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Rosetta 3 - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
0
6,668 by admin
Fri, 2015-09-04 16:17
Normal topic SPLINE EPR_DISTANCE Constraint Error
by mmw88 » Tue, 2018-09-18 14:39
0
11 by mmw88
Tue, 2018-09-18 14:39
Normal topic Relax both peptide and ligands
by matteoferla » Thu, 2018-09-13 03:11
3
48 by smlewis
Fri, 2018-09-14 10:34
Normal topic KIC with fragments versus Next generation KIC
by Loki01 » Fri, 2018-09-07 05:06
3
42 by smlewis
Mon, 2018-09-10 11:48
Normal topic Question on Designing with NCAAs
by salvatta » Mon, 2018-09-10 10:09
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19 by salvatta
Mon, 2018-09-10 10:09
Normal topic RosettaCM hybridize mover error after fragment picking
by amorin » Thu, 2018-09-06 11:03
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22 by amorin
Thu, 2018-09-06 11:10
Normal topic structure prediction
by MA » Wed, 2018-09-05 00:50
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32 by MA
Wed, 2018-09-05 00:50
Normal topic Flexpepdock I_hb scoring term
by mbakalar » Fri, 2018-08-31 13:05
0
30 by mbakalar
Fri, 2018-08-31 13:06
Normal topic Relaxing protein-RNA complexes
by rkirchdo » Fri, 2018-08-03 08:50
1
60 by rmoretti
Fri, 2018-08-24 11:28
Normal topic Loop modeling - the appropriate way to model a peptide insertion?
by xding » Thu, 2018-08-02 15:30
6
147 by smlewis
Wed, 2018-08-08 15:48
Normal topic KofNConstraint used only in the final pose scoring
by allan.ferrari » Sun, 2018-07-08 18:18
2
100 by allan.ferrari
Sat, 2018-08-04 00:39
Normal topic Local docking: "manually place the two proteins facing each other" ?
by mdeklotz » Fri, 2018-07-20 10:24
4
107 by mdeklotz
Fri, 2018-08-03 09:42
Normal topic Calbur vs Energy Based Clustering
by Swillard » Sun, 2018-07-01 13:24
1
89 by rmoretti
Fri, 2018-08-03 08:26
Normal topic Question on restraining receptor symmetry when docking ligand
by subha » Fri, 2018-07-06 21:59
1
82 by rmoretti
Fri, 2018-08-03 08:16
Normal topic Relax with RDC data gives segmentation fault
by sn » Mon, 2018-07-23 11:39
1
81 by rmoretti
Fri, 2018-08-03 07:54
Normal topic Membrane protein protocol on PyRosetta
by jlapin » Sat, 2018-07-28 14:41
2
84 by jlapin
Wed, 2018-08-01 07:15
Normal topic PDB moves after relaxing
by Hr13b » Fri, 2018-07-27 13:12
1
60 by smlewis
Fri, 2018-07-27 13:32
Normal topic SEWING and motif file generation
by rbjacob » Thu, 2018-07-12 07:28
7
204 by guffysl
Thu, 2018-07-26 12:19
Normal topic Segmentation Fault in Fragment picking
by ashu4487 » Fri, 2018-07-06 20:47
2
115 by ashu4487
Mon, 2018-07-16 19:24
Normal topic Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2
by AJVincelli » Sat, 2018-07-14 13:14
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149 by AJVincelli
Sat, 2018-07-14 13:24
Normal topic The question of ligand docking with constraints
by asbelx » Mon, 2018-06-11 09:39
3
155 by rmoretti
Thu, 2018-06-28 12:58
Normal topic How to preserve ACE/NME termini?
by nitroamos » Tue, 2018-05-22 13:07
3
217 by rmoretti
Thu, 2018-06-28 12:44
Normal topic Multistate design output
by tong » Wed, 2018-06-20 00:21
6
205 by tong
Sun, 2018-06-24 23:30
Normal topic The question about ligand score function
by asbelx » Sun, 2018-06-17 02:07
2
158 by asbelx
Mon, 2018-06-18 22:34
Normal topic Multistate design on Rosetta - no generations produced
by tong » Wed, 2018-06-13 00:36
8
275 by smlewis
Thu, 2018-06-14 10:26
Normal topic ab initio
by malkeet.singh » Thu, 2018-05-10 05:34
3
240 by malkeet.singh
Mon, 2018-05-21 04:26
Hot topic multiple template homolgy modelling (Page: 1, 2)
by pdbb » Tue, 2012-10-30 08:12
51
26,473 by rmoretti
Fri, 2018-05-18 12:40
Normal topic Fastsaxs
by Pernille » Mon, 2013-07-22 07:29
9
10,860 by rmoretti
Fri, 2018-05-18 12:35
Normal topic broker domain insertion
by dhirajks » Sun, 2018-05-06 12:55
1
113 by rmoretti
Fri, 2018-05-18 12:28
Normal topic cartesian_ddg error: "Assertion `files.size() == 1` failed."
by cossio » Fri, 2018-05-11 09:59
2
175 by cossio
Fri, 2018-05-18 09:51
Normal topic radius of gyration as constrain
by dhirajks » Sat, 2018-05-05 23:00
1
128 by smlewis
Mon, 2018-05-07 11:42
Normal topic select_best_unique_ligand_poses - Ligand docking
by subha » Thu, 2018-04-19 10:36
4
255 by subha
Fri, 2018-04-20 12:49
Normal topic DDG_monomer ΔΔG question
by asbelx » Fri, 2018-04-20 03:31
0
164 by asbelx
Fri, 2018-04-20 03:33
Normal topic Clustering issue
by Loki01 » Thu, 2018-03-29 10:16
4
296 by Loki01
Thu, 2018-04-12 08:28
Normal topic splitfile.py
by saladi » Fri, 2018-03-30 10:31
1
154 by rmoretti
Tue, 2018-04-10 15:34
Normal topic Coding denovo prediction from density maps in PyRosetta
by ahmadkhalifa » Tue, 2018-04-10 11:43
1
121 by rmoretti
Tue, 2018-04-10 15:29
Normal topic DDG and interaction score problem
by a-eatemadi@razi... » Mon, 2018-04-09 22:54
0
113 by a-eatemadi@razi...
Mon, 2018-04-09 22:54
Normal topic Problem with Scoring function and PlaceStub mover
by a-eatemadi@razi... » Sat, 2018-04-07 09:22
0
107 by a-eatemadi@razi...
Sat, 2018-04-07 09:24
Normal topic FlexPepDock Multi chain receptor
by evo_umich » Mon, 2018-04-02 12:13
0
121 by evo_umich
Mon, 2018-04-02 12:13
Normal topic Secondary Matching build_sets Error
by enmirts » Wed, 2018-03-28 10:33
0
116 by enmirts
Wed, 2018-03-28 10:34
Normal topic cyclization_type flag in simple_cycpep_predict
by Florent Langenfeld » Thu, 2018-01-04 09:22
5
447 by Florent Langenfeld
Tue, 2018-03-27 11:44
Normal topic ddg_monomer consumes massive RAM
by cossio » Fri, 2018-03-09 17:02
7
553 by rmoretti
Mon, 2018-03-19 12:12
Normal topic DDG_monomer application
by shadrinams » Mon, 2018-02-12 12:14
2
356 by shadrinams
Wed, 2018-03-14 07:46
Normal topic Rosetta Script for ddg_monomer protocol 16
by cossio » Thu, 2018-01-25 08:23
2
310 by cossio
Sun, 2018-03-11 09:12
Normal topic remodel gives no output
by coomteng@gmail.com » Tue, 2018-03-06 07:40
3
292 by rmoretti
Wed, 2018-03-07 08:44
Normal topic cm_scripts
by sn » Wed, 2018-02-14 11:00
1
222 by rmoretti
Wed, 2018-02-21 15:21
Normal topic Line search failed even after resetting Hessian
by Loki01 » Wed, 2017-12-13 16:52
6
702 by Loki01
Thu, 2018-02-15 13:54
Normal topic relax a protein with phosphorylated serine residue
by zruan » Thu, 2018-02-01 09:18
3
440 by rmoretti
Tue, 2018-02-06 09:47
Normal topic running structure prediction with robetta server like automation
by dhirajks » Mon, 2018-01-29 21:32
1
265 by rmoretti
Tue, 2018-01-30 07:51
Normal topic Extract PDB structures from database
by cossio » Mon, 2018-01-29 09:30
1
269 by rmoretti
Tue, 2018-01-30 07:35
Normal topic Modeling more than one protein loop at the same time
by hzhekova » Mon, 2018-01-15 14:03
2
404 by hzhekova
Tue, 2018-01-16 10:31
Normal topic RosettaLigand Docking
by Dinesh Kumar » Mon, 2018-01-15 20:54
1
236 by rmoretti
Tue, 2018-01-16 07:24
Normal topic Comparative modeling using a two chained template for a one chain structure
by ahmadkhalifa » Mon, 2017-12-18 11:00
1
207 by rmoretti
Mon, 2018-01-15 16:14
Normal topic cartfrag_overlap error while running hybridize protocol
by sn » Thu, 2017-12-21 10:24
1
222 by rmoretti
Mon, 2018-01-15 16:07
Normal topic Modeling the structure of camel single domain antibody
by Sunyp_IM » Mon, 2018-01-08 00:34
1
259 by Sunyp_IM
Mon, 2018-01-08 00:55
Normal topic PEPSPEC
by Neeraj » Wed, 2018-01-03 02:24
0
179 by Neeraj
Wed, 2018-01-03 02:24
Normal topic  The error of InterfaceAnalyzer
by asbelx » Thu, 2017-12-21 19:04
3
533 by smlewis
Sat, 2017-12-23 15:56
Normal topic fixbb and ncaa's
by jarek » Thu, 2012-11-08 04:55
4
1,724 by jcminerlanl
Thu, 2017-12-21 10:13
Normal topic comparative modelling of a complex
by sdh_h » Sun, 2017-12-17 06:07
0
175 by sdh_h
Sun, 2017-12-17 06:07
Normal topic RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist.
by kamau » Fri, 2017-12-01 08:42
1
257 by kamau
Wed, 2017-12-13 14:31
Normal topic side chain repacking error
by malkeet.singh » Thu, 2017-12-07 04:49
4
461 by smlewis
Wed, 2017-12-13 09:54
Normal topic How to design the anitgen-antibody interface
by Sunyp_IM » Tue, 2017-12-12 18:44
0
195 by Sunyp_IM
Tue, 2017-12-12 18:44
Normal topic how to generate the whole molecule that contains all the symmetric chains
by Sunyp_IM » Sun, 2017-12-10 19:43
0
192 by Sunyp_IM
Sun, 2017-12-10 19:43
Normal topic Interesting scoring performance in flexpepdock against random peptides
by ziqi1234 » Fri, 2017-12-08 07:52
0
205 by ziqi1234
Fri, 2017-12-08 07:52
Normal topic output file in ddg calcualtion
by malkeet.singh » Sun, 2017-12-03 07:59
1
232 by malkeet.singh
Wed, 2017-12-06 02:02
Normal topic jd2 quits before reaching -nstruct # in roseta_scripts.mpi.linuxgccrelease
by fradom » Mon, 2017-11-27 02:55
6
719 by fradom
Tue, 2017-12-05 01:52
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
0
242 by a-eatemadi@razi...
Mon, 2017-12-04 23:52
Normal topic blast database error
by jessye » Sun, 2017-12-03 23:59
1
240 by smlewis
Mon, 2017-12-04 12:18
Normal topic terminal amino acids of gap has incomplete valency
by malkeet.singh » Wed, 2017-11-29 05:20
6
568 by rmoretti
Fri, 2017-12-01 12:05
Normal topic how to fix the ATP HETATM by using movemap or constraint file?
by ziqi1234 » Mon, 2017-11-20 06:43
9
1,013 by ziqi1234
Wed, 2017-11-22 06:21
Normal topic The Usage of motifgraft
by Sunyp_IM » Sun, 2017-11-19 20:22
2
429 by Sunyp_IM
Mon, 2017-11-20 19:20
Hot topic ddG calculation
by malkeet.singh » Sun, 2017-06-25 07:53
32
4,539 by malkeet.singh
Tue, 2017-11-14 04:33
Normal topic UnfoldedStateEnergyCalculator MPI Error
by colin.walsh.brown » Mon, 2017-11-13 09:43
1
250 by smlewis
Mon, 2017-11-13 10:43
Normal topic H3 modeling takes 10 days more?
by jessye » Fri, 2017-10-27 03:11
7
757 by jessye
Fri, 2017-11-03 20:15
Normal topic Rosetta RNA denovo huge memory usage (probable memory leak)
by cdegut » Mon, 2017-10-30 16:41
5
537 by cdegut
Fri, 2017-11-03 05:50
Normal topic Abinitio error: std::out_of_range: basic_string
by Harley Worthy » Tue, 2017-10-31 15:20
1
371 by Harley Worthy
Thu, 2017-11-02 08:53
Normal topic Error when running Remodel with EnzDes constraint file to extend c-terminal
by Jeffrey_Chen » Thu, 2017-01-19 06:20
4
1,219 by dfcoelho
Tue, 2017-10-17 11:52
Normal topic Ligand docking cannot open the protein file
by swarekwood » Tue, 2017-10-17 08:17
1
229 by rmoretti
Tue, 2017-10-17 09:03
Normal topic Surface Docking Crash (continued)
by dkozuch » Tue, 2017-09-12 06:18
1
281 by rmoretti
Tue, 2017-10-10 10:08
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
496 by rmoretti
Tue, 2017-10-10 10:05
Normal topic How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI
by kingljy » Sun, 2017-09-24 18:37
3
635 by rmoretti
Tue, 2017-10-10 09:58
Normal topic dssp
by MA » Thu, 2017-10-05 09:34
1
289 by rmoretti
Tue, 2017-10-10 09:54
Normal topic Dock two domains using topology broker
by sn » Thu, 2017-10-05 17:07
0
225 by sn
Thu, 2017-10-05 17:07
Normal topic problems with generating the params file
by dyu » Thu, 2017-09-28 13:34
2
366 by dyu
Thu, 2017-09-28 18:54
Normal topic Place ligand in a pocket
by sn » Fri, 2017-09-15 12:53
1
310 by rmoretti
Fri, 2017-09-15 13:11
Normal topic Surface Docking Application Crash
by dkozuch » Sat, 2017-09-02 18:32
11
1,342 by dkozuch
Sat, 2017-09-09 08:51
Hot topic Folppy Tail and Constraints
by sfulad2 » Fri, 2017-05-12 12:23
15
1,820 by smlewis
Fri, 2017-09-08 09:16
Normal topic Using different number of 9-mers (UPDATED)
by JadAbbass » Mon, 2017-08-28 07:20
1
396 by rmoretti
Mon, 2017-09-04 10:33
Normal topic Ligand Docking with Rosetta Scripts memory problem
by Swillard » Thu, 2017-08-17 14:59
5
794 by rmoretti
Mon, 2017-09-04 10:10
Normal topic Relax is resulting in a Segmentation Fault
by brspurri » Thu, 2017-08-24 18:46
3
645 by brspurri
Sat, 2017-08-26 07:08
Normal topic -loops:fa_input not found in command line top-level context
by swarekwood » Thu, 2017-08-24 03:15
2
437 by swarekwood
Fri, 2017-08-25 05:08
Normal topic Allow region of protein to move in a certain direction
by sn » Wed, 2017-08-23 17:07
3
722 by rmoretti
Thu, 2017-08-24 11:00
Normal topic extract_pdb application parse error with silent file
by staciekim » Tue, 2017-08-22 12:39
5
967 by rmoretti
Thu, 2017-08-24 08:19
Normal topic Running snugdock was crashed by "segmentation fault"
by Sunyp_IM » Mon, 2017-08-21 05:03
3
561 by rmoretti
Tue, 2017-08-22 09:03
Normal topic The problems on pdb renumbering
by Sunyp_IM » Sun, 2017-08-20 06:39
0
439 by Sunyp_IM
Sun, 2017-08-20 06:39
Normal topic Ligand params file proton_chi parameters
by staciekim » Thu, 2017-08-17 14:50
2
531 by staciekim
Thu, 2017-08-17 17:06
Normal topic Getting error with Rosetta "antibody.linuxgccrelease" command
by Sunyp_IM » Mon, 2017-08-07 19:40
1
485 by smlewis
Tue, 2017-08-15 23:19
Normal topic Parse error while reading in XML file in ROSETTA Scripts
by rweisse » Fri, 2014-08-29 03:24
5
4,140 by a-eatemadi@razi...
Sun, 2017-08-06 03:49
Normal topic MPdocking I_sc
by jrcf » Mon, 2017-07-31 16:10
1
350 by rmoretti
Thu, 2017-08-03 09:29
Normal topic Error src/core/scoring/MembraneTopology.cc line: 139
by Daniel Hall » Thu, 2017-07-13 04:58
6
1,100 by rmoretti
Tue, 2017-07-18 09:00

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