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Rosetta 3 - Applications
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FAQ by admin » Mon, 2010-08-30 04:18 |
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by admin Fri, 2015-09-04 16:17 |
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What means "[ ERROR ] TIME_STAMP: AbrelaxMover: finished ...NO_BATCH S_0001." by Corvin » Thu, 2020-04-02 00:16 |
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by Corvin Thu, 2020-04-02 00:16 |
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Docking of multichain oligomers by sdh_h » Wed, 2020-03-25 12:43 |
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by sdh_h Wed, 2020-03-25 12:43 |
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Any progress on getting intermediate structures during a design? by broomsday » Mon, 2020-03-16 06:46 |
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by vmulligan Tue, 2020-03-17 11:35 |
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application for affinity optimization by wentlewi » Fri, 2020-03-13 03:24 |
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by wentlewi Fri, 2020-03-13 03:24 |
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Is native.pdb necess for fragment_picker？ by ylwang » Thu, 2020-03-12 00:57 |
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by ylwang Thu, 2020-03-12 20:42 |
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"sparks failed" error when running "make_fragments.pl"? by Danielsebas » Tue, 2019-09-03 03:43 |
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by Jacob_Verburgt Tue, 2020-03-10 14:39 |
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score is 0 in the output? - RosettaScripts by chrisHKL » Thu, 2020-03-05 09:33 |
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by chrisHKL Thu, 2020-03-05 12:58 |
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Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring by brspurri » Wed, 2017-03-29 13:19 |
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by Morrian_Lynn Thu, 2020-03-05 10:07 |
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RosettaScript Segmentation Fault (crash log attached) by chrisHKL » Thu, 2020-03-05 07:21 |
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by chrisHKL Thu, 2020-03-05 09:11 |
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std::bad_alloc error after changing .xml script? by chrisHKL » Wed, 2020-03-04 11:44 |
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by jadolfbr Thu, 2020-03-05 07:02 |
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nstruct vs. trials? by chrisHKL » Mon, 2020-03-02 13:22 |
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by chrisHKL Wed, 2020-03-04 10:49 |
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Comparative Modeling Templates for Protein with Multiple Domains by Morrian_Lynn » Wed, 2020-03-04 10:42 |
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by Morrian_Lynn Wed, 2020-03-04 10:42 |
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Ddg filter threshold value? by chrisHKL » Fri, 2020-02-28 15:01 |
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by rmoretti Wed, 2020-03-04 09:56 |
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Imitating induced fit protocol in SymDock2 without any symmetry constraints by chenna » Fri, 2020-02-14 01:35 |
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by chenna Wed, 2020-03-04 03:24 |
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Filter for fixed-bb design using RosettaScript? by chrisHKL » Fri, 2020-02-28 19:47 |
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by vmulligan Mon, 2020-03-02 13:40 |
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antibody_numbering_converter cannot recognize the IMGT scheme by cryosky » Sat, 2020-02-29 23:12 |
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by jadolfbr Sun, 2020-03-01 14:54 |
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What is interface_cutoff_distance? And why did my residues outside this value get designed? by chrisHKL » Fri, 2020-02-28 14:52 |
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by chrisHKL Fri, 2020-02-28 14:52 |
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remodel ERROR: unrecognized mm_atom_type_name RGU by daniloboskovic » Sat, 2020-02-22 11:55 |
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by daniloboskovic Tue, 2020-02-25 08:28 |
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Rosetta scripts crash in CM workflow by jlburkhead » Tue, 2019-12-03 22:55 |
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by danpf Fri, 2020-02-21 18:37 |
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Options "-out:prefix" didn't work by maruhuang » Tue, 2019-09-10 05:42 |
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by danpf Fri, 2020-02-21 18:32 |
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Protein-Protein Docking or Comparative Modeling by Morrian_Lynn » Wed, 2020-01-29 19:01 |
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by danpf Fri, 2020-02-21 18:23 |
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How can I model ligands in comparative modeling by Morrian_Lynn » Thu, 2020-02-20 09:57 |
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by danpf Fri, 2020-02-21 17:05 |
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Docking to TM protein plus lipid bilayer by renedominik » Tue, 2019-03-12 06:58 |
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by renedominik Tue, 2020-02-18 01:36 |
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Error with the mpi version of simple_cycpep_predict by Florent Langenfeld » Wed, 2020-02-05 05:16 |
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by vmulligan Mon, 2020-02-10 11:07 |
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get an increased energy after energy minimization when using different score functions for repacking and energy minimization by xinmiaohe » Fri, 2020-02-07 11:59 |
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by xinmiaohe Fri, 2020-02-07 13:52 |
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error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease by xinmiaohe » Thu, 2020-01-30 22:09 |
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by xinmiaohe Fri, 2020-01-31 08:23 |
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Error during single state design by sujigeorge1979 » Sat, 2020-01-18 00:37 |
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by rmoretti Thu, 2020-01-30 15:42 |
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fixing sequence during grafting in antibody_designer by COM » Fri, 2020-01-24 11:38 |
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by jadolfbr Tue, 2020-01-28 09:13 |
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appropriate sampling for protein docking to a multi chain assembly by SWM » Fri, 2020-01-24 11:22 |
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by SWM Fri, 2020-01-24 11:22 |
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Limit on backbone movement in relax? by SWM » Fri, 2020-01-24 07:35 |
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by SWM Fri, 2020-01-24 07:35 |
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docking with capping groups by xavierfradera » Sun, 2018-11-04 16:17 |
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by maral.adeli-kou... Wed, 2020-01-22 12:41 |
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Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
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by Martin Floor Tue, 2020-01-21 11:15 |
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How to freeze ligand during FastRelax? by dnamkr » Thu, 2020-01-02 14:53 |
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by aloshbau Fri, 2020-01-10 16:48 |
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cartfrag_overlap error while running hybridize protocol by sn » Thu, 2017-12-21 10:24 |
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by dnamkr Mon, 2019-12-30 11:43 |
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Can remodel really handle multiple insertions in one simulation? by lanselibai » Sat, 2019-12-28 12:51 |
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by lanselibai Sat, 2019-12-28 12:51 |
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Remodel: the pose does not have residue with chain=H, PDBnum=114 by lanselibai » Wed, 2019-12-25 13:35 |
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by lanselibai Fri, 2019-12-27 09:38 |
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RosettaCM hybridize mover error after fragment picking by amorin » Thu, 2018-09-06 11:03 |
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by dnamkr Thu, 2019-12-26 10:22 |
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Error Implementing Match Style Constraints by pwging13 » Thu, 2019-12-19 09:53 |
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by pwging13 Thu, 2019-12-19 09:53 |
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using DARC in rosetta by syntekabio2019 » Thu, 2019-12-12 01:27 |
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by syntekabio2019 Thu, 2019-12-12 01:27 |
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using piper-flexpepdock by syntekabio2019 » Thu, 2019-12-12 01:22 |
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by syntekabio2019 Thu, 2019-12-12 01:22 |
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Docking the border segments of coiled coils in parallel orientation by Corvin » Mon, 2019-12-02 02:00 |
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by Corvin Mon, 2019-12-02 02:00 |
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Issue with Rosetta LinkResidues Script by adityapadhi » Wed, 2019-11-20 22:00 |
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by JackMaguire Fri, 2019-11-22 13:45 |
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Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0. by daniloboskovic » Fri, 2019-11-08 08:24 |
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by daniloboskovic Fri, 2019-11-08 08:27 |
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running in MPI mode and multiple scores per output PDB file? by dantimatter » Wed, 2019-10-30 09:42 |
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by dantimatter Wed, 2019-11-06 09:51 |
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Alanine Scanning for 1 Protein (no interface) by mags33 » Fri, 2019-10-25 10:08 |
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by mags33 Wed, 2019-11-06 09:35 |
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GrowLigand by allan.ferrari » Sat, 2019-10-19 05:32 |
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by allan.ferrari Tue, 2019-11-05 16:52 |
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Warnings during relax by cossio » Thu, 2018-10-11 14:42 |
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by rmoretti Mon, 2019-11-04 13:56 |
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Symmetry mode in Remodel for N-terminal extension by yvonne.chan2 » Mon, 2019-11-04 13:41 |
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by yvonne.chan2 Mon, 2019-11-04 13:41 |
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cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else? by dantimatter » Wed, 2019-10-16 14:59 |
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by dantimatter Wed, 2019-10-30 09:43 |
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An error with score app by Genta » Tue, 2019-10-29 18:46 |
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by Genta Tue, 2019-10-29 18:46 |
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antibody protocol fails by hamedkhakzad » Mon, 2019-08-19 07:43 |
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by smlewis Tue, 2019-10-22 09:45 |
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Speed problem when running RosettaLigand ligand docking by Nicole Deng » Tue, 2019-10-08 04:29 |
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by Nicole Deng Fri, 2019-10-18 19:09 |
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change number of output pose files written out (default=50) in ligand docking XML script by hdelrisco » Fri, 2019-10-18 13:50 |
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by hdelrisco Fri, 2019-10-18 17:16 |
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denovo modelling on a virus-coat protein dimer by aseem121 » Wed, 2019-10-16 06:55 |
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by danpf Wed, 2019-10-16 13:03 |
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Make error during installation of updated ncbi-blast-2.9.0+-src plus error with nr-database by Corvin » Tue, 2019-10-01 02:04 |
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by Corvin Tue, 2019-10-15 01:12 |
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"install_dependencies.pl" script: an optimization of HDD space during nr-pfilt data extracting and formatting stage by Corvin » Thu, 2019-10-10 02:20 |
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by danpf Thu, 2019-10-10 09:55 |
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"Make_fragments.pl" can't connect to dependencies links by Corvin » Wed, 2019-09-04 23:54 |
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by Corvin Thu, 2019-10-10 01:12 |
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Segment File Gen - no ouput by CATarr » Wed, 2019-10-09 19:05 |
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by CATarr Wed, 2019-10-09 19:05 |
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how to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:40 |
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by xinmiaohe Fri, 2019-10-04 08:54 |
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Energy function and iteration script files by michelleqyh » Fri, 2019-09-27 09:06 |
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by smlewis Fri, 2019-09-27 11:54 |
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Structure prediction using true distance and angle constraint by maruhuang » Wed, 2019-08-21 02:29 |
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by maruhuang Thu, 2019-09-26 18:52 |
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how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot? by Danielsebas » Tue, 2019-09-24 03:51 |
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by smlewis Tue, 2019-09-24 12:43 |
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Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress) by Danielsebas » Mon, 2019-09-23 03:24 |
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by smlewis Mon, 2019-09-23 11:42 |
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antibody modeling error by mxp » Mon, 2019-09-16 18:29 |
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by mxp Mon, 2019-09-23 01:40 |
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Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease by bdzhh » Tue, 2019-09-17 17:02 |
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by jadolfbr Thu, 2019-09-19 08:53 |
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Can I use rosetta binaries built in one linux system to another linux system? by Danielsebas » Wed, 2019-09-18 06:49 |
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by rmoretti Wed, 2019-09-18 10:36 |
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how to make "static" built binaries use multiple cpus like "mpi"? by Danielsebas » Wed, 2019-09-18 06:41 |
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by rmoretti Wed, 2019-09-18 10:21 |
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Error with Formatdb of legacy blast when running "install_dependencies.pl"? by Danielsebas » Mon, 2019-09-16 09:30 |
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by Danielsebas Tue, 2019-09-17 01:03 |
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How to analyse multiple silent files from "Abinitiorelax" output to find best models? by Danielsebas » Tue, 2019-09-10 10:01 |
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by smlewis Mon, 2019-09-16 12:22 |
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"Install_dependencies.pl" gives "Aborted" when downloading "nr" database? by Danielsebas » Sat, 2019-09-14 08:53 |
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by danpf Mon, 2019-09-16 09:51 |
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How to make new VALL database? by Danielsebas » Sun, 2019-09-08 02:16 |
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by Danielsebas Wed, 2019-09-11 00:44 |
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"make" error in "pdb2vall/structure_profile_scripts/DEPTH-CLONE-2.8.7" by Danielsebas » Mon, 2019-09-02 08:14 |
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by Danielsebas Sun, 2019-09-08 02:08 |
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extract docking pose from ligand docking silent file by Ruska322 » Sat, 2019-09-07 05:21 |
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by Ruska322 Sat, 2019-09-07 05:21 |
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Unable to understand fragment picking tutorial points. by Danielsebas » Thu, 2019-09-05 03:44 |
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by danpf Fri, 2019-09-06 11:29 |
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ligand docking with MPI by Ruska322 » Wed, 2019-09-04 03:47 |
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by Ruska322 Fri, 2019-09-06 07:13 |
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Rosetta make_fragments.pl error? by Danielsebas » Mon, 2019-09-02 07:51 |
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by Danielsebas Thu, 2019-09-05 03:35 |
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/database folder after running "install_dependencies.pl" size 657 GB? by Danielsebas » Tue, 2019-09-03 03:32 |
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by danpf Tue, 2019-09-03 10:15 |
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Rosetta fragment tools installation error by Danielsebas » Thu, 2019-08-29 02:17 |
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by Danielsebas Sun, 2019-09-01 02:38 |
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how to find help informations on rosetta_scripts in rosetta3.10 by xinmiaohe » Mon, 2019-08-26 14:48 |
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by xinmiaohe Tue, 2019-08-27 08:37 |
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A problem with "make_fragments.pl" script dependencies by Corvin » Fri, 2019-08-16 04:30 |
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by Corvin Tue, 2019-08-27 00:46 |
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can anyone help me correct this script to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:23 |
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by xinmiaohe Mon, 2019-08-26 18:16 |
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RosettaMatch by xingqing326 » Mon, 2019-07-22 13:14 |
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by rmoretti Mon, 2019-08-26 12:57 |
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"Angle constraint: 0-length bonds" error by purvi24 » Sun, 2019-07-28 10:09 |
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by rmoretti Mon, 2019-08-26 12:49 |
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PDB file name too long to be handled by file system by dave » Thu, 2019-08-08 03:10 |
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by rmoretti Mon, 2019-08-26 12:17 |
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Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively? by johnnytam100 » Fri, 2019-08-23 21:10 |
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by rmoretti Mon, 2019-08-26 12:03 |
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how to run ala_scan.xml by xinmiaohe » Mon, 2019-08-26 09:38 |
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by xinmiaohe Mon, 2019-08-26 09:38 |
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ProteinInterfaceDesign algorithm questions by tsztain » Mon, 2019-02-18 14:10 |
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by rmoretti Sun, 2019-08-25 19:15 |
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Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo by zharmad » Fri, 2019-08-23 01:16 |
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by everyday847 Fri, 2019-08-23 04:08 |
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debug rosetta_scripts FunFolDes run by tatsiana.bylund » Sun, 2019-08-18 23:17 |
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by tatsiana.bylund Sun, 2019-08-18 23:17 |
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RNP structure prediction flags by daniloboskovic » Fri, 2019-08-16 11:10 |
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by daniloboskovic Fri, 2019-08-16 11:17 |
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How does the label in pdb files looks like when using ResiduePDBInfoHasLabel? by johnnytam100 » Fri, 2019-08-16 00:25 |
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by JackMaguire Fri, 2019-08-16 07:41 |
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Does it make sense if I do backrub after sequence design? by johnnytam100 » Thu, 2019-08-15 05:15 |
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by johnnytam100 Fri, 2019-08-16 00:20 |
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new BUNS for FunFolDes run by tatsiana.bylund » Wed, 2019-08-14 20:57 |
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by tatsiana.bylund Wed, 2019-08-14 20:57 |
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InterfaceAnalyzer：“too many tries in fill_missing_atoms!” by mxp » Tue, 2019-08-06 00:41 |
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by mxp Mon, 2019-08-12 18:42 |
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RosettaScripts LinkResidues by Yero » Fri, 2019-05-17 05:26 |
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by Yero Thu, 2019-07-18 01:39 |
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Usage of the TaskOperations "RestrictToCDRsAndNeighbors" by johnnytam100 » Wed, 2019-04-10 02:58 |
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by rmoretti Wed, 2019-07-10 10:10 |
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is it necessary to always run relax before any Rosetta by mainzer » Fri, 2019-04-12 01:35 |
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by rmoretti Wed, 2019-07-10 09:47 |
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protein interction design by Negarsardar » Wed, 2019-05-15 12:01 |
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by rmoretti Wed, 2019-07-10 09:24 |
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Mutating phosphorylated residues to "canonical" residues and vice versa by ValentinaSora » Mon, 2019-05-20 05:58 |
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by rmoretti Wed, 2019-07-10 09:22 |
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