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Rosetta 3 - Applications
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FAQ by admin » Mon, 2010-08-30 04:18 |
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by admin Fri, 2015-09-04 16:17 |
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polymer docking using rosetta scripts by syntekabio2019 » Fri, 2020-11-27 01:51 |
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by rmoretti Fri, 2020-11-27 10:47 |
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Error: in membrane docking : Cannot split pose by membrane jump! Quitting... by Astghik » Tue, 2020-11-24 05:27 |
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by Astghik Thu, 2020-11-26 01:56 |
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Prevention of the negatively charged Nitrogen protonation by coupled_moves by Corvin » Wed, 2020-11-18 02:56 |
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by Corvin Wed, 2020-11-25 02:58 |
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How well does dG_seperate predict the binding energy in real experiment? by Sunyp_IM » Sun, 2020-11-22 22:22 |
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by Sunyp_IM Mon, 2020-11-23 19:20 |
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RosettaMP: issue with generating .lips4 file by ksy141 » Mon, 2019-01-21 17:17 |
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by noahC_noahDo Fri, 2020-11-20 11:29 |
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"option matching xxx not found in command line top-level context" error by Sunyp_IM » Fri, 2020-11-20 06:09 |
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by rmoretti Fri, 2020-11-20 06:36 |
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How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure? by Sunyp_IM » Sun, 2020-11-08 08:07 |
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by Brahm Yachnin Wed, 2020-11-18 17:21 |
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debug rosetta_scripts FunFolDes run by tatsiana.bylund » Sun, 2019-08-18 23:17 |
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by neelamraju.srid... Wed, 2020-11-18 05:47 |
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Membrane Abinitio modeling error by jkyan007 » Thu, 2020-10-29 03:30 |
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by noahC_noahDo Tue, 2020-11-17 10:35 |
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pepspec anchor dock by Astghik » Tue, 2020-10-20 05:31 |
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by Astghik Tue, 2020-11-17 04:38 |
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Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease after blueprint file reading by Corvin » Tue, 2020-06-30 00:36 |
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by Corvin Tue, 2020-11-10 01:22 |
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Using Rmsd RosettaScripts filter with alignment files by bjharris » Sun, 2020-11-08 15:51 |
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by rmoretti Sun, 2020-11-08 18:56 |
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core.pose.util: [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard by AlfredoKCL » Sat, 2020-11-07 18:21 |
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by AlfredoKCL Sat, 2020-11-07 18:21 |
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How to add additional rounds of design and optimization in Rosetta scripts? by Nicole Deng » Tue, 2020-11-03 19:05 |
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by Nicole Deng Thu, 2020-11-05 03:04 |
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Speed problem when running RosettaLigand ligand docking by Nicole Deng » Tue, 2019-10-08 04:29 |
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by Nicole Deng Tue, 2020-11-03 19:07 |
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antibody.mpi.linuxgccrelease some antibodies failing to model by drewaight » Mon, 2020-11-02 17:07 |
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by drewaight Mon, 2020-11-02 17:07 |
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ERROR: Unable to fill in missing atoms. by mieczyslaw » Tue, 2020-10-20 09:43 |
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by mieczyslaw Thu, 2020-10-29 07:52 |
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not knowing which one of three ways to run rosettascript by xinmiaohe » Tue, 2020-10-13 13:52 |
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by xinmiaohe Mon, 2020-10-19 13:18 |
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Scoring functions: talaris2013 incompatible versions by Smbat » Tue, 2020-10-13 06:18 |
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by Astghik Thu, 2020-10-15 00:48 |
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hbond_sr_bb and hbond_lr_bb for different chains by tylerborrman » Tue, 2020-10-13 13:41 |
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by rmoretti Wed, 2020-10-14 08:25 |
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neutral N-term and C-term by nawsad » Sun, 2013-06-09 10:20 |
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5,435 |
by helenah Thu, 2020-10-08 05:29 |
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Modelling of multi-component symmetrical structures by LanMei » Wed, 2020-10-07 09:58 |
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by LanMei Wed, 2020-10-07 09:58 |
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minimize_with_cst and convert_to_cst_file for ddG_monomer issues/confusion by Kharlamov1317a » Mon, 2020-09-21 08:46 |
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by Kharlamov1317a Wed, 2020-10-07 08:26 |
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Robetta ab initio - TrRosetta for membrane proteins by benhardy » Wed, 2020-09-30 08:42 |
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by benhardy Wed, 2020-09-30 08:42 |
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Membrane Abinitio modeling by bharat_46010 » Mon, 2017-03-13 22:39 |
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by benhardy Wed, 2020-09-30 04:24 |
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Input structure by Soler » Mon, 2020-09-28 13:18 |
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by ssrb Tue, 2020-09-29 12:37 |
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NCAA Rotamers for Cyclosporin by marinok » Mon, 2020-09-28 14:11 |
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by marinok Mon, 2020-09-28 14:11 |
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Trouble running MPI docking protocol, please help! by Rob_Barringer » Tue, 2020-08-18 06:40 |
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by Rob_Barringer Fri, 2020-09-25 05:45 |
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RosettaCM or FastRelax? by Tianyang89 » Wed, 2020-09-23 07:46 |
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by danpf Thu, 2020-09-24 13:44 |
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Sequence design with mixed fixbb-relax protocol by kszczepaniak » Thu, 2013-10-03 08:11 |
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by fede Wed, 2020-09-23 11:24 |
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I need some help for using pHDock applications(histidine protonation / pH-dependent binding) by leygkn » Tue, 2020-09-22 18:40 |
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by leygkn Tue, 2020-09-22 22:46 |
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When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error by Martin Floor » Thu, 2020-09-17 06:01 |
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by Martin Floor Tue, 2020-09-22 00:48 |
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Strong bias in sampling observed in RosettaDock by chenna » Thu, 2020-08-27 22:23 |
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by ssrb Sun, 2020-09-20 15:50 |
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Building loop extensions in a membrane protein with Remodel by benhardy » Tue, 2020-06-02 08:21 |
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by benhardy Sun, 2020-09-20 11:15 |
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Pepspec Anchor Dock by Soler » Fri, 2020-09-18 08:09 |
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by Soler Fri, 2020-09-18 08:09 |
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FASTA for Octopus by Smbat » Wed, 2020-09-16 05:40 |
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by rmoretti Wed, 2020-09-16 22:11 |
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Pepspec Anchor Dock by Soler » Wed, 2020-09-16 19:08 |
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by Soler Wed, 2020-09-16 19:08 |
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BuildPeptide - Using Phosphorylated and Sulfated Tyrosine by jlawrie » Thu, 2020-09-03 14:29 |
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by jlawrie Wed, 2020-09-16 10:05 |
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FlexPepDocking by jlawrie » Tue, 2020-09-15 12:52 |
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by jlawrie Tue, 2020-09-15 12:52 |
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'standard.wts' does not exist by almeida85 » Mon, 2020-09-14 02:26 |
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by rmoretti Mon, 2020-09-14 06:36 |
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Number of max allowed mutations from WT sequence by mouung » Fri, 2020-09-04 02:33 |
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by rmoretti Sun, 2020-09-06 10:10 |
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Scoring docking error by almeida85 » Wed, 2020-09-02 01:32 |
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by almeida85 Wed, 2020-09-02 06:14 |
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make_fragments.pl error by almeida85 » Mon, 2020-08-31 04:39 |
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by almeida85 Tue, 2020-09-01 01:29 |
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Extracting top score PIPER models by almeida85 » Mon, 2020-08-31 07:17 |
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by almeida85 Mon, 2020-08-31 07:17 |
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density scoring by Tianyang89 » Sat, 2020-08-29 04:54 |
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by danpf Sun, 2020-08-30 22:23 |
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RosettaAntibody3 - How can I model an extended H3? by brspurri » Fri, 2020-08-28 09:11 |
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by brspurri Fri, 2020-08-28 09:11 |
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Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB by rlwoltz » Thu, 2019-01-24 19:43 |
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by bjharris Sun, 2020-08-23 14:03 |
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Global Docking with carbohydrates by ChiauShu » Sat, 2020-08-22 20:16 |
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by ChiauShu Sat, 2020-08-22 20:16 |
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Successful RosettaCM? by jlawrie » Wed, 2020-08-19 06:53 |
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by jlawrie Thu, 2020-08-20 11:00 |
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Fewer than expected structures in clustering output by fabiotrovato » Thu, 2020-08-20 00:59 |
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by fabiotrovato Thu, 2020-08-20 00:59 |
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RosettaAntibody3 is failing with "Error: no input sequences were specified!" by brspurri » Sun, 2020-08-16 16:16 |
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by brspurri Tue, 2020-08-18 09:57 |
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clustering output file has few structures by fabiotrovato » Mon, 2020-08-17 11:37 |
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by fabiotrovato Mon, 2020-08-17 11:37 |
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RosettaCM by jlawrie » Fri, 2020-08-14 14:09 |
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by jlawrie Fri, 2020-08-14 14:09 |
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mpirun docking_protocol by NanB » Mon, 2020-08-03 11:38 |
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by ssrb Fri, 2020-08-14 09:18 |
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Docking-I_sc values do not correlate by jlawrie » Wed, 2020-08-12 08:08 |
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by jlawrie Wed, 2020-08-12 08:57 |
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Homology Modeling-no PDB output by jlawrie » Wed, 2020-08-12 06:30 |
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by jlawrie Wed, 2020-08-12 08:56 |
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Modeling-Using RosettaCM by jlawrie » Wed, 2020-08-12 08:46 |
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by jlawrie Wed, 2020-08-12 08:47 |
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Docking-RMS value nan by jlawrie » Wed, 2020-08-12 07:03 |
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by jlawrie Wed, 2020-08-12 07:27 |
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Error when trying docking protocol with different ligand by scyphs » Wed, 2020-08-05 04:37 |
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by scyphs Mon, 2020-08-10 08:09 |
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how to know the precedure of solving a actural bio problem? like interface design? by qq7678500549 » Thu, 2020-08-06 18:45 |
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by qq7678500549 Sun, 2020-08-09 18:59 |
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De novo water predictions using SPaDES by MNP1986 » Mon, 2019-03-25 07:53 |
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by matteoferla Tue, 2020-08-04 09:30 |
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Bug Report - Encoding issue by daniloboskovic » Tue, 2020-08-04 07:02 |
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by daniloboskovic Tue, 2020-08-04 07:02 |
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pepspec anchor dock by Andre Serobian » Tue, 2020-07-28 05:51 |
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by Andre Serobian Tue, 2020-07-28 23:26 |
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Zero residues error in docking by cjy318 » Tue, 2020-07-28 19:47 |
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by cjy318 Tue, 2020-07-28 19:47 |
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RosettaAntibody3 core.pose.util error by linhhoang157 » Tue, 2020-07-28 12:40 |
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by linhhoang157 Tue, 2020-07-28 12:40 |
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clean_pdb not working by Andre Serobian » Thu, 2020-07-23 04:48 |
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by rmoretti Tue, 2020-07-28 08:24 |
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Comparative modeling of metalloproteins by ctqwong » Sun, 2020-07-12 13:51 |
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by ctqwong Mon, 2020-07-27 01:48 |
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How to choose designed antibody by Sunyp_IM » Wed, 2020-06-24 10:06 |
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by jadolfbr Fri, 2020-07-24 07:24 |
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How many iterations of remodel is enough? by daniloboskovic » Thu, 2020-07-16 08:07 |
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by daniloboskovic Thu, 2020-07-16 08:14 |
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Translate mover chain X doesnot exist. by surya » Thu, 2020-07-09 08:36 |
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by rmoretti Tue, 2020-07-14 10:54 |
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Warning: Fold tree is not set properly for density scoring by ahansel » Mon, 2020-07-13 10:50 |
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by danpf Tue, 2020-07-14 10:27 |
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manually defining CDRs in antibody modelling by gard.nelson » Fri, 2020-07-10 13:31 |
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by gard.nelson Fri, 2020-07-10 13:31 |
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Problem with mpirun/mpiexec by ahansel » Fri, 2020-07-10 08:37 |
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by rmoretti Fri, 2020-07-10 09:59 |
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Segmentation Fault during prepacking by Sunyp_IM » Fri, 2020-06-12 11:24 |
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by Sunyp_IM Thu, 2020-07-09 18:40 |
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Metal Ion in symmetric design by tschiex » Wed, 2020-07-08 05:28 |
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by tschiex Wed, 2020-07-08 05:28 |
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PEPSPEC by Neeraj » Wed, 2018-01-03 02:24 |
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by Andre Serobian Wed, 2020-07-08 04:44 |
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Does antibody_numbering_converter support camelid antibody? by mxp » Tue, 2020-07-07 01:21 |
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by mxp Tue, 2020-07-07 01:21 |
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zero standard deviation of I_sc in protein-protein docking by rohi » Fri, 2020-07-03 22:19 |
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by rohi Fri, 2020-07-03 22:20 |
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OptimizeMembranePositionMover - This element is not expected by bjharris » Wed, 2020-07-01 23:21 |
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by bjharris Thu, 2020-07-02 11:09 |
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LoopModeler mover unable to determine cut point by gszwabowski » Mon, 2020-06-01 13:12 |
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by matteoferla Thu, 2020-07-02 07:27 |
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ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-07-02 07:05 |
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by Alison_Yajie Thu, 2020-07-02 07:10 |
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kcenters_clustering_of_fragments by bjharris » Mon, 2019-07-01 16:16 |
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by bjharris Wed, 2020-07-01 23:25 |
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Scoring after HBNet by HHL_SIUC » Wed, 2020-07-01 10:49 |
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by HHL_SIUC Wed, 2020-07-01 10:49 |
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Noncanonical amino acids by wsgosal » Tue, 2014-03-18 05:29 |
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3,383 |
by Nolanm15 Tue, 2020-06-30 08:43 |
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"core.kinematics.FoldTree" error upon running RAbD by Sunyp_IM » Fri, 2020-06-26 17:27 |
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by Sunyp_IM Fri, 2020-06-26 20:57 |
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ligand_docking ligand preparation by Alison_Yajie » Thu, 2020-05-21 10:21 |
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by Alison_Yajie Wed, 2020-06-24 12:38 |
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Ligand docking with constraint by Alison_Yajie » Wed, 2020-06-24 12:34 |
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by Alison_Yajie Wed, 2020-06-24 12:34 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Fri, 2020-06-19 08:58 |
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by Kotimedidhi Mon, 2020-06-22 16:19 |
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How to select docked models by Sunyp_IM » Mon, 2020-06-22 00:50 |
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by ssrb Mon, 2020-06-22 13:12 |
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Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex by benhardy » Mon, 2020-06-15 09:33 |
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by benhardy Fri, 2020-06-19 07:55 |
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Residue selector by Alison_Yajie » Wed, 2020-06-17 19:57 |
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by Alison_Yajie Thu, 2020-06-18 09:47 |
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Constraint generator by Alison_Yajie » Wed, 2020-06-17 20:14 |
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by Alison_Yajie Wed, 2020-06-17 20:35 |
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metalloprotein ab initio with glutamic acid by inorgchem » Tue, 2020-06-16 20:45 |
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by inorgchem Tue, 2020-06-16 20:45 |
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RosettaCM: An internal error has occurred when "Running the Hybridize mover" by haom » Mon, 2020-06-15 05:56 |
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by haom Tue, 2020-06-16 05:55 |
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The difference between the H1 regions of modeled camelid antibody and the crystal structure. by Sunyp_IM » Sun, 2020-06-07 02:34 |
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by nannemdp Sun, 2020-06-07 08:01 |
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The usage of antibody_H3.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 22:50 |
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by Sunyp_IM Thu, 2020-06-04 08:20 |
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"Residue 7 was disulfide bonded but had no partner" with antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-06-04 05:53 |
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by Sunyp_IM Thu, 2020-06-04 05:54 |
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RosettaAntibodyDesign: How can I run the protocol without allowing design? by brspurri » Tue, 2020-05-26 08:12 |
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by brspurri Wed, 2020-06-03 13:20 |
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AbinitioRelax detect_disulf_tolerance by aarono » Tue, 2020-06-02 00:13 |
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by aarono Tue, 2020-06-02 00:13 |
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