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Rosetta 3 - Applications

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:18
0
6,828 by admin
Fri, 2015-09-04 16:17
Normal topic Relax with multiple small molecules
by jharamesh » Sun, 2019-05-26 19:34
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4 by jharamesh
Sun, 2019-05-26 19:34
Normal topic Sampling a wider range of RMSD of poses by Rosetta Dock
by johnnytam100 » Tue, 2019-05-21 22:28
1
32 by johnnytam100
Thu, 2019-05-23 20:52
Normal topic Choosing weight file for interface design?
by johnnytam100 » Tue, 2019-05-07 00:47
2
44 by johnnytam100
Tue, 2019-05-21 22:33
Normal topic Behavior of nstruct
by johnnytam100 » Wed, 2019-05-15 22:22
3
36 by johnnytam100
Tue, 2019-05-21 20:48
Normal topic Mutating phosphorylated residues to "canonical" residues and vice versa
by ValentinaSora » Mon, 2019-05-20 05:58
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21 by ValentinaSora
Mon, 2019-05-20 05:59
Normal topic RosettaScripts LinkResidues
by Yero » Fri, 2019-05-17 05:26
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134 by vmulligan
Fri, 2019-05-17 16:15
Normal topic protein protein interaction design
by Negarsardar » Wed, 2019-05-15 06:13
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47 by ajasja
Wed, 2019-05-15 15:40
Normal topic protein interction design
by Negarsardar » Wed, 2019-05-15 12:01
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29 by Negarsardar
Wed, 2019-05-15 12:01
Normal topic loop design for Conformational bias
by dhirajks » Thu, 2019-05-09 21:22
1
49 by jadolfbr
Fri, 2019-05-10 07:53
Normal topic Protein Protein Docking with Constraints
by ajaniharesh » Wed, 2019-04-10 07:26
1
76 by rmoretti
Thu, 2019-05-09 15:40
Normal topic Write error during saving of PDB-file after working with it in the Rosetta through Unix terminal
by Corvin » Thu, 2019-04-25 01:20
1
73 by rmoretti
Thu, 2019-05-09 15:31
Normal topic missing atom number 5 atom name CB
by ajaniharesh » Fri, 2019-04-26 12:08
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55 by rmoretti
Fri, 2019-04-26 12:13
Normal topic Coverage of sequence space?
by johnnytam100 » Sun, 2019-04-21 23:25
4
114 by johnnytam100
Thu, 2019-04-25 19:28
Normal topic Highly negative total score
by Ruchi_P_Jain » Wed, 2019-04-24 19:55
1
55 by nannemdp
Thu, 2019-04-25 07:58
Normal topic input file for loop modeling
by Negarsardar » Tue, 2019-04-16 10:21
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76 by rmoretti
Tue, 2019-04-16 11:07
Normal topic is it necessary to always run relax before any Rosetta
by mainzer » Fri, 2019-04-12 01:35
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74 by mainzer
Fri, 2019-04-12 01:35
Normal topic Usage of the TaskOperations "RestrictToCDRsAndNeighbors"
by johnnytam100 » Wed, 2019-04-10 02:58
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65 by johnnytam100
Wed, 2019-04-10 02:58
Normal topic How to specify only design surface residues and loops by RosettaScripts?
by johnnytam100 » Sun, 2019-04-07 21:47
4
121 by johnnytam100
Wed, 2019-04-10 02:48
Normal topic ERROR: Specified chain does not exist.
by ajaniharesh » Fri, 2019-04-05 11:14
2
111 by ajaniharesh
Tue, 2019-04-09 06:53
Normal topic Abinitio the Broker protocol
by ac.research » Sun, 2019-03-24 03:56
1
82 by rmoretti
Fri, 2019-04-05 00:18
Normal topic Segmentation Fault
by ajaniharesh » Fri, 2019-03-29 11:21
4
207 by ajaniharesh
Thu, 2019-04-04 07:07
Normal topic Threading a sequence onto a template with ligands/metal ions included
by ajkal » Wed, 2017-04-19 11:53
3
954 by ahmadkhalifa
Sun, 2019-03-31 23:27
Normal topic Threading with Ligand
by ekwan » Thu, 2018-12-06 15:10
1
151 by rmoretti
Fri, 2019-03-29 13:21
Normal topic reporting bugs? (erraser in rosetta 3.10)
by meyer » Fri, 2018-12-14 09:40
2
168 by everyday847
Fri, 2019-03-29 13:13
Normal topic Missing atoms and cannot find atom pose when refining ligand position with EM density
by BuddySphinx » Mon, 2018-12-31 16:22
1
141 by rmoretti
Fri, 2019-03-29 13:06
Normal topic Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB
by rlwoltz » Thu, 2019-01-24 19:43
1
184 by rmoretti
Fri, 2019-03-29 12:50
Normal topic ProteinInterfaceDesign algorithm questions
by tsztain » Mon, 2019-02-18 14:10
1
115 by rmoretti
Fri, 2019-03-29 12:44
Normal topic Unexpected Error with RosettaCM -
by terry » Fri, 2019-02-22 14:26
1
170 by rmoretti
Fri, 2019-03-29 12:25
Normal topic Docking to TM protein plus lipid bilayer
by renedominik » Tue, 2019-03-12 06:58
1
91 by rmoretti
Fri, 2019-03-29 10:11
Normal topic Two questions on the RosettaScripts flexbb-interfacedesign.xml
by johnnytam100 » Fri, 2019-03-15 04:54
1
89 by rmoretti
Fri, 2019-03-29 09:58
Normal topic hybrid approach - comparative and ab initio modelling
by eprates » Wed, 2019-03-20 11:58
1
93 by rmoretti
Fri, 2019-03-29 09:45
Normal topic Specifying resfile in rosetta scripts
by johnnytam100 » Mon, 2019-03-18 02:19
4
190 by rmoretti
Fri, 2019-03-29 09:30
Normal topic help surface_docking peptide on ice
by engand93 » Wed, 2019-03-27 02:43
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81 by engand93
Wed, 2019-03-27 02:43
Normal topic De novo water predictions using SPaDES
by MNP1986 » Mon, 2019-03-25 07:53
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72 by MNP1986
Mon, 2019-03-25 07:53
Normal topic Adding bridged water interaction in constraint file
by purvi24 » Thu, 2019-02-28 07:01
8
315 by purvi24
Mon, 2019-03-11 06:43
Normal topic Any backrub expert?
by johnnytam100 » Fri, 2019-03-01 01:58
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268 by johnnytam100
Sun, 2019-03-03 23:42
Normal topic How to correctly incorporate constraint information into ab initio structure prediction?
by johnnytam100 » Tue, 2019-02-19 03:13
2
218 by johnnytam100
Fri, 2019-03-01 01:36
Normal topic Chemically bound ligand connection error
by tsztain » Tue, 2019-01-01 18:40
2
260 by tsztain
Mon, 2019-02-18 09:55
Normal topic RosettaMP: issue with generating .lips4 file
by ksy141 » Mon, 2019-01-21 17:17
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133 by ksy141
Mon, 2019-01-21 17:21
Normal topic Model monomer to fit cryo density map of a filament
by BuddySphinx » Wed, 2018-12-12 18:58
2
205 by BuddySphinx
Sun, 2018-12-30 16:49
Normal topic rosetta remodel and designing helix extension
by dhirajks » Thu, 2018-12-13 19:34
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169 by dhirajks
Thu, 2018-12-13 19:34
Normal topic Model truncated proteins
by BuddySphinx » Wed, 2018-12-12 10:32
3
255 by smlewis
Wed, 2018-12-12 16:51
Normal topic molfile to params polymer python errors
by tsztain » Sun, 2018-12-02 15:38
5
487 by tsztain
Tue, 2018-12-11 13:41
Normal topic ddG calculations to study point mutations
by N.Chopra » Fri, 2018-12-07 12:36
1
154 by jeliazkov
Fri, 2018-12-07 12:51
Normal topic Weighted scores??
by sizhang » Wed, 2018-12-05 15:22
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128 by sizhang
Wed, 2018-12-05 15:22
Normal topic docking parse error
by dave » Tue, 2018-12-04 08:41
1
159 by rmoretti
Tue, 2018-12-04 08:55
Normal topic SnugDock - What protocol should I use?
by dfcoelho » Tue, 2018-11-27 07:32
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523 by dfcoelho
Wed, 2018-11-28 08:07
Normal topic Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2
by AJVincelli » Sat, 2018-07-14 13:14
1
375 by AJVincelli
Sun, 2018-11-25 11:29
Normal topic Extract PDB structures from database
by cossio » Mon, 2018-01-29 09:30
3
614 by rmoretti
Fri, 2018-11-23 11:23
Normal topic AbinitioRelax - Error with flags
by jmschu » Wed, 2018-11-21 17:36
1
192 by rmoretti
Fri, 2018-11-23 07:59
Hot topic rosettaCM not recognizing Mn atom
by banshee » Mon, 2016-09-12 23:33
20
5,003 by rmoretti
Wed, 2018-11-21 15:45
Normal topic Using residue patches in AbinitioRelax
by kent » Fri, 2018-11-02 11:19
1
227 by rmoretti
Wed, 2018-11-21 15:40
Normal topic Problem passing a list of PDB files to minimize_with_cst
by dolevrahat » Sun, 2018-11-18 16:13
1
189 by rmoretti
Wed, 2018-11-21 15:31
Normal topic ProteinInterfaceMS
by rbjacob » Wed, 2018-10-24 11:31
1
161 by rmoretti
Wed, 2018-11-21 15:10
Normal topic denovo_density don't output a pdb file
by ylwang » Sun, 2018-11-18 17:51
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131 by ylwang
Sun, 2018-11-18 17:51
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
784 by rmoretti
Mon, 2018-11-12 14:35
Normal topic Ligand Docking with Rosetta Scripts memory problem
by Swillard » Thu, 2017-08-17 14:59
5
1,210 by rmoretti
Mon, 2018-11-12 14:31
Normal topic RosettaAntibody core.pose.util error
by rishibedi » Fri, 2018-10-05 01:31
1
210 by jadolfbr
Fri, 2018-11-09 14:53
Normal topic Predicting the part of protein strcutrue
by ksy141 » Tue, 2018-10-16 11:47
1
204 by jadolfbr
Fri, 2018-11-09 14:28
Normal topic docking with capping groups
by xavierfradera » Sun, 2018-11-04 16:17
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150 by xavierfradera
Sun, 2018-11-04 16:17
Normal topic rosetta backrub
by ladimafakher » Thu, 2018-10-04 08:01
4
422 by ladimafakher
Thu, 2018-11-01 03:47
Normal topic pmut_scan does not produce log file
by fglaser » Wed, 2013-10-16 07:25
3
1,992 by matteoferla
Tue, 2018-10-30 02:54
Normal topic Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file?
by lanselibai » Sun, 2014-11-16 10:26
3
1,421 by G Mustafa
Thu, 2018-10-18 05:31
Normal topic pmut_scan_parallel
by G Mustafa » Wed, 2018-10-17 05:41
0
156 by G Mustafa
Wed, 2018-10-17 05:41
Normal topic Local docking: "manually place the two proteins facing each other" ?
by mdeklotz » Fri, 2018-07-20 10:24
5
520 by dfcoelho
Tue, 2018-10-16 09:05
Normal topic Negative Design
by rbjacob » Thu, 2018-10-11 09:18
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273 by smlewis
Mon, 2018-10-15 08:42
Normal topic cartesian_ddg output
by cossio » Thu, 2018-10-11 14:58
2
290 by cossio
Fri, 2018-10-12 04:43
Normal topic Warnings during relax
by cossio » Thu, 2018-10-11 14:42
0
182 by cossio
Thu, 2018-10-11 14:42
Normal topic Surface Docking Application Crash
by dkozuch » Sat, 2017-09-02 18:32
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2,239 by Anpu
Tue, 2018-09-25 19:06
Normal topic Lammps or RosettaSurface
by StevPChem » Fri, 2016-06-10 10:13
3
1,553 by Anpu
Tue, 2018-09-25 18:53
Normal topic Question on Designing with NCAAs
by salvatta » Mon, 2018-09-10 10:09
1
218 by rmoretti
Thu, 2018-09-20 09:23
Normal topic SPLINE EPR_DISTANCE Constraint Error
by mmw88 » Tue, 2018-09-18 14:39
2
318 by rmoretti
Thu, 2018-09-20 09:19
Normal topic Relax both peptide and ligands
by matteoferla » Thu, 2018-09-13 03:11
3
319 by smlewis
Fri, 2018-09-14 10:34
Normal topic KIC with fragments versus Next generation KIC
by Loki01 » Fri, 2018-09-07 05:06
3
404 by smlewis
Mon, 2018-09-10 11:48
Normal topic RosettaCM hybridize mover error after fragment picking
by amorin » Thu, 2018-09-06 11:03
0
293 by amorin
Thu, 2018-09-06 11:10
Normal topic structure prediction
by MA » Wed, 2018-09-05 00:50
0
154 by MA
Wed, 2018-09-05 00:50
Normal topic Flexpepdock I_hb scoring term
by mbakalar » Fri, 2018-08-31 13:05
0
153 by mbakalar
Fri, 2018-08-31 13:06
Normal topic Relaxing protein-RNA complexes
by rkirchdo » Fri, 2018-08-03 08:50
1
217 by rmoretti
Fri, 2018-08-24 11:28
Normal topic Loop modeling - the appropriate way to model a peptide insertion?
by xding » Thu, 2018-08-02 15:30
6
644 by smlewis
Wed, 2018-08-08 15:48
Normal topic Calbur vs Energy Based Clustering
by Swillard » Sun, 2018-07-01 13:24
1
290 by rmoretti
Fri, 2018-08-03 08:26
Normal topic Question on restraining receptor symmetry when docking ligand
by subha » Fri, 2018-07-06 21:59
1
228 by rmoretti
Fri, 2018-08-03 08:16
Normal topic Relax with RDC data gives segmentation fault
by sn » Mon, 2018-07-23 11:39
1
248 by rmoretti
Fri, 2018-08-03 07:54
Normal topic Membrane protein protocol on PyRosetta
by jlapin » Sat, 2018-07-28 14:41
2
297 by jlapin
Wed, 2018-08-01 07:15
Normal topic PDB moves after relaxing
by Hr13b » Fri, 2018-07-27 13:12
1
209 by smlewis
Fri, 2018-07-27 13:32
Normal topic SEWING and motif file generation
by rbjacob » Thu, 2018-07-12 07:28
7
694 by guffysl
Thu, 2018-07-26 12:19
Normal topic Segmentation Fault in Fragment picking
by ashu4487 » Fri, 2018-07-06 20:47
2
413 by ashu4487
Mon, 2018-07-16 19:24
Normal topic The question of ligand docking with constraints
by asbelx » Mon, 2018-06-11 09:39
3
527 by rmoretti
Thu, 2018-06-28 12:58
Normal topic How to preserve ACE/NME termini?
by nitroamos » Tue, 2018-05-22 13:07
3
552 by rmoretti
Thu, 2018-06-28 12:44
Normal topic Multistate design output
by tong » Wed, 2018-06-20 00:21
6
611 by tong
Sun, 2018-06-24 23:30
Normal topic The question about ligand score function
by asbelx » Sun, 2018-06-17 02:07
2
470 by asbelx
Mon, 2018-06-18 22:34
Normal topic Multistate design on Rosetta - no generations produced
by tong » Wed, 2018-06-13 00:36
8
843 by smlewis
Thu, 2018-06-14 10:26
Normal topic ab initio
by malkeet.singh » Thu, 2018-05-10 05:34
3
541 by malkeet.singh
Mon, 2018-05-21 04:26
Hot topic multiple template homolgy modelling (Page: 1, 2)
by pdbb » Tue, 2012-10-30 08:12
51
30,248 by rmoretti
Fri, 2018-05-18 12:40
Normal topic Fastsaxs
by Pernille » Mon, 2013-07-22 07:29
9
19,408 by rmoretti
Fri, 2018-05-18 12:35
Normal topic broker domain insertion
by dhirajks » Sun, 2018-05-06 12:55
1
294 by rmoretti
Fri, 2018-05-18 12:28
Normal topic cartesian_ddg error: "Assertion `files.size() == 1` failed."
by cossio » Fri, 2018-05-11 09:59
2
445 by cossio
Fri, 2018-05-18 09:51
Normal topic radius of gyration as constrain
by dhirajks » Sat, 2018-05-05 23:00
1
382 by smlewis
Mon, 2018-05-07 11:42
Normal topic select_best_unique_ligand_poses - Ligand docking
by subha » Thu, 2018-04-19 10:36
4
580 by subha
Fri, 2018-04-20 12:49
Normal topic DDG_monomer ΔΔG question
by asbelx » Fri, 2018-04-20 03:31
0
294 by asbelx
Fri, 2018-04-20 03:33

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