You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
| Topic / Topic starter | Replies | Views |
Last post |
|
|---|---|---|---|---|
|
Sticky:
FAQ by admin » Mon, 2010-08-30 04:18 |
0 |
7,153 |
by admin Fri, 2015-09-04 16:17 |
|
|
Translate mover chain X doesnot exist. by surya » Thu, 2020-07-09 08:36 |
4 |
23 |
by surya Thu, 2020-07-09 20:13 |
|
|
Segmentation Fault during prepacking by Sunyp_IM » Fri, 2020-06-12 11:24 |
4 |
107 |
by Sunyp_IM Thu, 2020-07-09 18:40 |
|
|
Metal Ion in symmetric design by tschiex » Wed, 2020-07-08 05:28 |
0 |
5 |
by tschiex Wed, 2020-07-08 05:28 |
|
|
PEPSPEC by Neeraj » Wed, 2018-01-03 02:24 |
1 |
493 |
by Andre Serobian Wed, 2020-07-08 04:44 |
|
|
Does antibody_numbering_converter support camelid antibody? by mxp » Tue, 2020-07-07 01:21 |
0 |
13 |
by mxp Tue, 2020-07-07 01:21 |
|
|
zero standard deviation of I_sc in protein-protein docking by rohi » Fri, 2020-07-03 22:19 |
0 |
20 |
by rohi Fri, 2020-07-03 22:20 |
|
|
OptimizeMembranePositionMover - This element is not expected by bjharris » Wed, 2020-07-01 23:21 |
2 |
47 |
by bjharris Thu, 2020-07-02 11:09 |
|
|
LoopModeler mover unable to determine cut point by gszwabowski » Mon, 2020-06-01 13:12 |
1 |
71 |
by matteoferla Thu, 2020-07-02 07:27 |
|
|
ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-07-02 07:05 |
0 |
21 |
by Alison_Yajie Thu, 2020-07-02 07:10 |
|
|
kcenters_clustering_of_fragments by bjharris » Mon, 2019-07-01 16:16 |
1 |
275 |
by bjharris Wed, 2020-07-01 23:25 |
|
|
Scoring after HBNet by HHL_SIUC » Wed, 2020-07-01 10:49 |
0 |
25 |
by HHL_SIUC Wed, 2020-07-01 10:49 |
|
|
Noncanonical amino acids by wsgosal » Tue, 2014-03-18 05:29 |
5 |
3,028 |
by Nolanm15 Tue, 2020-06-30 08:43 |
|
|
Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease by Corvin » Tue, 2020-06-30 00:36 |
0 |
34 |
by Corvin Tue, 2020-06-30 00:36 |
|
|
"core.kinematics.FoldTree" error upon running RAbD by Sunyp_IM » Fri, 2020-06-26 17:27 |
2 |
63 |
by Sunyp_IM Fri, 2020-06-26 20:57 |
|
|
How to choose designed antibody by Sunyp_IM » Wed, 2020-06-24 10:06 |
3 |
76 |
by jadolfbr Thu, 2020-06-25 07:11 |
|
|
ligand_docking ligand preparation by Alison_Yajie » Thu, 2020-05-21 10:21 |
2 |
115 |
by Alison_Yajie Wed, 2020-06-24 12:38 |
|
|
Ligand docking with constraint by Alison_Yajie » Wed, 2020-06-24 12:34 |
0 |
38 |
by Alison_Yajie Wed, 2020-06-24 12:34 |
|
|
How to create a native file for Protein-Protein docking by Kotimedidhi » Fri, 2020-06-19 08:58 |
2 |
81 |
by Kotimedidhi Mon, 2020-06-22 16:19 |
|
|
How to select docked models by Sunyp_IM » Mon, 2020-06-22 00:50 |
1 |
41 |
by ssrb Mon, 2020-06-22 13:12 |
|
|
Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex by benhardy » Mon, 2020-06-15 09:33 |
3 |
86 |
by benhardy Fri, 2020-06-19 07:55 |
|
|
Residue selector by Alison_Yajie » Wed, 2020-06-17 19:57 |
0 |
47 |
by Alison_Yajie Thu, 2020-06-18 09:47 |
|
|
Constraint generator by Alison_Yajie » Wed, 2020-06-17 20:14 |
1 |
60 |
by Alison_Yajie Wed, 2020-06-17 20:35 |
|
|
metalloprotein ab initio with glutamic acid by inorgchem » Tue, 2020-06-16 20:45 |
0 |
47 |
by inorgchem Tue, 2020-06-16 20:45 |
|
|
RosettaCM: An internal error has occurred when "Running the Hybridize mover" by haom » Mon, 2020-06-15 05:56 |
4 |
77 |
by haom Tue, 2020-06-16 05:55 |
|
|
The difference between the H1 regions of modeled camelid antibody and the crystal structure. by Sunyp_IM » Sun, 2020-06-07 02:34 |
1 |
78 |
by nannemdp Sun, 2020-06-07 08:01 |
|
|
The usage of antibody_H3.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 22:50 |
2 |
102 |
by Sunyp_IM Thu, 2020-06-04 08:20 |
|
|
"Residue 7 was disulfide bonded but had no partner" with antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-06-04 05:53 |
0 |
57 |
by Sunyp_IM Thu, 2020-06-04 05:54 |
|
|
RosettaAntibodyDesign: How can I run the protocol without allowing design? by brspurri » Tue, 2020-05-26 08:12 |
5 |
165 |
by brspurri Wed, 2020-06-03 13:20 |
|
|
Building loop extensions in a membrane protein with Remodel by benhardy » Tue, 2020-06-02 08:21 |
0 |
69 |
by benhardy Tue, 2020-06-02 08:21 |
|
|
AbinitioRelax detect_disulf_tolerance by aarono » Tue, 2020-06-02 00:13 |
0 |
102 |
by aarono Tue, 2020-06-02 00:13 |
|
|
ligand_docking_error by Alison_Yajie » Mon, 2020-04-20 12:27 |
3 |
266 |
by YuFei Sat, 2020-05-30 00:12 |
|
|
Problems with mpi version of antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 23:06 |
0 |
82 |
by Sunyp_IM Thu, 2020-05-28 23:07 |
|
|
mp_transform optimize with franklin2019 scoring by benhardy » Thu, 2020-05-28 08:35 |
0 |
104 |
by benhardy Thu, 2020-05-28 08:45 |
|
|
What is a rational minimal value for the "-nstruct" option by Sunyp_IM » Fri, 2020-05-22 01:28 |
3 |
151 |
by nannemdp Sun, 2020-05-24 14:46 |
|
|
cartesian_ddg crashes when the mutfile contains multiple mutations to non-canonical residues by ValentinaSora » Sun, 2020-05-24 12:32 |
0 |
73 |
by ValentinaSora Sun, 2020-05-24 12:32 |
|
|
relax and movemap by Alison_Yajie » Wed, 2020-05-20 21:27 |
3 |
130 |
by smlewis Thu, 2020-05-21 21:05 |
|
|
Changing rosetta scoring to favour less hydrophobic areas by daniloboskovic » Thu, 2020-05-21 03:03 |
1 |
89 |
by vmulligan Thu, 2020-05-21 18:33 |
|
|
ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-05-21 09:42 |
0 |
55 |
by Alison_Yajie Thu, 2020-05-21 09:42 |
|
|
Modelling temperature dependent RNA structures by tuleshwori » Tue, 2020-05-19 01:16 |
2 |
99 |
by tuleshwori Thu, 2020-05-21 02:08 |
|
|
Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1 by cm21 » Wed, 2020-05-20 08:55 |
2 |
104 |
by cm21 Wed, 2020-05-20 11:22 |
|
|
Rna Denovo by helderveras » Wed, 2020-05-06 08:40 |
5 |
203 |
by everyday847 Wed, 2020-05-20 08:52 |
|
|
Side-chain grafting at the fixed protein and position by Kazu » Wed, 2020-05-20 08:49 |
0 |
63 |
by Kazu Wed, 2020-05-20 08:49 |
|
|
Transmembrane helix fold-and-dock? by sarah_b » Tue, 2020-05-12 02:09 |
3 |
159 |
by jkleman Tue, 2020-05-19 15:02 |
|
|
protein relax by Alison_Yajie » Tue, 2020-05-19 08:29 |
0 |
65 |
by Alison_Yajie Tue, 2020-05-19 08:29 |
|
|
RosettaAntibodyDesign] How can I use run_relax and run_snugdock as part of my command and workflow? by brspurri » Thu, 2020-05-14 11:15 |
2 |
112 |
by brspurri Thu, 2020-05-14 12:24 |
|
|
Multistate design issues with -run:msd_job_dist option and MSDMover by elaine.thai » Wed, 2020-05-13 18:07 |
0 |
89 |
by elaine.thai Wed, 2020-05-13 18:07 |
|
|
Flex_ddG crashes when attempting to move 2 chains (e.g. chains_to_move = A,C) by jcampecino » Wed, 2020-05-13 12:22 |
0 |
74 |
by jcampecino Wed, 2020-05-13 12:22 |
|
|
How to run partial_thread in RosettaCM when residure are more than 9999? by lanselibai » Mon, 2020-05-11 22:43 |
2 |
161 |
by lanselibai Tue, 2020-05-12 20:25 |
|
|
How to concatenate the 3-mer and 9-mer files for RosettaCM? by lanselibai » Fri, 2020-05-08 05:38 |
5 |
220 |
by danpf Tue, 2020-05-12 10:58 |
|
|
Template/Input length mismatch error during RosettaCM by marinok » Mon, 2020-05-04 13:12 |
4 |
157 |
by marinok Mon, 2020-05-11 12:48 |
|
|
General question regarding ligand-docking by Alison_Yajie » Thu, 2020-05-07 09:48 |
0 |
87 |
by Alison_Yajie Thu, 2020-05-07 09:48 |
|
|
Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans? by ccottrell » Tue, 2020-05-05 20:30 |
5 |
187 |
by jadolfbr Wed, 2020-05-06 11:37 |
|
|
Ligand docking at specific orientation by ShiranBZ » Mon, 2020-04-13 20:46 |
1 |
121 |
by matteoferla Mon, 2020-05-04 02:02 |
|
|
can remodel add loops in one chain in multichain PDB structure? by ksteczk » Fri, 2020-05-01 06:26 |
1 |
84 |
by matteoferla Mon, 2020-05-04 01:43 |
|
|
BUG REPORT: Remodel Resfile ERROR: LEU was added more than once? by daniloboskovic » Wed, 2020-04-29 01:17 |
2 |
134 |
by daniloboskovic Wed, 2020-04-29 05:51 |
|
|
Using opt-nov15 scaling factor for cartesian_ddg protocol run with REF2015 & best way to calculate ddg from more iterations by free_radical » Mon, 2020-04-27 00:25 |
0 |
125 |
by free_radical Mon, 2020-04-27 21:53 |
|
|
RosettaDesign error with Option file open failed by xingqing326 » Sun, 2020-04-19 01:56 |
4 |
204 |
by xingqing326 Tue, 2020-04-21 19:11 |
|
|
DNA-protein docking by ksteczk » Sat, 2020-04-11 11:23 |
0 |
132 |
by ksteczk Sat, 2020-04-11 11:23 |
|
|
Use membrane or non-membrane weights in RosettaCM for a hexon in virus capsid? by lanselibai » Sat, 2020-04-11 02:10 |
0 |
129 |
by lanselibai Sat, 2020-04-11 02:10 |
|
|
Rosetta remodel - including an RNA ligand by daniloboskovic » Fri, 2020-04-10 04:24 |
0 |
122 |
by daniloboskovic Fri, 2020-04-10 04:24 |
|
|
Error with the mpi version of simple_cycpep_predict by Florent Langenfeld » Wed, 2020-02-05 05:16 |
5 |
411 |
by vmulligan Fri, 2020-04-10 02:54 |
|
|
What means "[ ERROR ] TIME_STAMP: AbrelaxMover: finished ...NO_BATCH S_0001." by Corvin » Thu, 2020-04-02 00:16 |
0 |
123 |
by Corvin Thu, 2020-04-02 00:16 |
|
|
Docking of multichain oligomers by sdh_h » Wed, 2020-03-25 12:43 |
0 |
154 |
by sdh_h Wed, 2020-03-25 12:43 |
|
|
Any progress on getting intermediate structures during a design? by broomsday » Mon, 2020-03-16 06:46 |
2 |
191 |
by vmulligan Tue, 2020-03-17 11:35 |
|
|
application for affinity optimization by wentlewi » Fri, 2020-03-13 03:24 |
0 |
167 |
by wentlewi Fri, 2020-03-13 03:24 |
|
|
Is native.pdb necess for fragment_picker？ by ylwang » Thu, 2020-03-12 00:57 |
2 |
221 |
by ylwang Thu, 2020-03-12 20:42 |
|
|
"sparks failed" error when running "make_fragments.pl"? by Danielsebas » Tue, 2019-09-03 03:43 |
6 |
731 |
by Jacob_Verburgt Tue, 2020-03-10 14:39 |
|
|
score is 0 in the output? - RosettaScripts by chrisHKL » Thu, 2020-03-05 09:33 |
0 |
126 |
by chrisHKL Thu, 2020-03-05 12:58 |
|
|
Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring by brspurri » Wed, 2017-03-29 13:19 |
4 |
1,765 |
by Morrian_Lynn Thu, 2020-03-05 10:07 |
|
|
RosettaScript Segmentation Fault (crash log attached) by chrisHKL » Thu, 2020-03-05 07:21 |
2 |
178 |
by chrisHKL Thu, 2020-03-05 09:11 |
|
|
std::bad_alloc error after changing .xml script? by chrisHKL » Wed, 2020-03-04 11:44 |
10 |
492 |
by jadolfbr Thu, 2020-03-05 07:02 |
|
|
nstruct vs. trials? by chrisHKL » Mon, 2020-03-02 13:22 |
2 |
222 |
by chrisHKL Wed, 2020-03-04 10:49 |
|
|
Comparative Modeling Templates for Protein with Multiple Domains by Morrian_Lynn » Wed, 2020-03-04 10:42 |
0 |
143 |
by Morrian_Lynn Wed, 2020-03-04 10:42 |
|
|
Ddg filter threshold value? by chrisHKL » Fri, 2020-02-28 15:01 |
1 |
161 |
by rmoretti Wed, 2020-03-04 09:56 |
|
|
Imitating induced fit protocol in SymDock2 without any symmetry constraints by chenna » Fri, 2020-02-14 01:35 |
2 |
234 |
by chenna Wed, 2020-03-04 03:24 |
|
|
Filter for fixed-bb design using RosettaScript? by chrisHKL » Fri, 2020-02-28 19:47 |
4 |
243 |
by vmulligan Mon, 2020-03-02 13:40 |
|
|
antibody_numbering_converter cannot recognize the IMGT scheme by cryosky » Sat, 2020-02-29 23:12 |
4 |
288 |
by jadolfbr Sun, 2020-03-01 14:54 |
|
|
What is interface_cutoff_distance? And why did my residues outside this value get designed? by chrisHKL » Fri, 2020-02-28 14:52 |
0 |
114 |
by chrisHKL Fri, 2020-02-28 14:52 |
|
|
remodel ERROR: unrecognized mm_atom_type_name RGU by daniloboskovic » Sat, 2020-02-22 11:55 |
1 |
186 |
by daniloboskovic Tue, 2020-02-25 08:28 |
|
|
Rosetta scripts crash in CM workflow by jlburkhead » Tue, 2019-12-03 22:55 |
1 |
290 |
by danpf Fri, 2020-02-21 18:37 |
|
|
Options "-out:prefix" didn't work by maruhuang » Tue, 2019-09-10 05:42 |
4 |
432 |
by danpf Fri, 2020-02-21 18:32 |
|
|
Protein-Protein Docking or Comparative Modeling by Morrian_Lynn » Wed, 2020-01-29 19:01 |
1 |
216 |
by danpf Fri, 2020-02-21 18:23 |
|
|
How can I model ligands in comparative modeling by Morrian_Lynn » Thu, 2020-02-20 09:57 |
1 |
186 |
by danpf Fri, 2020-02-21 17:05 |
|
|
Docking to TM protein plus lipid bilayer by renedominik » Tue, 2019-03-12 06:58 |
3 |
739 |
by renedominik Tue, 2020-02-18 01:36 |
|
|
get an increased energy after energy minimization when using different score functions for repacking and energy minimization by xinmiaohe » Fri, 2020-02-07 11:59 |
1 |
168 |
by xinmiaohe Fri, 2020-02-07 13:52 |
|
|
error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease by xinmiaohe » Thu, 2020-01-30 22:09 |
1 |
244 |
by xinmiaohe Fri, 2020-01-31 08:23 |
|
|
Error during single state design by sujigeorge1979 » Sat, 2020-01-18 00:37 |
5 |
455 |
by rmoretti Thu, 2020-01-30 15:42 |
|
|
fixing sequence during grafting in antibody_designer by COM » Fri, 2020-01-24 11:38 |
1 |
214 |
by jadolfbr Tue, 2020-01-28 09:13 |
|
|
appropriate sampling for protein docking to a multi chain assembly by SWM » Fri, 2020-01-24 11:22 |
0 |
142 |
by SWM Fri, 2020-01-24 11:22 |
|
|
Limit on backbone movement in relax? by SWM » Fri, 2020-01-24 07:35 |
0 |
170 |
by SWM Fri, 2020-01-24 07:35 |
|
|
docking with capping groups by xavierfradera » Sun, 2018-11-04 16:17 |
1 |
427 |
by maral.adeli-kou... Wed, 2020-01-22 12:41 |
|
|
Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
2 |
237 |
by Martin Floor Tue, 2020-01-21 11:15 |
|
|
How to freeze ligand during FastRelax? by dnamkr » Thu, 2020-01-02 14:53 |
1 |
248 |
by aloshbau Fri, 2020-01-10 16:48 |
|
|
cartfrag_overlap error while running hybridize protocol by sn » Thu, 2017-12-21 10:24 |
2 |
772 |
by dnamkr Mon, 2019-12-30 11:43 |
|
|
Can remodel really handle multiple insertions in one simulation? by lanselibai » Sat, 2019-12-28 12:51 |
0 |
182 |
by lanselibai Sat, 2019-12-28 12:51 |
|
|
Remodel: the pose does not have residue with chain=H, PDBnum=114 by lanselibai » Wed, 2019-12-25 13:35 |
1 |
274 |
by lanselibai Fri, 2019-12-27 09:38 |
|
|
RosettaCM hybridize mover error after fragment picking by amorin » Thu, 2018-09-06 11:03 |
2 |
770 |
by dnamkr Thu, 2019-12-26 10:22 |
|
|
Error Implementing Match Style Constraints by pwging13 » Thu, 2019-12-19 09:53 |
0 |
203 |
by pwging13 Thu, 2019-12-19 09:53 |
|
|
using DARC in rosetta by syntekabio2019 » Thu, 2019-12-12 01:27 |
0 |
252 |
by syntekabio2019 Thu, 2019-12-12 01:27 |
Log in to post new content in the forum.
