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Rosetta 3 - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
0
6,624 by admin
Fri, 2015-09-04 16:17
Normal topic Segmentation Fault in Fragment picking
by ashu4487 » Fri, 2018-07-06 20:47
2
55 by ashu4487
Mon, 2018-07-16 19:24
Normal topic Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2
by AJVincelli » Sat, 2018-07-14 13:14
0
77 by AJVincelli
Sat, 2018-07-14 13:24
Normal topic SEWING and motif file generation
by rbjacob » Thu, 2018-07-12 07:28
1
36 by smlewis
Thu, 2018-07-12 10:57
Normal topic KofNConstraint used only in the final pose scoring
by allan.ferrari » Sun, 2018-07-08 18:18
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36 by allan.ferrari
Sun, 2018-07-08 18:28
Normal topic Question on restraining receptor symmetry when docking ligand
by subha » Fri, 2018-07-06 21:59
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39 by subha
Fri, 2018-07-06 21:59
Normal topic Calbur vs Energy Based Clustering
by Swillard » Sun, 2018-07-01 13:24
0
40 by Swillard
Sun, 2018-07-01 13:24
Normal topic The question of ligand docking with constraints
by asbelx » Mon, 2018-06-11 09:39
3
96 by rmoretti
Thu, 2018-06-28 12:58
Normal topic How to preserve ACE/NME termini?
by nitroamos » Tue, 2018-05-22 13:07
3
136 by rmoretti
Thu, 2018-06-28 12:44
Normal topic Multistate design output
by tong » Wed, 2018-06-20 00:21
6
112 by tong
Sun, 2018-06-24 23:30
Normal topic The question about ligand score function
by asbelx » Sun, 2018-06-17 02:07
2
92 by asbelx
Mon, 2018-06-18 22:34
Normal topic Multistate design on Rosetta - no generations produced
by tong » Wed, 2018-06-13 00:36
8
165 by smlewis
Thu, 2018-06-14 10:26
Normal topic ab initio
by malkeet.singh » Thu, 2018-05-10 05:34
3
166 by malkeet.singh
Mon, 2018-05-21 04:26
Hot topic multiple template homolgy modelling (Page: 1, 2)
by pdbb » Tue, 2012-10-30 08:12
51
25,508 by rmoretti
Fri, 2018-05-18 12:40
Normal topic Fastsaxs
by Pernille » Mon, 2013-07-22 07:29
9
9,073 by rmoretti
Fri, 2018-05-18 12:35
Normal topic broker domain insertion
by dhirajks » Sun, 2018-05-06 12:55
1
67 by rmoretti
Fri, 2018-05-18 12:28
Normal topic cartesian_ddg error: "Assertion `files.size() == 1` failed."
by cossio » Fri, 2018-05-11 09:59
2
126 by cossio
Fri, 2018-05-18 09:51
Normal topic radius of gyration as constrain
by dhirajks » Sat, 2018-05-05 23:00
1
88 by smlewis
Mon, 2018-05-07 11:42
Normal topic select_best_unique_ligand_poses - Ligand docking
by subha » Thu, 2018-04-19 10:36
4
184 by subha
Fri, 2018-04-20 12:49
Normal topic DDG_monomer ΔΔG question
by asbelx » Fri, 2018-04-20 03:31
0
135 by asbelx
Fri, 2018-04-20 03:33
Normal topic Clustering issue
by Loki01 » Thu, 2018-03-29 10:16
4
219 by Loki01
Thu, 2018-04-12 08:28
Normal topic splitfile.py
by saladi » Fri, 2018-03-30 10:31
1
116 by rmoretti
Tue, 2018-04-10 15:34
Normal topic Coding denovo prediction from density maps in PyRosetta
by ahmadkhalifa » Tue, 2018-04-10 11:43
1
84 by rmoretti
Tue, 2018-04-10 15:29
Normal topic DDG and interaction score problem
by a-eatemadi@razi... » Mon, 2018-04-09 22:54
0
85 by a-eatemadi@razi...
Mon, 2018-04-09 22:54
Normal topic Problem with Scoring function and PlaceStub mover
by a-eatemadi@razi... » Sat, 2018-04-07 09:22
0
79 by a-eatemadi@razi...
Sat, 2018-04-07 09:24
Normal topic FlexPepDock Multi chain receptor
by evo_umich » Mon, 2018-04-02 12:13
0
88 by evo_umich
Mon, 2018-04-02 12:13
Normal topic Secondary Matching build_sets Error
by enmirts » Wed, 2018-03-28 10:33
0
89 by enmirts
Wed, 2018-03-28 10:34
Normal topic cyclization_type flag in simple_cycpep_predict
by Florent Langenfeld » Thu, 2018-01-04 09:22
5
364 by Florent Langenfeld
Tue, 2018-03-27 11:44
Normal topic ddg_monomer consumes massive RAM
by cossio » Fri, 2018-03-09 17:02
7
432 by rmoretti
Mon, 2018-03-19 12:12
Normal topic DDG_monomer application
by shadrinams » Mon, 2018-02-12 12:14
2
277 by shadrinams
Wed, 2018-03-14 07:46
Normal topic Rosetta Script for ddg_monomer protocol 16
by cossio » Thu, 2018-01-25 08:23
2
263 by cossio
Sun, 2018-03-11 09:12
Normal topic remodel gives no output
by coomteng@gmail.com » Tue, 2018-03-06 07:40
3
234 by rmoretti
Wed, 2018-03-07 08:44
Normal topic cm_scripts
by sn » Wed, 2018-02-14 11:00
1
189 by rmoretti
Wed, 2018-02-21 15:21
Normal topic Line search failed even after resetting Hessian
by Loki01 » Wed, 2017-12-13 16:52
6
578 by Loki01
Thu, 2018-02-15 13:54
Normal topic relax a protein with phosphorylated serine residue
by zruan » Thu, 2018-02-01 09:18
3
387 by rmoretti
Tue, 2018-02-06 09:47
Normal topic running structure prediction with robetta server like automation
by dhirajks » Mon, 2018-01-29 21:32
1
227 by rmoretti
Tue, 2018-01-30 07:51
Normal topic Extract PDB structures from database
by cossio » Mon, 2018-01-29 09:30
1
232 by rmoretti
Tue, 2018-01-30 07:35
Normal topic Modeling more than one protein loop at the same time
by hzhekova » Mon, 2018-01-15 14:03
2
337 by hzhekova
Tue, 2018-01-16 10:31
Normal topic RosettaLigand Docking
by Dinesh Kumar » Mon, 2018-01-15 20:54
1
197 by rmoretti
Tue, 2018-01-16 07:24
Normal topic Comparative modeling using a two chained template for a one chain structure
by ahmadkhalifa » Mon, 2017-12-18 11:00
1
171 by rmoretti
Mon, 2018-01-15 16:14
Normal topic cartfrag_overlap error while running hybridize protocol
by sn » Thu, 2017-12-21 10:24
1
182 by rmoretti
Mon, 2018-01-15 16:07
Normal topic Modeling the structure of camel single domain antibody
by Sunyp_IM » Mon, 2018-01-08 00:34
1
193 by Sunyp_IM
Mon, 2018-01-08 00:55
Normal topic PEPSPEC
by Neeraj » Wed, 2018-01-03 02:24
0
154 by Neeraj
Wed, 2018-01-03 02:24
Normal topic  The error of InterfaceAnalyzer
by asbelx » Thu, 2017-12-21 19:04
3
432 by smlewis
Sat, 2017-12-23 15:56
Normal topic fixbb and ncaa's
by jarek » Thu, 2012-11-08 04:55
4
1,668 by jcminerlanl
Thu, 2017-12-21 10:13
Normal topic comparative modelling of a complex
by sdh_h » Sun, 2017-12-17 06:07
0
154 by sdh_h
Sun, 2017-12-17 06:07
Normal topic RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist.
by kamau » Fri, 2017-12-01 08:42
1
217 by kamau
Wed, 2017-12-13 14:31
Normal topic side chain repacking error
by malkeet.singh » Thu, 2017-12-07 04:49
4
394 by smlewis
Wed, 2017-12-13 09:54
Normal topic How to design the anitgen-antibody interface
by Sunyp_IM » Tue, 2017-12-12 18:44
0
169 by Sunyp_IM
Tue, 2017-12-12 18:44
Normal topic how to generate the whole molecule that contains all the symmetric chains
by Sunyp_IM » Sun, 2017-12-10 19:43
0
169 by Sunyp_IM
Sun, 2017-12-10 19:43
Normal topic Interesting scoring performance in flexpepdock against random peptides
by ziqi1234 » Fri, 2017-12-08 07:52
0
179 by ziqi1234
Fri, 2017-12-08 07:52
Normal topic output file in ddg calcualtion
by malkeet.singh » Sun, 2017-12-03 07:59
1
201 by malkeet.singh
Wed, 2017-12-06 02:02
Normal topic jd2 quits before reaching -nstruct # in roseta_scripts.mpi.linuxgccrelease
by fradom » Mon, 2017-11-27 02:55
6
593 by fradom
Tue, 2017-12-05 01:52
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
0
213 by a-eatemadi@razi...
Mon, 2017-12-04 23:52
Normal topic blast database error
by jessye » Sun, 2017-12-03 23:59
1
198 by smlewis
Mon, 2017-12-04 12:18
Normal topic terminal amino acids of gap has incomplete valency
by malkeet.singh » Wed, 2017-11-29 05:20
6
478 by rmoretti
Fri, 2017-12-01 12:05
Normal topic how to fix the ATP HETATM by using movemap or constraint file?
by ziqi1234 » Mon, 2017-11-20 06:43
9
831 by ziqi1234
Wed, 2017-11-22 06:21
Normal topic The Usage of motifgraft
by Sunyp_IM » Sun, 2017-11-19 20:22
2
369 by Sunyp_IM
Mon, 2017-11-20 19:20
Hot topic ddG calculation
by malkeet.singh » Sun, 2017-06-25 07:53
32
4,101 by malkeet.singh
Tue, 2017-11-14 04:33
Normal topic UnfoldedStateEnergyCalculator MPI Error
by colin.walsh.brown » Mon, 2017-11-13 09:43
1
208 by smlewis
Mon, 2017-11-13 10:43
Normal topic H3 modeling takes 10 days more?
by jessye » Fri, 2017-10-27 03:11
7
670 by jessye
Fri, 2017-11-03 20:15
Normal topic Rosetta RNA denovo huge memory usage (probable memory leak)
by cdegut » Mon, 2017-10-30 16:41
5
457 by cdegut
Fri, 2017-11-03 05:50
Normal topic Abinitio error: std::out_of_range: basic_string
by Harley Worthy » Tue, 2017-10-31 15:20
1
314 by Harley Worthy
Thu, 2017-11-02 08:53
Normal topic Error when running Remodel with EnzDes constraint file to extend c-terminal
by Jeffrey_Chen » Thu, 2017-01-19 06:20
4
1,127 by dfcoelho
Tue, 2017-10-17 11:52
Normal topic Ligand docking cannot open the protein file
by swarekwood » Tue, 2017-10-17 08:17
1
205 by rmoretti
Tue, 2017-10-17 09:03
Normal topic Surface Docking Crash (continued)
by dkozuch » Tue, 2017-09-12 06:18
1
243 by rmoretti
Tue, 2017-10-10 10:08
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
429 by rmoretti
Tue, 2017-10-10 10:05
Normal topic How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI
by kingljy » Sun, 2017-09-24 18:37
3
544 by rmoretti
Tue, 2017-10-10 09:58
Normal topic dssp
by MA » Thu, 2017-10-05 09:34
1
253 by rmoretti
Tue, 2017-10-10 09:54
Normal topic Dock two domains using topology broker
by sn » Thu, 2017-10-05 17:07
0
194 by sn
Thu, 2017-10-05 17:07
Normal topic problems with generating the params file
by dyu » Thu, 2017-09-28 13:34
2
321 by dyu
Thu, 2017-09-28 18:54
Normal topic Place ligand in a pocket
by sn » Fri, 2017-09-15 12:53
1
266 by rmoretti
Fri, 2017-09-15 13:11
Normal topic Surface Docking Application Crash
by dkozuch » Sat, 2017-09-02 18:32
11
1,184 by dkozuch
Sat, 2017-09-09 08:51
Hot topic Folppy Tail and Constraints
by sfulad2 » Fri, 2017-05-12 12:23
15
1,639 by smlewis
Fri, 2017-09-08 09:16
Normal topic Using different number of 9-mers (UPDATED)
by JadAbbass » Mon, 2017-08-28 07:20
1
340 by rmoretti
Mon, 2017-09-04 10:33
Normal topic Ligand Docking with Rosetta Scripts memory problem
by Swillard » Thu, 2017-08-17 14:59
5
702 by rmoretti
Mon, 2017-09-04 10:10
Normal topic Relax is resulting in a Segmentation Fault
by brspurri » Thu, 2017-08-24 18:46
3
583 by brspurri
Sat, 2017-08-26 07:08
Normal topic -loops:fa_input not found in command line top-level context
by swarekwood » Thu, 2017-08-24 03:15
2
395 by swarekwood
Fri, 2017-08-25 05:08
Normal topic Allow region of protein to move in a certain direction
by sn » Wed, 2017-08-23 17:07
3
637 by rmoretti
Thu, 2017-08-24 11:00
Normal topic extract_pdb application parse error with silent file
by staciekim » Tue, 2017-08-22 12:39
5
834 by rmoretti
Thu, 2017-08-24 08:19
Normal topic Running snugdock was crashed by "segmentation fault"
by Sunyp_IM » Mon, 2017-08-21 05:03
3
497 by rmoretti
Tue, 2017-08-22 09:03
Normal topic The problems on pdb renumbering
by Sunyp_IM » Sun, 2017-08-20 06:39
0
385 by Sunyp_IM
Sun, 2017-08-20 06:39
Normal topic Ligand params file proton_chi parameters
by staciekim » Thu, 2017-08-17 14:50
2
459 by staciekim
Thu, 2017-08-17 17:06
Normal topic Getting error with Rosetta "antibody.linuxgccrelease" command
by Sunyp_IM » Mon, 2017-08-07 19:40
1
416 by smlewis
Tue, 2017-08-15 23:19
Normal topic Parse error while reading in XML file in ROSETTA Scripts
by rweisse » Fri, 2014-08-29 03:24
5
3,976 by a-eatemadi@razi...
Sun, 2017-08-06 03:49
Normal topic MPdocking I_sc
by jrcf » Mon, 2017-07-31 16:10
1
315 by rmoretti
Thu, 2017-08-03 09:29
Normal topic Error src/core/scoring/MembraneTopology.cc line: 139
by Daniel Hall » Thu, 2017-07-13 04:58
6
1,003 by rmoretti
Tue, 2017-07-18 09:00
Normal topic rosetta app
by MA » Wed, 2017-07-05 06:52
5
765 by smlewis
Tue, 2017-07-11 07:53
Normal topic SnugDocking a VHH:antigen complex possible?
by David Weis » Thu, 2017-02-16 05:57
7
1,428 by rmoretti
Thu, 2017-07-06 13:00
Normal topic conformational sampling of multi domain protein
by dhirajks » Tue, 2017-07-04 11:20
4
648 by jrporter
Wed, 2017-07-05 06:30
Normal topic Converting -patch replonly residues to original sequence
by subha » Mon, 2017-06-26 13:39
8
1,058 by smlewis
Tue, 2017-07-04 15:42
Normal topic Packstat application output
by Vedasheersh » Mon, 2017-07-03 02:45
1
356 by rmoretti
Mon, 2017-07-03 09:17
Normal topic How to minimize the decoys obtained from backrub?
by Vedasheersh » Wed, 2017-06-14 10:26
5
767 by SenyorDrew
Fri, 2017-06-30 09:47
Hot topic Errors in Getting Erraser to run
by belousoff » Thu, 2017-06-01 16:13
15
1,934 by belousoff
Mon, 2017-06-26 16:46
Normal topic Error Interface analyser
by jrcf » Thu, 2017-06-22 12:55
1
402 by smlewis
Thu, 2017-06-22 13:31
Normal topic Up to date Vall database
by JadAbbass » Sat, 2013-06-29 10:35
3
2,477 by rmoretti
Tue, 2017-06-20 09:02
Normal topic domain:domain fusion
by felipet » Thu, 2017-06-15 13:13
5
874 by felipet
Fri, 2017-06-16 11:42
Normal topic error extracting PDB from silent from AbinitioRelax with constraints
by attesor » Wed, 2017-06-14 04:15
2
444 by smlewis
Fri, 2017-06-16 07:35
Normal topic How to run simulations with non-canonical amino acids?
by Denise » Thu, 2017-06-08 07:50
4
698 by Denise
Thu, 2017-06-15 04:26
Normal topic How to find cluster core structure?
by assignfit » Thu, 2012-03-29 20:35
7
2,595 by attesor
Wed, 2017-06-14 07:32

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