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Rosetta 3 - Applications
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FAQ by admin » Mon, 2010-08-30 04:18 |
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by admin Fri, 2015-09-04 16:17 |
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Abinitio the Broker protocol by ac.research » Sun, 2019-03-24 03:56 |
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by ac.research Sun, 2019-03-24 03:56 |
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Specifying resfile in rosetta scripts by johnnytam100 » Mon, 2019-03-18 02:19 |
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50 |
by ajasja Thu, 2019-03-21 09:36 |
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hybrid approach - comparative and ab initio modelling by eprates » Wed, 2019-03-20 11:58 |
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by eprates Wed, 2019-03-20 11:58 |
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Two questions on the RosettaScripts flexbb-interfacedesign.xml by johnnytam100 » Fri, 2019-03-15 04:54 |
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by johnnytam100 Fri, 2019-03-15 04:54 |
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Docking to TM protein plus lipid bilayer by renedominik » Tue, 2019-03-12 06:58 |
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by renedominik Tue, 2019-03-12 06:58 |
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Adding bridged water interaction in constraint file by purvi24 » Thu, 2019-02-28 07:01 |
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150 |
by purvi24 Mon, 2019-03-11 06:43 |
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Any backrub expert? by johnnytam100 » Fri, 2019-03-01 01:58 |
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168 |
by johnnytam100 Sun, 2019-03-03 23:42 |
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How to correctly incorporate constraint information into ab initio structure prediction? by johnnytam100 » Tue, 2019-02-19 03:13 |
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114 |
by johnnytam100 Fri, 2019-03-01 01:36 |
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Unexpected Error with RosettaCM - by terry » Fri, 2019-02-22 14:26 |
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by terry Fri, 2019-02-22 14:26 |
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ProteinInterfaceDesign algorithm questions by tsztain » Mon, 2019-02-18 14:10 |
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by tsztain Mon, 2019-02-18 14:10 |
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Chemically bound ligand connection error by tsztain » Tue, 2019-01-01 18:40 |
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196 |
by tsztain Mon, 2019-02-18 09:55 |
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Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB by rlwoltz » Thu, 2019-01-24 19:43 |
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106 |
by rlwoltz Thu, 2019-01-24 19:43 |
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RosettaMP: issue with generating .lips4 file by ksy141 » Mon, 2019-01-21 17:17 |
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by ksy141 Mon, 2019-01-21 17:21 |
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Missing atoms and cannot find atom pose when refining ligand position with EM density by BuddySphinx » Mon, 2018-12-31 16:22 |
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by BuddySphinx Mon, 2018-12-31 16:22 |
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Model monomer to fit cryo density map of a filament by BuddySphinx » Wed, 2018-12-12 18:58 |
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by BuddySphinx Sun, 2018-12-30 16:49 |
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reporting bugs? (erraser in rosetta 3.10) by meyer » Fri, 2018-12-14 09:40 |
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by meyer Fri, 2018-12-14 09:40 |
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rosetta remodel and designing helix extension by dhirajks » Thu, 2018-12-13 19:34 |
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by dhirajks Thu, 2018-12-13 19:34 |
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Model truncated proteins by BuddySphinx » Wed, 2018-12-12 10:32 |
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174 |
by smlewis Wed, 2018-12-12 16:51 |
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molfile to params polymer python errors by tsztain » Sun, 2018-12-02 15:38 |
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368 |
by tsztain Tue, 2018-12-11 13:41 |
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ddG calculations to study point mutations by N.Chopra » Fri, 2018-12-07 12:36 |
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by jeliazkov Fri, 2018-12-07 12:51 |
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Threading with Ligand by ekwan » Thu, 2018-12-06 15:10 |
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by ekwan Thu, 2018-12-06 15:10 |
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Weighted scores?? by sizhang » Wed, 2018-12-05 15:22 |
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by sizhang Wed, 2018-12-05 15:22 |
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docking parse error by dave » Tue, 2018-12-04 08:41 |
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by rmoretti Tue, 2018-12-04 08:55 |
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SnugDock - What protocol should I use? by dfcoelho » Tue, 2018-11-27 07:32 |
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by dfcoelho Wed, 2018-11-28 08:07 |
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Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2 by AJVincelli » Sat, 2018-07-14 13:14 |
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by AJVincelli Sun, 2018-11-25 11:29 |
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Extract PDB structures from database by cossio » Mon, 2018-01-29 09:30 |
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526 |
by rmoretti Fri, 2018-11-23 11:23 |
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AbinitioRelax - Error with flags by jmschu » Wed, 2018-11-21 17:36 |
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136 |
by rmoretti Fri, 2018-11-23 07:59 |
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rosettaCM not recognizing Mn atom by banshee » Mon, 2016-09-12 23:33 |
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4,648 |
by rmoretti Wed, 2018-11-21 15:45 |
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Using residue patches in AbinitioRelax by kent » Fri, 2018-11-02 11:19 |
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by rmoretti Wed, 2018-11-21 15:40 |
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Problem passing a list of PDB files to minimize_with_cst by dolevrahat » Sun, 2018-11-18 16:13 |
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by rmoretti Wed, 2018-11-21 15:31 |
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ProteinInterfaceMS by rbjacob » Wed, 2018-10-24 11:31 |
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by rmoretti Wed, 2018-11-21 15:10 |
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denovo_density don't output a pdb file by ylwang » Sun, 2018-11-18 17:51 |
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by ylwang Sun, 2018-11-18 17:51 |
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Filter based on ligand_is_touching by Swillard » Mon, 2017-09-11 19:00 |
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by rmoretti Mon, 2018-11-12 14:35 |
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Ligand Docking with Rosetta Scripts memory problem by Swillard » Thu, 2017-08-17 14:59 |
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1,120 |
by rmoretti Mon, 2018-11-12 14:31 |
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RosettaAntibody core.pose.util error by rishibedi » Fri, 2018-10-05 01:31 |
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by jadolfbr Fri, 2018-11-09 14:53 |
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Predicting the part of protein strcutrue by ksy141 » Tue, 2018-10-16 11:47 |
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by jadolfbr Fri, 2018-11-09 14:28 |
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docking with capping groups by xavierfradera » Sun, 2018-11-04 16:17 |
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by xavierfradera Sun, 2018-11-04 16:17 |
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rosetta backrub by ladimafakher » Thu, 2018-10-04 08:01 |
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333 |
by ladimafakher Thu, 2018-11-01 03:47 |
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pmut_scan does not produce log file by fglaser » Wed, 2013-10-16 07:25 |
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1,922 |
by matteoferla Tue, 2018-10-30 02:54 |
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Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file? by lanselibai » Sun, 2014-11-16 10:26 |
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1,357 |
by G Mustafa Thu, 2018-10-18 05:31 |
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pmut_scan_parallel by G Mustafa » Wed, 2018-10-17 05:41 |
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by G Mustafa Wed, 2018-10-17 05:41 |
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Local docking: "manually place the two proteins facing each other" ? by mdeklotz » Fri, 2018-07-20 10:24 |
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415 |
by dfcoelho Tue, 2018-10-16 09:05 |
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Negative Design by rbjacob » Thu, 2018-10-11 09:18 |
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by smlewis Mon, 2018-10-15 08:42 |
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cartesian_ddg output by cossio » Thu, 2018-10-11 14:58 |
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226 |
by cossio Fri, 2018-10-12 04:43 |
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Warnings during relax by cossio » Thu, 2018-10-11 14:42 |
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by cossio Thu, 2018-10-11 14:42 |
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Surface Docking Application Crash by dkozuch » Sat, 2017-09-02 18:32 |
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2,065 |
by Anpu Tue, 2018-09-25 19:06 |
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Lammps or RosettaSurface by StevPChem » Fri, 2016-06-10 10:13 |
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1,471 |
by Anpu Tue, 2018-09-25 18:53 |
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Question on Designing with NCAAs by salvatta » Mon, 2018-09-10 10:09 |
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by rmoretti Thu, 2018-09-20 09:23 |
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SPLINE EPR_DISTANCE Constraint Error by mmw88 » Tue, 2018-09-18 14:39 |
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by rmoretti Thu, 2018-09-20 09:19 |
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Relax both peptide and ligands by matteoferla » Thu, 2018-09-13 03:11 |
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by smlewis Fri, 2018-09-14 10:34 |
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KIC with fragments versus Next generation KIC by Loki01 » Fri, 2018-09-07 05:06 |
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by smlewis Mon, 2018-09-10 11:48 |
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RosettaCM hybridize mover error after fragment picking by amorin » Thu, 2018-09-06 11:03 |
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by amorin Thu, 2018-09-06 11:10 |
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structure prediction by MA » Wed, 2018-09-05 00:50 |
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by MA Wed, 2018-09-05 00:50 |
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Flexpepdock I_hb scoring term by mbakalar » Fri, 2018-08-31 13:05 |
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by mbakalar Fri, 2018-08-31 13:06 |
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Relaxing protein-RNA complexes by rkirchdo » Fri, 2018-08-03 08:50 |
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by rmoretti Fri, 2018-08-24 11:28 |
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Loop modeling - the appropriate way to model a peptide insertion? by xding » Thu, 2018-08-02 15:30 |
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534 |
by smlewis Wed, 2018-08-08 15:48 |
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Calbur vs Energy Based Clustering by Swillard » Sun, 2018-07-01 13:24 |
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232 |
by rmoretti Fri, 2018-08-03 08:26 |
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Question on restraining receptor symmetry when docking ligand by subha » Fri, 2018-07-06 21:59 |
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by rmoretti Fri, 2018-08-03 08:16 |
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Relax with RDC data gives segmentation fault by sn » Mon, 2018-07-23 11:39 |
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by rmoretti Fri, 2018-08-03 07:54 |
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Membrane protein protocol on PyRosetta by jlapin » Sat, 2018-07-28 14:41 |
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by jlapin Wed, 2018-08-01 07:15 |
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PDB moves after relaxing by Hr13b » Fri, 2018-07-27 13:12 |
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by smlewis Fri, 2018-07-27 13:32 |
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SEWING and motif file generation by rbjacob » Thu, 2018-07-12 07:28 |
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572 |
by guffysl Thu, 2018-07-26 12:19 |
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Segmentation Fault in Fragment picking by ashu4487 » Fri, 2018-07-06 20:47 |
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by ashu4487 Mon, 2018-07-16 19:24 |
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The question of ligand docking with constraints by asbelx » Mon, 2018-06-11 09:39 |
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by rmoretti Thu, 2018-06-28 12:58 |
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How to preserve ACE/NME termini? by nitroamos » Tue, 2018-05-22 13:07 |
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by rmoretti Thu, 2018-06-28 12:44 |
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Multistate design output by tong » Wed, 2018-06-20 00:21 |
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by tong Sun, 2018-06-24 23:30 |
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The question about ligand score function by asbelx » Sun, 2018-06-17 02:07 |
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391 |
by asbelx Mon, 2018-06-18 22:34 |
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Multistate design on Rosetta - no generations produced by tong » Wed, 2018-06-13 00:36 |
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by smlewis Thu, 2018-06-14 10:26 |
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ab initio by malkeet.singh » Thu, 2018-05-10 05:34 |
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by malkeet.singh Mon, 2018-05-21 04:26 |
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multiple template homolgy modelling (Page: 1, 2)
by pdbb » Tue, 2012-10-30 08:12 |
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29,439 |
by rmoretti Fri, 2018-05-18 12:40 |
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Fastsaxs by Pernille » Mon, 2013-07-22 07:29 |
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17,398 |
by rmoretti Fri, 2018-05-18 12:35 |
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broker domain insertion by dhirajks » Sun, 2018-05-06 12:55 |
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251 |
by rmoretti Fri, 2018-05-18 12:28 |
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cartesian_ddg error: "Assertion `files.size() == 1` failed." by cossio » Fri, 2018-05-11 09:59 |
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378 |
by cossio Fri, 2018-05-18 09:51 |
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radius of gyration as constrain by dhirajks » Sat, 2018-05-05 23:00 |
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317 |
by smlewis Mon, 2018-05-07 11:42 |
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select_best_unique_ligand_poses - Ligand docking by subha » Thu, 2018-04-19 10:36 |
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491 |
by subha Fri, 2018-04-20 12:49 |
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DDG_monomer ΔΔG question by asbelx » Fri, 2018-04-20 03:31 |
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261 |
by asbelx Fri, 2018-04-20 03:33 |
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Clustering issue by Loki01 » Thu, 2018-03-29 10:16 |
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551 |
by Loki01 Thu, 2018-04-12 08:28 |
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splitfile.py by saladi » Fri, 2018-03-30 10:31 |
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279 |
by rmoretti Tue, 2018-04-10 15:34 |
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Coding denovo prediction from density maps in PyRosetta by ahmadkhalifa » Tue, 2018-04-10 11:43 |
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231 |
by rmoretti Tue, 2018-04-10 15:29 |
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DDG and interaction score problem by a-eatemadi@razi... » Mon, 2018-04-09 22:54 |
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201 |
by a-eatemadi@razi... Mon, 2018-04-09 22:54 |
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Problem with Scoring function and PlaceStub mover by a-eatemadi@razi... » Sat, 2018-04-07 09:22 |
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193 |
by a-eatemadi@razi... Sat, 2018-04-07 09:24 |
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FlexPepDock Multi chain receptor by evo_umich » Mon, 2018-04-02 12:13 |
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213 |
by evo_umich Mon, 2018-04-02 12:13 |
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Secondary Matching build_sets Error by enmirts » Wed, 2018-03-28 10:33 |
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194 |
by enmirts Wed, 2018-03-28 10:34 |
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cyclization_type flag in simple_cycpep_predict by Florent Langenfeld » Thu, 2018-01-04 09:22 |
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802 |
by Florent Langenfeld Tue, 2018-03-27 11:44 |
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ddg_monomer consumes massive RAM by cossio » Fri, 2018-03-09 17:02 |
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974 |
by rmoretti Mon, 2018-03-19 12:12 |
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DDG_monomer application by shadrinams » Mon, 2018-02-12 12:14 |
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575 |
by shadrinams Wed, 2018-03-14 07:46 |
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Rosetta Script for ddg_monomer protocol 16 by cossio » Thu, 2018-01-25 08:23 |
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478 |
by cossio Sun, 2018-03-11 09:12 |
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remodel gives no output by coomteng@gmail.com » Tue, 2018-03-06 07:40 |
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527 |
by rmoretti Wed, 2018-03-07 08:44 |
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cm_scripts by sn » Wed, 2018-02-14 11:00 |
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327 |
by rmoretti Wed, 2018-02-21 15:21 |
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Line search failed even after resetting Hessian by Loki01 » Wed, 2017-12-13 16:52 |
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1,149 |
by Loki01 Thu, 2018-02-15 13:54 |
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relax a protein with phosphorylated serine residue by zruan » Thu, 2018-02-01 09:18 |
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663 |
by rmoretti Tue, 2018-02-06 09:47 |
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running structure prediction with robetta server like automation by dhirajks » Mon, 2018-01-29 21:32 |
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423 |
by rmoretti Tue, 2018-01-30 07:51 |
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Modeling more than one protein loop at the same time by hzhekova » Mon, 2018-01-15 14:03 |
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693 |
by hzhekova Tue, 2018-01-16 10:31 |
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RosettaLigand Docking by Dinesh Kumar » Mon, 2018-01-15 20:54 |
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367 |
by rmoretti Tue, 2018-01-16 07:24 |
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Comparative modeling using a two chained template for a one chain structure by ahmadkhalifa » Mon, 2017-12-18 11:00 |
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319 |
by rmoretti Mon, 2018-01-15 16:14 |
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cartfrag_overlap error while running hybridize protocol by sn » Thu, 2017-12-21 10:24 |
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348 |
by rmoretti Mon, 2018-01-15 16:07 |
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Modeling the structure of camel single domain antibody by Sunyp_IM » Mon, 2018-01-08 00:34 |
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465 |
by Sunyp_IM Mon, 2018-01-08 00:55 |
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PEPSPEC by Neeraj » Wed, 2018-01-03 02:24 |
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270 |
by Neeraj Wed, 2018-01-03 02:24 |
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The error of InterfaceAnalyzer by asbelx » Thu, 2017-12-21 19:04 |
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850 |
by smlewis Sat, 2017-12-23 15:56 |
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