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Rosetta 3 - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
0
6,488 by admin
Fri, 2015-09-04 16:17
Normal topic Modeling more than one protein loop at the same time
by hzhekova » Mon, 2018-01-15 14:03
2
28 by hzhekova
Tue, 2018-01-16 10:31
Normal topic RosettaLigand Docking
by Dinesh Kumar » Mon, 2018-01-15 20:54
1
15 by rmoretti
Tue, 2018-01-16 07:24
Normal topic Line search failed even after resetting Hessian
by Loki01 » Wed, 2017-12-13 16:52
4
78 by Loki01
Tue, 2018-01-16 06:48
Normal topic Comparative modeling using a two chained template for a one chain structure
by ahmadkhalifa » Mon, 2017-12-18 11:00
1
36 by rmoretti
Mon, 2018-01-15 16:14
Normal topic cartfrag_overlap error while running hybridize protocol
by sn » Thu, 2017-12-21 10:24
1
44 by rmoretti
Mon, 2018-01-15 16:07
Hot topic multiple template homolgy modelling
by pdbb » Tue, 2012-10-30 08:12
49
22,182 by rmoretti
Mon, 2018-01-15 15:53
Normal topic Modeling the structure of camel single domain antibody
by Sunyp_IM » Mon, 2018-01-08 00:34
1
29 by Sunyp_IM
Mon, 2018-01-08 00:55
Normal topic cyclization_type flag in simple_cycpep_predict
by Florent Langenfeld » Thu, 2018-01-04 09:22
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27 by Florent Langenfeld
Thu, 2018-01-04 09:22
Normal topic PEPSPEC
by Neeraj » Wed, 2018-01-03 02:24
0
24 by Neeraj
Wed, 2018-01-03 02:24
Normal topic  The error of InterfaceAnalyzer
by asbelx » Thu, 2017-12-21 19:04
3
97 by smlewis
Sat, 2017-12-23 15:56
Normal topic fixbb and ncaa's
by jarek » Thu, 2012-11-08 04:55
4
1,354 by jcminerlanl
Thu, 2017-12-21 10:13
Normal topic comparative modelling of a complex
by sdh_h » Sun, 2017-12-17 06:07
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36 by sdh_h
Sun, 2017-12-17 06:07
Normal topic RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist.
by kamau » Fri, 2017-12-01 08:42
1
66 by kamau
Wed, 2017-12-13 14:31
Normal topic side chain repacking error
by malkeet.singh » Thu, 2017-12-07 04:49
4
95 by smlewis
Wed, 2017-12-13 09:54
Normal topic How to design the anitgen-antibody interface
by Sunyp_IM » Tue, 2017-12-12 18:44
0
44 by Sunyp_IM
Tue, 2017-12-12 18:44
Normal topic how to generate the whole molecule that contains all the symmetric chains
by Sunyp_IM » Sun, 2017-12-10 19:43
0
34 by Sunyp_IM
Sun, 2017-12-10 19:43
Normal topic Interesting scoring performance in flexpepdock against random peptides
by ziqi1234 » Fri, 2017-12-08 07:52
0
54 by ziqi1234
Fri, 2017-12-08 07:52
Normal topic output file in ddg calcualtion
by malkeet.singh » Sun, 2017-12-03 07:59
1
53 by malkeet.singh
Wed, 2017-12-06 02:02
Normal topic jd2 quits before reaching -nstruct # in roseta_scripts.mpi.linuxgccrelease
by fradom » Mon, 2017-11-27 02:55
6
153 by fradom
Tue, 2017-12-05 01:52
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
0
79 by a-eatemadi@razi...
Mon, 2017-12-04 23:52
Normal topic blast database error
by jessye » Sun, 2017-12-03 23:59
1
51 by smlewis
Mon, 2017-12-04 12:18
Normal topic terminal amino acids of gap has incomplete valency
by malkeet.singh » Wed, 2017-11-29 05:20
6
119 by rmoretti
Fri, 2017-12-01 12:05
Normal topic how to fix the ATP HETATM by using movemap or constraint file?
by ziqi1234 » Mon, 2017-11-20 06:43
9
250 by ziqi1234
Wed, 2017-11-22 06:21
Normal topic The Usage of motifgraft
by Sunyp_IM » Sun, 2017-11-19 20:22
2
88 by Sunyp_IM
Mon, 2017-11-20 19:20
Hot topic ddG calculation
by malkeet.singh » Sun, 2017-06-25 07:53
32
2,236 by malkeet.singh
Tue, 2017-11-14 04:33
Normal topic UnfoldedStateEnergyCalculator MPI Error
by colin.walsh.brown » Mon, 2017-11-13 09:43
1
62 by smlewis
Mon, 2017-11-13 10:43
Normal topic H3 modeling takes 10 days more?
by jessye » Fri, 2017-10-27 03:11
7
248 by jessye
Fri, 2017-11-03 20:15
Normal topic Rosetta RNA denovo huge memory usage (probable memory leak)
by cdegut » Mon, 2017-10-30 16:41
5
155 by cdegut
Fri, 2017-11-03 05:50
Normal topic Abinitio error: std::out_of_range: basic_string
by Harley Worthy » Tue, 2017-10-31 15:20
1
88 by Harley Worthy
Thu, 2017-11-02 08:53
Normal topic Error when running Remodel with EnzDes constraint file to extend c-terminal
by Jeffrey_Chen » Thu, 2017-01-19 06:20
4
744 by dfcoelho
Tue, 2017-10-17 11:52
Normal topic Ligand docking cannot open the protein file
by swarekwood » Tue, 2017-10-17 08:17
1
71 by rmoretti
Tue, 2017-10-17 09:03
Normal topic Surface Docking Crash (continued)
by dkozuch » Tue, 2017-09-12 06:18
1
107 by rmoretti
Tue, 2017-10-10 10:08
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
194 by rmoretti
Tue, 2017-10-10 10:05
Normal topic How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI
by kingljy » Sun, 2017-09-24 18:37
3
222 by rmoretti
Tue, 2017-10-10 09:58
Normal topic dssp
by MA » Thu, 2017-10-05 09:34
1
91 by rmoretti
Tue, 2017-10-10 09:54
Normal topic Dock two domains using topology broker
by sn » Thu, 2017-10-05 17:07
0
97 by sn
Thu, 2017-10-05 17:07
Normal topic problems with generating the params file
by dyu » Thu, 2017-09-28 13:34
2
135 by dyu
Thu, 2017-09-28 18:54
Normal topic Place ligand in a pocket
by sn » Fri, 2017-09-15 12:53
1
97 by rmoretti
Fri, 2017-09-15 13:11
Normal topic Surface Docking Application Crash
by dkozuch » Sat, 2017-09-02 18:32
11
539 by dkozuch
Sat, 2017-09-09 08:51
Hot topic Folppy Tail and Constraints
by sfulad2 » Fri, 2017-05-12 12:23
15
894 by smlewis
Fri, 2017-09-08 09:16
Normal topic Using different number of 9-mers (UPDATED)
by JadAbbass » Mon, 2017-08-28 07:20
1
164 by rmoretti
Mon, 2017-09-04 10:33
Normal topic Ligand Docking with Rosetta Scripts memory problem
by Swillard » Thu, 2017-08-17 14:59
5
338 by rmoretti
Mon, 2017-09-04 10:10
Normal topic Relax is resulting in a Segmentation Fault
by brspurri » Thu, 2017-08-24 18:46
3
272 by brspurri
Sat, 2017-08-26 07:08
Normal topic -loops:fa_input not found in command line top-level context
by swarekwood » Thu, 2017-08-24 03:15
2
183 by swarekwood
Fri, 2017-08-25 05:08
Normal topic Allow region of protein to move in a certain direction
by sn » Wed, 2017-08-23 17:07
3
308 by rmoretti
Thu, 2017-08-24 11:00
Normal topic extract_pdb application parse error with silent file
by staciekim » Tue, 2017-08-22 12:39
5
334 by rmoretti
Thu, 2017-08-24 08:19
Normal topic Running snugdock was crashed by "segmentation fault"
by Sunyp_IM » Mon, 2017-08-21 05:03
3
246 by rmoretti
Tue, 2017-08-22 09:03
Normal topic The problems on pdb renumbering
by Sunyp_IM » Sun, 2017-08-20 06:39
0
165 by Sunyp_IM
Sun, 2017-08-20 06:39
Normal topic Ligand params file proton_chi parameters
by staciekim » Thu, 2017-08-17 14:50
2
194 by staciekim
Thu, 2017-08-17 17:06
Normal topic Getting error with Rosetta "antibody.linuxgccrelease" command
by Sunyp_IM » Mon, 2017-08-07 19:40
1
185 by smlewis
Tue, 2017-08-15 23:19
Normal topic Parse error while reading in XML file in ROSETTA Scripts
by rweisse » Fri, 2014-08-29 03:24
5
2,897 by a-eatemadi@razi...
Sun, 2017-08-06 03:49
Normal topic MPdocking I_sc
by jrcf » Mon, 2017-07-31 16:10
1
157 by rmoretti
Thu, 2017-08-03 09:29
Normal topic Error src/core/scoring/MembraneTopology.cc line: 139
by Daniel Hall » Thu, 2017-07-13 04:58
6
519 by rmoretti
Tue, 2017-07-18 09:00
Normal topic rosetta app
by MA » Wed, 2017-07-05 06:52
5
421 by smlewis
Tue, 2017-07-11 07:53
Normal topic SnugDocking a VHH:antigen complex possible?
by David Weis » Thu, 2017-02-16 05:57
7
969 by rmoretti
Thu, 2017-07-06 13:00
Normal topic conformational sampling of multi domain protein
by dhirajks » Tue, 2017-07-04 11:20
4
340 by jrporter
Wed, 2017-07-05 06:30
Normal topic Converting -patch replonly residues to original sequence
by subha » Mon, 2017-06-26 13:39
8
597 by smlewis
Tue, 2017-07-04 15:42
Normal topic Packstat application output
by Vedasheersh » Mon, 2017-07-03 02:45
1
190 by rmoretti
Mon, 2017-07-03 09:17
Normal topic How to minimize the decoys obtained from backrub?
by Vedasheersh » Wed, 2017-06-14 10:26
5
463 by SenyorDrew
Fri, 2017-06-30 09:47
Hot topic Errors in Getting Erraser to run
by belousoff » Thu, 2017-06-01 16:13
15
953 by belousoff
Mon, 2017-06-26 16:46
Normal topic Error Interface analyser
by jrcf » Thu, 2017-06-22 12:55
1
207 by smlewis
Thu, 2017-06-22 13:31
Normal topic Up to date Vall database
by JadAbbass » Sat, 2013-06-29 10:35
3
2,058 by rmoretti
Tue, 2017-06-20 09:02
Normal topic domain:domain fusion
by felipet » Thu, 2017-06-15 13:13
5
480 by felipet
Fri, 2017-06-16 11:42
Normal topic error extracting PDB from silent from AbinitioRelax with constraints
by attesor » Wed, 2017-06-14 04:15
2
240 by smlewis
Fri, 2017-06-16 07:35
Normal topic How to run simulations with non-canonical amino acids?
by Denise » Thu, 2017-06-08 07:50
4
429 by Denise
Thu, 2017-06-15 04:26
Normal topic How to find cluster core structure?
by assignfit » Thu, 2012-03-29 20:35
7
2,130 by attesor
Wed, 2017-06-14 07:32
Hot topic rosettaCM not recognizing Mn atom
by banshee » Mon, 2016-09-12 23:33
18
2,290 by smlewis
Mon, 2017-06-12 06:44
Normal topic Error with -patch_selectors
by subha » Tue, 2017-06-06 14:40
4
377 by subha
Fri, 2017-06-09 15:42
Normal topic Including waters in RosettaCM
by ajkal » Thu, 2017-04-27 11:59
9
984 by rpavlov
Tue, 2017-06-06 11:45
Normal topic Cartesian-space refinement
by sjyang7 » Wed, 2017-05-31 19:34
5
573 by sjyang7
Sat, 2017-06-03 06:09
Normal topic Adding water interactions when docking a ligand with Rosetta 3.7.
by brspurri » Thu, 2017-06-01 09:37
2
307 by brspurri
Thu, 2017-06-01 10:58
Hot topic a trouble during floppytail modeling
by chenchaozhao » Tue, 2011-03-15 03:59
39
13,299 by smlewis
Thu, 2017-06-01 10:02
Normal topic sequence design to enhance Fc / Fc-g Receptor binding
by jarod » Tue, 2017-05-23 09:00
1
224 by jadolfbr
Thu, 2017-06-01 10:00
Normal topic RosettaCM -weights, fragments and relax
by jsv » Tue, 2017-05-09 10:20
5
660 by rmoretti
Thu, 2017-06-01 08:52
Normal topic Partial Active Site Design for a Novel Substrate
by Derek » Wed, 2017-05-17 19:41
1
223 by rmoretti
Thu, 2017-05-18 13:51
Normal topic Error in a new docking
by jrcf » Wed, 2017-05-17 19:26
1
314 by everyday847
Wed, 2017-05-17 20:03
Normal topic Ligand Docking with RosettaScripts gives a ParsedProtocol exception
by brspurri » Sun, 2017-05-14 17:51
2
356 by brspurri
Mon, 2017-05-15 11:48
Normal topic Regarding the efficiency of the new low resolution ligand-docking movement “Transform”.
by Martin Floor » Mon, 2017-05-15 09:19
2
290 by Martin Floor
Mon, 2017-05-15 11:13
Normal topic Model two domain protein
by sn » Sat, 2017-05-06 13:21
1
233 by rmoretti
Mon, 2017-05-15 08:54
Normal topic weights for pH_protocol
by fmerino » Wed, 2017-04-26 07:14
1
255 by rmoretti
Thu, 2017-04-27 07:10
Normal topic New CSRosetta toolbox
by sn » Mon, 2017-04-24 12:42
3
373 by rmoretti
Tue, 2017-04-25 06:41
Normal topic Fast relax not working
by eyong123 » Fri, 2017-04-21 06:06
1
232 by rmoretti
Fri, 2017-04-21 07:41
Normal topic How to add a residue to one chain of an existing structure?
by sn » Mon, 2017-04-17 09:34
2
339 by sn
Thu, 2017-04-20 21:43
Normal topic Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM
by ajkal » Fri, 2017-04-14 08:44
3
470 by rmoretti
Thu, 2017-04-20 13:59
Normal topic Threading a sequence onto a template with ligands/metal ions included
by ajkal » Wed, 2017-04-19 11:53
2
366 by rmoretti
Thu, 2017-04-20 13:57
Normal topic Camelid antibody (VHH) modelling
by Ayoub Ksouri » Tue, 2017-04-04 22:52
13
1,591 by Ayoub Ksouri
Wed, 2017-04-19 15:16
Normal topic Rosetta_scripts error, Got some signal... It is:6
by jhm13c » Fri, 2017-04-14 14:05
1
225 by rmoretti
Sat, 2017-04-15 13:30
Normal topic Docking Prepack protocol working or not ?
by MJG » Mon, 2017-04-03 08:02
4
477 by MJG
Tue, 2017-04-04 23:59
Normal topic Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring
by brspurri » Wed, 2017-03-29 13:19
0
368 by brspurri
Wed, 2017-03-29 13:19
Normal topic Relax structure with metal cofactors
by h_trasatti » Tue, 2017-03-14 14:04
2
438 by rmoretti
Tue, 2017-03-28 08:51
Normal topic score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059'
by sn » Fri, 2017-03-24 12:26
1
249 by rmoretti
Fri, 2017-03-24 13:39
Normal topic Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB"
by brspurri » Fri, 2017-03-24 10:52
3
519 by brspurri
Fri, 2017-03-24 11:35
Normal topic conway2016 correction on beta-nov15?
by attesor » Wed, 2017-03-15 05:26
5
717 by attesor
Thu, 2017-03-16 01:21
Normal topic Membrane Abinitio modeling
by bharat_46010 » Mon, 2017-03-13 22:39
0
203 by bharat_46010
Mon, 2017-03-13 22:39
Normal topic Rosetta ScriptsFeatures Reporter issue
by David Weis » Sun, 2017-03-12 08:19
5
654 by David Weis
Mon, 2017-03-13 10:59
Normal topic Remodel with residue constraints
by sn » Fri, 2017-03-10 01:40
2
401 by rmoretti
Mon, 2017-03-13 08:01
Normal topic Ensemble docking causes segmentation fault 11
by David Weis » Mon, 2017-03-06 14:30
2
421 by David Weis
Mon, 2017-03-13 06:40
Normal topic KeyError: 'subject-id' in antibody modelling
by bogac » Mon, 2017-03-06 02:00
2
457 by bogac
Tue, 2017-03-07 02:11
Normal topic Loop modeling/closure for many structures
by sn » Mon, 2017-03-06 11:25
1
271 by rmoretti
Mon, 2017-03-06 12:39

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