: (1) [ ERROR ] by erpannec » Tue, 2022-08-09 05:42 |
4 |
423 |
by erpannec Thu, 2022-09-15 05:17 |
|
|
Prepacking a macrocycle for docking / preserving cyclization by almeida85 » Thu, 2022-09-08 06:54 |
0 |
155 |
by almeida85 Thu, 2022-09-08 06:54 |
|
|
Trehalose by jpfuenzalidawx » Thu, 2022-09-08 00:49 |
0 |
113 |
by jpfuenzalidawx Thu, 2022-09-08 00:49 |
|
|
Macrocycle from a C-terminal amidated peptide by almeida85 » Thu, 2022-08-18 07:53 |
0 |
170 |
by almeida85 Thu, 2022-08-18 07:53 |
|
|
Docking HeparinSulfate to proteins using GlycanDock by GebauerJ » Tue, 2022-08-16 07:44 |
0 |
149 |
by GebauerJ Tue, 2022-08-16 07:44 |
|
|
RIFdocking：Unable to locate database file chemical/residue_type_sets/fa_standard/residue_types/ by sia » Tue, 2022-08-02 20:06 |
2 |
293 |
by SeongRyeong Go Mon, 2022-08-15 18:31 |
|
|
simple_cycpep_predict - Design mode - The base name "ARG" was added more than once by almeida85 » Thu, 2022-08-04 02:57 |
4 |
373 |
by almeida85 Thu, 2022-08-11 00:58 |
|
|
Urgent issue: Error with submitting a new Rosetta-Vienna RNP-ddG job by eyaaaan » Sun, 2022-08-07 22:03 |
0 |
162 |
by eyaaaan Tue, 2022-08-09 21:59 |
|
|
Nanobody design by chandana » Tue, 2022-08-09 20:36 |
0 |
174 |
by chandana Tue, 2022-08-09 20:36 |
|
|
How to choose designed antibody by Sunyp_IM » Wed, 2020-06-24 10:06 |
6 |
2,356 |
by chandana Tue, 2022-08-09 20:27 |
|
|
Unknown Element "SE" when generating NCAA params file containing selenium by liuwenxi » Thu, 2022-08-04 16:24 |
2 |
266 |
by liuwenxi Fri, 2022-08-05 09:50 |
|
|
Include MHC alpha helices in loop modelling protocol for pMHC complex by Roberto » Thu, 2022-08-04 07:22 |
0 |
143 |
by Roberto Thu, 2022-08-04 07:22 |
|
|
pMHC modelling by Roberto » Thu, 2022-08-04 07:11 |
0 |
158 |
by Roberto Thu, 2022-08-04 07:11 |
|
|
CS-Rosetta cofactor by martongadanecz » Wed, 2022-08-03 01:05 |
0 |
152 |
by martongadanecz Wed, 2022-08-03 01:05 |
|
|
errors about RIFdocking by sia » Sun, 2022-07-24 20:45 |
6 |
537 |
by sia Tue, 2022-08-02 20:08 |
|
|
Benchmarking Rosetta DDG Methods by sareeves96 » Fri, 2022-07-29 09:55 |
0 |
168 |
by sareeves96 Fri, 2022-07-29 09:55 |
|
|
ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42 by yliang20 » Wed, 2022-06-15 22:22 |
1 |
290 |
by adriancmf25 Thu, 2022-07-28 02:09 |
|
|
Expected density by GabrielDucrocq » Thu, 2022-07-14 06:38 |
1 |
253 |
by matteoferla Wed, 2022-07-20 10:50 |
|
|
shape complementarity by holdenj » Fri, 2022-07-15 13:24 |
1 |
231 |
by rmoretti Fri, 2022-07-15 13:50 |
|
|
Error with RNA_denovo by zmfowler » Thu, 2022-07-14 05:34 |
0 |
172 |
by zmfowler Thu, 2022-07-14 05:34 |
|
|
Error with RoseTTAFold by sc19 » Thu, 2022-07-14 03:40 |
0 |
188 |
by sc19 Thu, 2022-07-14 03:40 |
|
|
Ligand Docking with ROSETTA by sc19 » Thu, 2022-07-14 01:32 |
0 |
191 |
by sc19 Thu, 2022-07-14 01:34 |
|
|
Per residue total score by johnnytam100 » Wed, 2022-07-13 21:57 |
0 |
155 |
by johnnytam100 Wed, 2022-07-13 21:57 |
|
|
SnugDock Partners parameter by tyang39 » Fri, 2022-07-08 10:02 |
1 |
210 |
by rmoretti Fri, 2022-07-08 10:27 |
|
|
Pepspec - sequence sampling by almeida85 » Thu, 2022-06-23 04:05 |
0 |
192 |
by almeida85 Thu, 2022-06-23 05:50 |
|
|
Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0. by daniloboskovic » Fri, 2019-11-08 08:24 |
1 |
1,846 |
by Payne Tue, 2022-06-21 07:25 |
|
|
Could not open file /Rosetta/rosetta_bin_linux_2020.08.61146_bundle/main/database/citations/rosetta_citations by yliang20 » Wed, 2022-06-15 11:26 |
2 |
349 |
by yliang20 Wed, 2022-06-15 13:46 |
|
|
Segmentation Fault in Rosetta CM Hybridize by yliang20 » Mon, 2022-06-06 17:25 |
2 |
373 |
by yliang20 Tue, 2022-06-07 08:36 |
|
|
Local docking- should I use KIC? by seayoung lee » Fri, 2022-05-27 02:45 |
0 |
229 |
by seayoung lee Fri, 2022-05-27 02:45 |
|
|
Params for a stapled helix peptide by e3lm » Thu, 2022-05-26 12:55 |
0 |
223 |
by e3lm Thu, 2022-05-26 12:55 |
|
|
Noncanonical amino acids by wsgosal » Tue, 2014-03-18 05:29 |
8 |
5,607 |
by e3lm Thu, 2022-05-26 12:51 |
|
|
IL-2 gets better binding with beta / gamma by tonycheng1688 » Wed, 2022-05-25 10:23 |
0 |
242 |
by tonycheng1688 Wed, 2022-05-25 10:23 |
|
|
Relax evaluates protein-DNA complexes? by pablogalazdavison » Thu, 2022-05-12 12:05 |
2 |
429 |
by pablogalazdavison Fri, 2022-05-20 12:27 |
|
|
Enzyme Design Not Editing Structure by liuwenxi » Wed, 2022-05-18 10:12 |
0 |
212 |
by liuwenxi Wed, 2022-05-18 10:12 |
|
|
minimize_ppi.mpi.linuxgccrelease doesn't use jd2? by e3lm » Tue, 2022-05-17 11:58 |
0 |
218 |
by e3lm Tue, 2022-05-17 11:58 |
|
|
Disulfidize- "Extra content at the end of the document" by ldlamini » Tue, 2022-05-17 02:37 |
1 |
284 |
by rmoretti Tue, 2022-05-17 07:29 |
|
|
Flex_ddG突变设计 by wangtao » Thu, 2022-05-05 02:46 |
0 |
278 |
by wangtao Thu, 2022-05-05 02:46 |
|
|
Dimeric interface redesign by kjs1728 » Mon, 2022-05-02 21:57 |
0 |
211 |
by kjs1728 Mon, 2022-05-02 21:57 |
|
|
Pepspec error by almeida85 » Mon, 2022-05-02 04:07 |
1 |
294 |
by almeida85 Mon, 2022-05-02 05:05 |
|
|
about “protein mimic designer” by sia » Wed, 2022-04-27 19:59 |
0 |
227 |
by sia Wed, 2022-04-27 19:59 |
|
|
How to Perform point mutations with NCAA by Subhrodeep Saha » Tue, 2021-06-22 02:05 |
2 |
841 |
by dnamkr Fri, 2022-04-22 17:00 |
|
|
Ways to improve AbRelax performance? by Corvin » Tue, 2022-04-19 06:10 |
2 |
459 |
by Corvin Thu, 2022-04-21 00:50 |
|
|
trRosetta - Nan occuring in Hbond calculation by y_atsmonraz » Mon, 2021-10-04 09:16 |
1 |
478 |
by shivarawat115 Mon, 2022-04-11 16:10 |
|
|
problem in using "zinc_site_redesign" tool by Isomerase » Mon, 2022-03-28 01:19 |
0 |
237 |
by Isomerase Mon, 2022-03-28 01:19 |
|
|
snugdock run error: Sequence for partner1 does not match first member of ensemble1 by pagumaaaaa » Fri, 2022-03-25 01:21 |
0 |
265 |
by pagumaaaaa Fri, 2022-03-25 01:21 |
|
|
How do I change the default Compiler for Rosetta？ by pagumaaaaa » Wed, 2022-03-16 00:23 |
2 |
530 |
by pagumaaaaa Thu, 2022-03-24 22:40 |
|
|
Modelling at defined pH - for pmutscan - pH:mode not working by cagfa1 » Tue, 2022-03-15 04:05 |
1 |
399 |
by Rituparna_Saman... Wed, 2022-03-23 11:21 |
|
|
RosettaDock 4.0 ambiguous ERROR by sam_dc » Fri, 2022-03-18 09:36 |
3 |
721 |
by rmoretti Tue, 2022-03-22 09:10 |
|
|
Error in a new docking by jrcf » Wed, 2017-05-17 19:26 |
2 |
3,154 |
by tingting Tue, 2022-03-15 23:55 |
|
|
simple_cycpep_predict thioether_lariat option by Ken » Mon, 2022-03-14 15:14 |
0 |
274 |
by Ken Mon, 2022-03-14 15:14 |
|
|
small ligand docking in Ubuntu 20.04, please help by guowuchen » Sun, 2022-03-06 18:12 |
2 |
604 |
by guowuchen Mon, 2022-03-07 23:34 |
|
|
Rosetta Matcher not recognizing protonation forms of CST files like CYZ, HIS_D, etc by Hirbond » Tue, 2022-03-01 13:16 |
0 |
315 |
by Hirbond Tue, 2022-03-01 13:16 |
|
|
Using GlycanDock and the Antibody Affinity Maturation protocol. by tbelec » Mon, 2022-02-28 12:37 |
0 |
362 |
by tbelec Mon, 2022-02-28 12:37 |
|
|
DockingProtocol by Soler » Fri, 2022-02-11 00:12 |
3 |
806 |
by gezmi Tue, 2022-02-15 21:47 |
|
|
RAbD with N-term，Proline-like ncaa returns segmentation fault during CCDEndsGraftMover by CordycepsLin » Sun, 2022-02-06 19:09 |
9 |
1,521 |
by CordycepsLin Wed, 2022-02-09 19:39 |
|
|
Generating the 3-mer and 9-mer fragments by Prasoon » Wed, 2022-02-09 09:04 |
0 |
421 |
by Prasoon Wed, 2022-02-09 09:04 |
|
|
FastRelaxMover parameters for antibody-antigen interaction analysis by samuel_k » Thu, 2022-01-27 01:08 |
0 |
413 |
by samuel_k Thu, 2022-01-27 01:08 |
|
|
Relax in membrane pull my protein out of the membrane by Martin Floor » Wed, 2022-01-26 07:46 |
0 |
426 |
by Martin Floor Wed, 2022-01-26 07:46 |
|
|
Can anybody suggests some flags to run Rifdock? by Hyunmi Song » Sun, 2022-01-23 16:45 |
0 |
497 |
by Hyunmi Song Sun, 2022-01-23 16:45 |
|
|
ligand dock into HEM containg pdb by syntekabio2019 » Thu, 2022-01-20 03:05 |
0 |
389 |
by syntekabio2019 Thu, 2022-01-20 03:05 |
|
|
charge grid in rosetta ligand docking using rosetta script by syntekabio2019 » Mon, 2022-01-17 23:53 |
0 |
361 |
by syntekabio2019 Mon, 2022-01-17 23:53 |
|
|
I need help with cst file the paper: De Novo Computational Design of Retro-Aldol Enzymes by Wenithor » Thu, 2022-01-06 12:20 |
0 |
364 |
by Wenithor Thu, 2022-01-06 12:20 |
|
|
Protein design: Ligand binding between two units of a homodimer by chemotaxis_123 » Sun, 2022-01-02 16:01 |
0 |
337 |
by chemotaxis_123 Sun, 2022-01-02 16:01 |
|
|
[LoopModelerMover] ERROR: Can't build a fold tree from a loop with an unspecified cut point. by dgm3 » Sun, 2021-12-26 18:32 |
1 |
507 |
by dgm3 Fri, 2021-12-31 17:42 |
|
|
ERROR: APBS failed to generate the result file. by bhavranek » Sat, 2021-12-18 11:01 |
1 |
487 |
by bhavranek Sun, 2021-12-26 21:05 |
|
|
Question about running scallo by danbo » Mon, 2021-11-29 23:25 |
8 |
1,601 |
by danbo Wed, 2021-12-22 23:51 |
|
|
getting a3m files by alonwenger » Wed, 2021-12-15 02:38 |
2 |
1,066 |
by alonwenger Sat, 2021-12-18 12:32 |
|
|
simple_cycpep_predict with N-term acetylation by Ken » Fri, 2021-12-17 09:49 |
0 |
336 |
by Ken Fri, 2021-12-17 09:49 |
|
|
Segfault error while running MR Rosetta in Phenix by memilton » Thu, 2021-12-16 09:09 |
0 |
390 |
by memilton Thu, 2021-12-16 09:09 |
|
|
Remodel's problem in treatment with non-protein residues by Corvin » Mon, 2021-12-13 09:07 |
0 |
343 |
by Corvin Mon, 2021-12-13 09:07 |
|
|
Relaxed proteins show higher clash score in molprobity results. by Wang Zhe » Fri, 2021-12-03 04:32 |
4 |
1,116 |
by smlewis Wed, 2021-12-08 13:02 |
|
|
How to apply cartesian_ddg to multi-metric enzyme? by Wang Zhe » Wed, 2021-12-08 10:07 |
0 |
331 |
by Wang Zhe Wed, 2021-12-08 10:07 |
|
|
SecundaryStructure Filter by Soler » Sun, 2021-11-21 22:20 |
0 |
385 |
by Soler Sun, 2021-11-21 22:20 |
|
|
ERROR: Unable to fill in missing atoms. by mieczyslaw » Tue, 2020-10-20 09:43 |
7 |
3,927 |
by rayyoung Thu, 2021-11-18 10:13 |
|
|
constraining different chains together in rosetta_cm by y_atsmonraz » Thu, 2021-11-18 02:59 |
0 |
401 |
by y_atsmonraz Thu, 2021-11-18 03:01 |
|
|
Problems with waters in CoupledMoves application by Corvin » Tue, 2021-11-16 07:16 |
0 |
414 |
by Corvin Tue, 2021-11-16 07:22 |
|
|
The energy terms in InterfaceAnalyzer by Sunyp_IM » Tue, 2021-11-02 18:43 |
2 |
713 |
by zivben Sat, 2021-11-13 04:49 |
|
|
C-termini remodelling of dimeric structure removes second chain by LeonhardJS » Wed, 2021-10-13 06:23 |
1 |
542 |
by LeonhardJS Fri, 2021-11-12 01:20 |
|
|
connecting rna strands together by y_atsmonraz » Tue, 2021-11-09 05:42 |
1 |
474 |
by y_atsmonraz Thu, 2021-11-11 04:51 |
|
|
building a protein-dna homology model via cm_rosetta by y_atsmonraz » Wed, 2021-10-20 23:11 |
4 |
986 |
by y_atsmonraz Tue, 2021-11-02 01:47 |
|
|
Strong bias in sampling observed in RosettaDock by chenna » Thu, 2020-08-27 22:23 |
2 |
1,156 |
by chenna Tue, 2021-10-12 20:51 |
|
|
Rosetta DARc suboptimal dockings by ddhoyo » Mon, 2021-10-11 06:18 |
0 |
336 |
by ddhoyo Mon, 2021-10-11 06:18 |
|
|
Linker Building in scFv by sam_dc » Sat, 2021-10-09 05:38 |
0 |
391 |
by sam_dc Sat, 2021-10-09 05:38 |
|
|
RoseTTaFold by ozsolomon » Thu, 2021-10-07 05:27 |
2 |
1,078 |
by ozsolomon Thu, 2021-10-07 14:25 |
|
|
Symmetry definition file versions by Jeff Qu » Tue, 2021-09-28 09:53 |
0 |
370 |
by Jeff Qu Tue, 2021-09-28 09:53 |
|
|
antibody - sequence position requested was 0 by jremmel » Mon, 2021-09-27 12:26 |
1 |
609 |
by nannemdp Mon, 2021-09-27 14:22 |
|
|
Error reading in/out glycosylated silent file - "Can't create a polymer bond after residue due to incompatible type" by amorin » Mon, 2021-09-27 12:16 |
0 |
466 |
by amorin Mon, 2021-09-27 12:16 |
|
|
Python2 script in Rosetta3.13 by ddhoyo » Wed, 2021-09-15 04:05 |
1 |
689 |
by matteoferla Wed, 2021-09-15 06:04 |
|
|
Missing atoms and cannot find atom pose when refining ligand position with EM density by BuddySphinx » Mon, 2018-12-31 16:22 |
2 |
2,601 |
by e3lm Tue, 2021-09-14 10:02 |
|
|
Rosetta Ligand Ensemble by malfonsoprieto » Wed, 2021-05-26 10:21 |
3 |
1,272 |
by vizcarra Thu, 2021-08-26 10:16 |
|
|
duplex RNA by amir_tagh » Thu, 2021-08-05 06:34 |
1 |
635 |
by everyday847 Mon, 2021-08-16 10:43 |
Log in to post new content in the forum.
