You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
Topic / Topic starter | Replies | Views | Last post | |
---|---|---|---|---|
Sticky:
FAQ by admin » Mon, 2010-08-30 04:18 |
0 |
17,271 |
by admin Fri, 2015-09-04 16:17 |
|
Hamiltonian Exchange by JSK » Mon, 2024-03-18 12:48 |
0 |
10 |
by JSK Mon, 2024-03-18 12:48 |
|
Error in score funtion "hack_elec 0.42" by intomybioverse » Sun, 2024-03-17 06:33 |
1 |
29 |
by rmoretti Mon, 2024-03-18 08:55 |
|
How to use rewrite_rosetta_script.py to update XML script file? by intomybioverse » Fri, 2024-03-15 06:44 |
2 |
55 |
by intomybioverse Sun, 2024-03-17 06:22 |
|
Deciding -nstruct for RNA FARFAR2 by mandar » Thu, 2024-03-07 22:16 |
3 |
114 |
by mandar Thu, 2024-03-14 22:25 |
|
Number of Monte Carlo Cycles for FARFAR2 by mandar » Tue, 2024-03-12 19:11 |
2 |
74 |
by mandar Tue, 2024-03-12 23:07 |
|
several question in mpensemble dock by lluoto » Tue, 2024-03-12 07:54 |
0 |
70 |
by lluoto Tue, 2024-03-12 07:54 |
|
Creation of crystal_complex.pdb for docking by HBenson » Mon, 2024-03-11 08:57 |
0 |
66 |
by HBenson Mon, 2024-03-11 08:57 |
|
Stub Libraries for DockWithHotspotMover by ayush_patel » Sat, 2024-03-09 22:43 |
0 |
60 |
by ayush_patel Sat, 2024-03-09 22:43 |
|
Error Run Blueprint File by ileanexis » Thu, 2024-03-07 10:28 |
0 |
62 |
by ileanexis Thu, 2024-03-07 10:28 |
|
How to debug the XML script file? by intomybioverse » Wed, 2024-03-06 06:32 |
2 |
101 |
by rmoretti Wed, 2024-03-06 06:51 |
|
BridgeChains mover deletes residues at break by kmj » Thu, 2024-02-22 12:14 |
0 |
213 |
by kmj Thu, 2024-02-22 12:14 |
|
remove membrane for RosettaMPdock by lluoto » Wed, 2023-12-06 06:22 |
2 |
463 |
by lluoto Wed, 2024-02-21 17:39 |
|
Errors about rifdock step 15 by ng98 » Thu, 2024-02-01 17:41 |
0 |
273 |
by ng98 Thu, 2024-02-01 17:41 |
|
PIPER-FlexPepDock [commercial user] by Skelly » Tue, 2024-01-23 16:14 |
0 |
268 |
by Skelly Tue, 2024-01-30 14:08 |
|
Inquiry about MPI-Rosetta: Issue with -nstruct Parameter by serena » Wed, 2024-01-24 00:59 |
1 |
191 |
by rmoretti Wed, 2024-01-24 08:46 |
|
Error about rifdocking step 15 by ng98 » Sun, 2024-01-21 16:30 |
4 |
323 |
by ng98 Tue, 2024-01-23 17:01 |
|
Memory Leak: Relax Density MPI RAM overusage kills process by mmfarrugia » Sun, 2023-12-31 12:02 |
5 |
408 |
by mmfarrugia Fri, 2024-01-12 10:35 |
|
the results obtained after docking using RosettaDock and ZDOCK by aha » Thu, 2024-01-04 21:13 |
1 |
252 |
by rmoretti Thu, 2024-01-11 14:39 |
|
Error about rifdocking step 12 by ng98 » Mon, 2024-01-08 16:27 |
3 |
348 |
by ng98 Tue, 2024-01-09 23:42 |
|
errors about RIFdocking by sia » Sun, 2022-07-24 20:45 |
7 |
2,607 |
by ng98 Mon, 2024-01-08 16:24 |
|
Broken structure of local docking of replicadock2 by Jun » Thu, 2023-12-28 00:26 |
0 |
227 |
by Jun Thu, 2023-12-28 00:26 |
|
Is Biopython required to run pdb_renumber.py? by ljjjxay » Wed, 2023-11-22 20:00 |
6 |
636 |
by ljjjxay Wed, 2023-12-06 19:24 |
|
analyze_flex_ddG.py by valebut » Tue, 2023-11-28 04:30 |
1 |
314 |
by Aleksandra Panfilova Tue, 2023-11-28 05:34 |
|
I want to refine my pdb file,but it has multiple breaks or has multiple loops missing resi by Edward » Sat, 2023-11-25 04:58 |
1 |
310 |
by Edward Sat, 2023-11-25 05:17 |
|
Error with SapScoreMetric (SimpleMetric sap_score not found in basic::datacache::DataMap) by Seongsung » Fri, 2023-11-24 05:09 |
0 |
224 |
by Seongsung Fri, 2023-11-24 13:14 |
|
Cannot install DAlphaBall by gerdos » Fri, 2023-10-13 07:55 |
1 |
548 |
by Seongsung Fri, 2023-11-24 04:52 |
|
nomenclature question in molfile_to_params_polymer.py in ncaa design by lei » Tue, 2023-11-21 09:47 |
2 |
285 |
by lei Wed, 2023-11-22 06:23 |
|
Match: Outputs with 0 hits for cst and clashes with sidechains by uka147 » Wed, 2023-11-08 06:11 |
0 |
231 |
by uka147 Thu, 2023-11-09 01:36 |
|
'Use_filters true' option - failure of AbInitio Relax application by Corvin » Wed, 2023-11-08 06:34 |
0 |
186 |
by Corvin Wed, 2023-11-08 06:34 |
|
Error with docking_prepack_protocol while executing the tutorial "Docking Flexible Proteins" by vitoralmeida1808 » Mon, 2023-11-06 09:43 |
0 |
205 |
by vitoralmeida1808 Mon, 2023-11-06 09:43 |
|
Are catalytic residues mutatable? by uka147 » Thu, 2023-10-26 03:49 |
3 |
548 |
by uka147 Mon, 2023-10-30 01:53 |
|
Docking to TM protein plus lipid bilayer by renedominik » Tue, 2019-03-12 06:58 |
4 |
3,556 |
by elpipasp Thu, 2023-10-19 04:37 |
|
ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42 by yliang20 » Wed, 2022-06-15 22:22 |
2 |
1,310 |
by jxw Wed, 2023-10-11 10:04 |
|
Dock cyclic peptide with non-canonical amino acids to protein target using rosetta flexpepdock? by lei » Mon, 2023-09-11 23:34 |
2 |
488 |
by lei Wed, 2023-09-13 19:35 |
|
ValueError("Path %s does not exist!" % path_name) for rna_helix.py by kameisel » Wed, 2023-08-16 00:39 |
2 |
494 |
by kameisel Wed, 2023-09-13 02:16 |
|
FixedBB design output no beta strands by tkoh » Fri, 2023-08-25 01:02 |
1 |
388 |
by rmoretti Tue, 2023-08-29 20:13 |
|
How do I compare the results of InterfaceAnalyzer using different trimers as input? by franz72 » Sun, 2023-08-06 10:10 |
0 |
290 |
by franz72 Sun, 2023-08-06 10:10 |
|
Rosetta Design: Non-canonical amino acid substrate not accepted by Friedrich Ehinger » Fri, 2023-08-04 00:09 |
2 |
526 |
by Friedrich Ehinger Fri, 2023-08-04 08:38 |
|
Multistate design issues with -run:msd_job_dist option and MSDMover by elaine.thai » Wed, 2020-05-13 18:07 |
2 |
3,049 |
by Jane_002 Thu, 2023-08-03 19:47 |
|
RECCESS-Rosetta Segmentation Fault with nonnatural residues by skorro » Tue, 2023-07-25 17:13 |
1 |
409 |
by skorro Fri, 2023-07-28 12:20 |
|
Antibody Structure Prediction - Error on antibody_H3 step: "Option matching -antibody:remodel not found in command line" by ramon-arg » Mon, 2023-07-24 17:56 |
0 |
287 |
by ramon-arg Mon, 2023-07-24 17:56 |
|
ERROR: ResidueType::add_ring: Requested atoms don't exist in this ResidueType! by walidabualafia » Thu, 2023-07-20 09:44 |
1 |
388 |
by rmoretti Thu, 2023-07-20 10:08 |
|
fragment_picker:[ ERROR ] UtilityExitException ERROR: can't open file: $ROSETTA/tools/fragment_tools/vall.jul19.2011.gz by yueyuedake » Wed, 2023-07-12 03:36 |
6 |
926 |
by yueyuedake Sun, 2023-07-16 19:17 |
|
rosetta_cm - ERROR: Assertion `tlen < slen` failed on File: src/core/fragment/util.cc:177 by ramon-arg » Thu, 2023-07-13 18:41 |
2 |
486 |
by ramon-arg Fri, 2023-07-14 07:47 |
|
Memory Leak in FragmentPicker.cxx11thread application by Corvin » Tue, 2023-07-11 06:04 |
0 |
288 |
by Corvin Thu, 2023-07-13 05:30 |
|
PyIgClassify cannot renumber and label CDRs my Nanobody-Antigen complex for RabD by WBNeT » Fri, 2023-07-07 10:58 |
1 |
432 |
by jadolfbr Mon, 2023-07-10 09:05 |
|
EMERALD method not working, Rosetta version not available for download by seba » Thu, 2023-05-04 08:14 |
6 |
1,380 |
by rmoretti Mon, 2023-07-10 08:57 |
|
cluster docked pdbs by kwu030 » Wed, 2023-06-14 22:48 |
1 |
544 |
by rmoretti Wed, 2023-06-28 12:36 |
|
Generating a new Vall database by vijay.anand » Tue, 2023-06-20 12:08 |
0 |
364 |
by vijay.anand Tue, 2023-06-20 12:08 |
|
Silent File Scores Missing: RNA Protein Complex Predition by axio23 » Fri, 2023-06-16 05:45 |
0 |
361 |
by axio23 Fri, 2023-06-16 05:45 |
|
non-zero ddG of binding even without mutations by top-gun98 » Wed, 2023-06-07 17:19 |
0 |
390 |
by top-gun98 Wed, 2023-06-07 17:19 |
|
CC (or similar) calculation for cryoEM fitting by almeida85 » Tue, 2023-05-16 01:32 |
2 |
646 |
by almeida85 Tue, 2023-05-23 08:23 |
|
dG_separated values comparison by almeida85 » Mon, 2023-04-24 03:34 |
0 |
514 |
by almeida85 Tue, 2023-05-16 01:02 |
|
Error with xml script by almeida85 » Tue, 2023-03-28 01:53 |
0 |
570 |
by almeida85 Tue, 2023-05-16 01:00 |
|
Simple_cycpep_predict with crosslinker BBMB by Ken » Tue, 2023-05-09 08:52 |
0 |
440 |
by Ken Tue, 2023-05-09 08:52 |
|
Docking one protein into interface between two other proteins by Cheems » Sat, 2023-05-06 09:49 |
3 |
806 |
by rmoretti Mon, 2023-05-08 13:14 |
|
Missing atoms, unable to fill in missing atoms by kwu030 » Fri, 2023-05-05 13:41 |
1 |
479 |
by rmoretti Fri, 2023-05-05 13:44 |
|
unable to generate the span file with "mp_span_from_pdb.default.linuxgccrelease" from a PDB file by Sajjad » Wed, 2022-11-30 11:40 |
1 |
4,109 |
by FJOM Wed, 2023-05-03 07:21 |
|
Problems with ligand when running RosettaLigand by Cat » Mon, 2013-05-20 15:58 |
6 |
6,886 |
by Aben Tue, 2023-04-18 01:31 |
|
XML validation failing by mb0261 » Fri, 2023-04-14 14:53 |
11 |
2,010 |
by mb0261 Mon, 2023-04-17 17:38 |
|
error in loop remodeling by syntekabio2019 » Wed, 2023-04-05 01:00 |
0 |
428 |
by syntekabio2019 Wed, 2023-04-05 01:01 |
|
Protein Protein Docking with Linker by mrinal » Mon, 2023-03-20 15:58 |
0 |
772 |
by mrinal Mon, 2023-03-20 15:58 |
|
core.pose.util: (0) {0} [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard by ldx022 » Thu, 2023-03-16 04:13 |
0 |
1,118 |
by ldx022 Thu, 2023-03-16 04:13 |
|
Lots of Prepacking Jobs for Snugdock Failing by katherinemccoy » Tue, 2023-02-28 18:17 |
0 |
2,282 |
by katherinemccoy Mon, 2023-03-13 19:10 |
|
ReplicaDock 2.0 Native vs Input Structure Flags Confusion by katherinemccoy » Tue, 2022-12-27 06:42 |
2 |
4,662 |
by katherinemccoy Tue, 2023-02-28 18:19 |
|
how to control alignment for energy_based_clustering by xfradera » Tue, 2023-02-28 10:13 |
0 |
1,822 |
by xfradera Tue, 2023-02-28 10:13 |
|
ligand_docking by yang » Thu, 2023-02-16 04:37 |
2 |
2,439 |
by yang Wed, 2023-02-22 19:18 |
|
St13runtime_error in Rosetta ligand docking by syntekabio2019 » Thu, 2023-02-09 18:18 |
2 |
3,008 |
by syntekabio2019 Sun, 2023-02-19 18:39 |
|
How to change the axes of "-spin" in docking_protocol by Zehui Zhou » Mon, 2023-02-13 22:06 |
0 |
2,108 |
by Zehui Zhou Mon, 2023-02-13 22:06 |
|
Comparing a prediction to the native structure and calculate RMSD for RNA by danwolf_33 » Thu, 2023-02-09 09:32 |
0 |
1,885 |
by danwolf_33 Thu, 2023-02-09 09:34 |
|
relax protein with multi-conformer bound ligand by xfradera » Thu, 2023-01-12 09:10 |
4 |
3,347 |
by rmoretti Mon, 2023-02-06 15:06 |
|
prepack - residue count fails by xfradera » Fri, 2023-01-27 06:36 |
0 |
1,174 |
by xfradera Fri, 2023-01-27 06:36 |
|
Different scoring applications (score vs score_aln vs score_jd2, etc.)? by cossio » Fri, 2014-12-26 07:19 |
3 |
4,684 |
by Patrícia Antunes Fri, 2023-01-20 11:55 |
|
snugdock(sequence position requested was greater than the number of residues in the pose) by lei » Thu, 2023-01-12 01:40 |
5 |
2,479 |
by lei Fri, 2023-01-20 08:11 |
|
Grafting using antibody.mpi.linuxgccrelease and specifying custom template which doesnt have pdb id. by SubhaK » Wed, 2023-01-18 23:33 |
0 |
925 |
by SubhaK Wed, 2023-01-18 23:33 |
|
Snugdock Error: The sequence position requested was greater than the number of residues by stannowitz » Tue, 2023-01-17 07:37 |
0 |
1,097 |
by stannowitz Tue, 2023-01-17 23:48 |
|
RosettaCM Ignoring Ligand by Delfosse57 » Sun, 2022-12-04 12:05 |
0 |
3,930 |
by Delfosse57 Sun, 2022-12-04 12:05 |
|
Unable to locate the "compute_ddg.py" file and running the RosettaMP protocol by Sajjad » Mon, 2022-11-28 14:09 |
3 |
4,923 |
by Sajjad Wed, 2022-11-30 11:50 |
|
The confussion about an example in tutorial in Rosetta Virtual Workshop 2020 by ldx022 » Tue, 2022-11-29 04:58 |
3 |
4,336 |
by ldx022 Tue, 2022-11-29 08:38 |
|
Score.sc file showing total score 0 for all protein structures created by aanshi » Wed, 2022-11-23 11:13 |
1 |
3,524 |
by nannemdp Mon, 2022-11-28 09:39 |
|
Help to understand docking results by rtorquato » Fri, 2022-11-25 12:05 |
0 |
1,478 |
by rtorquato Fri, 2022-11-25 12:05 |
|
snugdock: constrained backbone by mahendra » Mon, 2022-11-14 02:51 |
0 |
1,772 |
by mahendra Mon, 2022-11-14 02:51 |
|
Ligand Rotamer Control in Macther by Hirbond » Tue, 2022-10-25 13:01 |
0 |
1,715 |
by Hirbond Wed, 2022-10-26 12:57 |
|
Setting pivots points for GenKIC by almeida85 » Tue, 2022-10-25 02:32 |
0 |
1,656 |
by almeida85 Tue, 2022-10-25 02:32 |
|
Small molecule dimer/trimer/etc docking by lukasz » Tue, 2022-10-04 06:49 |
1 |
1,715 |
by rmoretti Tue, 2022-10-04 07:57 |
|
Symmetry definition question by mrconde96 » Sun, 2022-10-02 05:34 |
0 |
1,349 |
by mrconde96 Sun, 2022-10-02 05:34 |
|
Old Knotfind algorithm by Martin Floor » Thu, 2022-09-22 07:28 |
1 |
1,118 |
by rmoretti Fri, 2022-09-23 09:38 |
|
ReplicaDock2.0 demo fails with MPIFileBufJobDistributor: (1) [ ERROR ] by erpannec » Tue, 2022-08-09 05:42 |
4 |
1,808 |
by erpannec Thu, 2022-09-15 05:17 |
|
Prepacking a macrocycle for docking / preserving cyclization by almeida85 » Thu, 2022-09-08 06:54 |
0 |
825 |
by almeida85 Thu, 2022-09-08 06:54 |
|
Trehalose by jpfuenzalidawx » Thu, 2022-09-08 00:49 |
0 |
853 |
by jpfuenzalidawx Thu, 2022-09-08 00:49 |
|
Macrocycle from a C-terminal amidated peptide by almeida85 » Thu, 2022-08-18 07:53 |
0 |
909 |
by almeida85 Thu, 2022-08-18 07:53 |
|
Docking HeparinSulfate to proteins using GlycanDock by GebauerJ » Tue, 2022-08-16 07:44 |
0 |
915 |
by GebauerJ Tue, 2022-08-16 07:44 |
|
RIFdocking:Unable to locate database file chemical/residue_type_sets/fa_standard/residue_types/ by sia » Tue, 2022-08-02 20:06 |
2 |
1,793 |
by SeongRyeong Go Mon, 2022-08-15 18:31 |
|
simple_cycpep_predict - Design mode - The base name "ARG" was added more than once by almeida85 » Thu, 2022-08-04 02:57 |
4 |
1,671 |
by almeida85 Thu, 2022-08-11 00:58 |
|
Urgent issue: Error with submitting a new Rosetta-Vienna RNP-ddG job by eyaaaan » Sun, 2022-08-07 22:03 |
0 |
882 |
by eyaaaan Tue, 2022-08-09 21:59 |
|
Nanobody design by chandana » Tue, 2022-08-09 20:36 |
0 |
1,198 |
by chandana Tue, 2022-08-09 20:36 |
|
How to choose designed antibody by Sunyp_IM » Wed, 2020-06-24 10:06 |
6 |
4,129 |
by chandana Tue, 2022-08-09 20:27 |
|
Unknown Element "SE" when generating NCAA params file containing selenium by liuwenxi » Thu, 2022-08-04 16:24 |
2 |
1,314 |
by liuwenxi Fri, 2022-08-05 09:50 |
|
Include MHC alpha helices in loop modelling protocol for pMHC complex by Roberto » Thu, 2022-08-04 07:22 |
0 |
830 |
by Roberto Thu, 2022-08-04 07:22 |
Log in to post new content in the forum.