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Rosetta 3 - Applications
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FAQ by admin » Mon, 2010-08-30 04:18 |
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by admin Fri, 2015-09-04 16:17 |
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how to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:40 |
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by mags33 Thu, 2019-09-19 07:03 |
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Can I use rosetta binaries built in one linux system to another linux system? by Danielsebas » Wed, 2019-09-18 06:49 |
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by rmoretti Wed, 2019-09-18 10:36 |
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how to make "static" built binaries use multiple cpus like "mpi"? by Danielsebas » Wed, 2019-09-18 06:41 |
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by rmoretti Wed, 2019-09-18 10:21 |
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"Make_fragments.pl" can't connect to dependencies links by Corvin » Wed, 2019-09-04 23:54 |
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by Corvin Wed, 2019-09-18 05:29 |
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Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease by bdzhh » Tue, 2019-09-17 17:02 |
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by bdzhh Tue, 2019-09-17 17:02 |
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Error with Formatdb of legacy blast when running "install_dependencies.pl"? by Danielsebas » Mon, 2019-09-16 09:30 |
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by Danielsebas Tue, 2019-09-17 01:03 |
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antibody modeling error by mxp » Mon, 2019-09-16 18:29 |
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by mxp Mon, 2019-09-16 18:29 |
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Structure prediction using true distance and angle constraint by maruhuang » Wed, 2019-08-21 02:29 |
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by smlewis Mon, 2019-09-16 14:10 |
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How to analyse multiple silent files from "Abinitiorelax" output to find best models? by Danielsebas » Tue, 2019-09-10 10:01 |
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by smlewis Mon, 2019-09-16 12:22 |
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"Install_dependencies.pl" gives "Aborted" when downloading "nr" database? by Danielsebas » Sat, 2019-09-14 08:53 |
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by danpf Mon, 2019-09-16 09:51 |
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How to make new VALL database? by Danielsebas » Sun, 2019-09-08 02:16 |
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by Danielsebas Wed, 2019-09-11 00:44 |
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Options "-out:prefix" didn't work by maruhuang » Tue, 2019-09-10 05:42 |
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by maruhuang Tue, 2019-09-10 20:03 |
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"make" error in "pdb2vall/structure_profile_scripts/DEPTH-CLONE-2.8.7" by Danielsebas » Mon, 2019-09-02 08:14 |
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by Danielsebas Sun, 2019-09-08 02:08 |
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extract docking pose from ligand docking silent file by Ruska322 » Sat, 2019-09-07 05:21 |
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by Ruska322 Sat, 2019-09-07 05:21 |
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Unable to understand fragment picking tutorial points. by Danielsebas » Thu, 2019-09-05 03:44 |
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by danpf Fri, 2019-09-06 11:29 |
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ligand docking with MPI by Ruska322 » Wed, 2019-09-04 03:47 |
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by Ruska322 Fri, 2019-09-06 07:13 |
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Rosetta make_fragments.pl error? by Danielsebas » Mon, 2019-09-02 07:51 |
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by Danielsebas Thu, 2019-09-05 03:35 |
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"sparks failed" error when running "make_fragments.pl"? by Danielsebas » Tue, 2019-09-03 03:43 |
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by Danielsebas Thu, 2019-09-05 03:09 |
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/database folder after running "install_dependencies.pl" size 657 GB? by Danielsebas » Tue, 2019-09-03 03:32 |
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by danpf Tue, 2019-09-03 10:15 |
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Rosetta fragment tools installation error by Danielsebas » Thu, 2019-08-29 02:17 |
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by Danielsebas Sun, 2019-09-01 02:38 |
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how to find help informations on rosetta_scripts in rosetta3.10 by xinmiaohe » Mon, 2019-08-26 14:48 |
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by xinmiaohe Tue, 2019-08-27 08:37 |
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A problem with "make_fragments.pl" script dependencies by Corvin » Fri, 2019-08-16 04:30 |
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by Corvin Tue, 2019-08-27 00:46 |
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can anyone help me correct this script to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:23 |
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by xinmiaohe Mon, 2019-08-26 18:16 |
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RosettaMatch by xingqing326 » Mon, 2019-07-22 13:14 |
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by rmoretti Mon, 2019-08-26 12:57 |
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"Angle constraint: 0-length bonds" error by purvi24 » Sun, 2019-07-28 10:09 |
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by rmoretti Mon, 2019-08-26 12:49 |
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PDB file name too long to be handled by file system by dave » Thu, 2019-08-08 03:10 |
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by rmoretti Mon, 2019-08-26 12:17 |
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Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively? by johnnytam100 » Fri, 2019-08-23 21:10 |
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by rmoretti Mon, 2019-08-26 12:03 |
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how to run ala_scan.xml by xinmiaohe » Mon, 2019-08-26 09:38 |
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by xinmiaohe Mon, 2019-08-26 09:38 |
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ProteinInterfaceDesign algorithm questions by tsztain » Mon, 2019-02-18 14:10 |
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by rmoretti Sun, 2019-08-25 19:15 |
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Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo by zharmad » Fri, 2019-08-23 01:16 |
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by everyday847 Fri, 2019-08-23 04:08 |
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antibody protocol fails by hamedkhakzad » Mon, 2019-08-19 07:43 |
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by smlewis Wed, 2019-08-21 15:21 |
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debug rosetta_scripts FunFolDes run by tatsiana.bylund » Sun, 2019-08-18 23:17 |
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by tatsiana.bylund Sun, 2019-08-18 23:17 |
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RNP structure prediction flags by daniloboskovic » Fri, 2019-08-16 11:10 |
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by daniloboskovic Fri, 2019-08-16 11:17 |
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How does the label in pdb files looks like when using ResiduePDBInfoHasLabel? by johnnytam100 » Fri, 2019-08-16 00:25 |
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by JackMaguire Fri, 2019-08-16 07:41 |
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Does it make sense if I do backrub after sequence design? by johnnytam100 » Thu, 2019-08-15 05:15 |
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by johnnytam100 Fri, 2019-08-16 00:20 |
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new BUNS for FunFolDes run by tatsiana.bylund » Wed, 2019-08-14 20:57 |
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by tatsiana.bylund Wed, 2019-08-14 20:57 |
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InterfaceAnalyzer：“too many tries in fill_missing_atoms!” by mxp » Tue, 2019-08-06 00:41 |
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by mxp Mon, 2019-08-12 18:42 |
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RosettaScripts LinkResidues by Yero » Fri, 2019-05-17 05:26 |
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by Yero Thu, 2019-07-18 01:39 |
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Usage of the TaskOperations "RestrictToCDRsAndNeighbors" by johnnytam100 » Wed, 2019-04-10 02:58 |
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by rmoretti Wed, 2019-07-10 10:10 |
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is it necessary to always run relax before any Rosetta by mainzer » Fri, 2019-04-12 01:35 |
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by rmoretti Wed, 2019-07-10 09:47 |
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protein interction design by Negarsardar » Wed, 2019-05-15 12:01 |
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by rmoretti Wed, 2019-07-10 09:24 |
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Mutating phosphorylated residues to "canonical" residues and vice versa by ValentinaSora » Mon, 2019-05-20 05:58 |
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by rmoretti Wed, 2019-07-10 09:22 |
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Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking by Corvin » Wed, 2019-06-19 08:40 |
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by rmoretti Tue, 2019-07-09 10:13 |
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De novo structure building with medium resolution map by BuddySphinx » Tue, 2019-07-02 09:07 |
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by BuddySphinx Tue, 2019-07-02 12:03 |
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kcenters_clustering_of_fragments by bjharris » Mon, 2019-07-01 16:16 |
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by bjharris Mon, 2019-07-01 16:16 |
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Rosetta_cm Segmentation Fault by gszwabowski » Thu, 2019-06-20 12:55 |
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by gszwabowski Wed, 2019-06-26 10:25 |
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Question about fastsaxs and saxs_score by orionshih » Thu, 2019-06-13 02:30 |
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by orionshih Wed, 2019-06-26 03:54 |
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Relax with multiple small molecules by jharamesh » Sun, 2019-05-26 19:34 |
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by rmoretti Mon, 2019-06-24 15:19 |
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The relax qustion of Rosetta VIP by asbelx » Mon, 2019-06-10 07:52 |
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by rmoretti Mon, 2019-06-24 14:42 |
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Membrane ab-initio modelling of a beta-strand by hzhekova » Mon, 2019-06-10 14:22 |
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by rmoretti Mon, 2019-06-24 14:39 |
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Enzyme Design FlexBB Protocol Bug: DNA/RNA handling by kettner » Fri, 2019-06-14 14:16 |
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by rmoretti Mon, 2019-06-24 13:46 |
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Rosetta_cm Partial Threading Removing Parts of Sequence by gszwabowski » Thu, 2019-06-20 12:30 |
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by rmoretti Mon, 2019-06-24 13:43 |
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VH-VL Orientation in antibody by sujigeorge1979 » Mon, 2019-06-17 01:23 |
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by jeliazkov Mon, 2019-06-17 06:03 |
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AddHelixSequenceConstraints Mover2 by Negarsardar » Sat, 2019-06-01 01:54 |
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by vmulligan Thu, 2019-06-13 15:01 |
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AddHelixSequenceConstraints Mover by Negarsardar » Thu, 2019-05-30 03:17 |
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by vmulligan Thu, 2019-06-13 14:59 |
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RosettaAntibody core.pose.util error by rishibedi » Fri, 2018-10-05 01:31 |
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by esozdemir Thu, 2019-06-13 12:19 |
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Write error during saving of PDB-file after working with it in the Rosetta through Unix terminal by Corvin » Thu, 2019-04-25 01:20 |
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by Corvin Wed, 2019-06-12 00:04 |
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How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior ) by asbelx » Sat, 2019-06-08 00:07 |
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by asbelx Sat, 2019-06-08 17:03 |
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SEWING and motif file generation by rbjacob » Thu, 2018-07-12 07:28 |
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1,138 |
by zhangying1990 Tue, 2019-06-04 18:04 |
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Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB by rlwoltz » Thu, 2019-01-24 19:43 |
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by karenjgonzalez Fri, 2019-05-31 07:18 |
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protein interface design by Negarsardar » Tue, 2019-05-28 07:04 |
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by Negarsardar Thu, 2019-05-30 23:46 |
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Sampling a wider range of RMSD of poses by Rosetta Dock by johnnytam100 » Tue, 2019-05-21 22:28 |
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by johnnytam100 Thu, 2019-05-23 20:52 |
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Choosing weight file for interface design? by johnnytam100 » Tue, 2019-05-07 00:47 |
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by johnnytam100 Tue, 2019-05-21 22:33 |
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Behavior of nstruct by johnnytam100 » Wed, 2019-05-15 22:22 |
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by johnnytam100 Tue, 2019-05-21 20:48 |
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protein protein interaction design by Negarsardar » Wed, 2019-05-15 06:13 |
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by ajasja Wed, 2019-05-15 15:40 |
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loop design for Conformational bias by dhirajks » Thu, 2019-05-09 21:22 |
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by jadolfbr Fri, 2019-05-10 07:53 |
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Protein Protein Docking with Constraints by ajaniharesh » Wed, 2019-04-10 07:26 |
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by rmoretti Thu, 2019-05-09 15:40 |
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missing atom number 5 atom name CB by ajaniharesh » Fri, 2019-04-26 12:08 |
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by rmoretti Fri, 2019-04-26 12:13 |
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Coverage of sequence space? by johnnytam100 » Sun, 2019-04-21 23:25 |
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by johnnytam100 Thu, 2019-04-25 19:28 |
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Highly negative total score by Ruchi_P_Jain » Wed, 2019-04-24 19:55 |
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by nannemdp Thu, 2019-04-25 07:58 |
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input file for loop modeling by Negarsardar » Tue, 2019-04-16 10:21 |
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by rmoretti Tue, 2019-04-16 11:07 |
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How to specify only design surface residues and loops by RosettaScripts? by johnnytam100 » Sun, 2019-04-07 21:47 |
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by johnnytam100 Wed, 2019-04-10 02:48 |
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ERROR: Specified chain does not exist. by ajaniharesh » Fri, 2019-04-05 11:14 |
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by ajaniharesh Tue, 2019-04-09 06:53 |
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Abinitio the Broker protocol by ac.research » Sun, 2019-03-24 03:56 |
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by rmoretti Fri, 2019-04-05 00:18 |
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Segmentation Fault by ajaniharesh » Fri, 2019-03-29 11:21 |
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by ajaniharesh Thu, 2019-04-04 07:07 |
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Threading a sequence onto a template with ligands/metal ions included by ajkal » Wed, 2017-04-19 11:53 |
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1,166 |
by ahmadkhalifa Sun, 2019-03-31 23:27 |
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Threading with Ligand by ekwan » Thu, 2018-12-06 15:10 |
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by rmoretti Fri, 2019-03-29 13:21 |
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reporting bugs? (erraser in rosetta 3.10) by meyer » Fri, 2018-12-14 09:40 |
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by everyday847 Fri, 2019-03-29 13:13 |
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Missing atoms and cannot find atom pose when refining ligand position with EM density by BuddySphinx » Mon, 2018-12-31 16:22 |
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by rmoretti Fri, 2019-03-29 13:06 |
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Unexpected Error with RosettaCM - by terry » Fri, 2019-02-22 14:26 |
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by rmoretti Fri, 2019-03-29 12:25 |
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Docking to TM protein plus lipid bilayer by renedominik » Tue, 2019-03-12 06:58 |
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by rmoretti Fri, 2019-03-29 10:11 |
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Two questions on the RosettaScripts flexbb-interfacedesign.xml by johnnytam100 » Fri, 2019-03-15 04:54 |
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by rmoretti Fri, 2019-03-29 09:58 |
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hybrid approach - comparative and ab initio modelling by eprates » Wed, 2019-03-20 11:58 |
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by rmoretti Fri, 2019-03-29 09:45 |
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Specifying resfile in rosetta scripts by johnnytam100 » Mon, 2019-03-18 02:19 |
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by rmoretti Fri, 2019-03-29 09:30 |
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help surface_docking peptide on ice by engand93 » Wed, 2019-03-27 02:43 |
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by engand93 Wed, 2019-03-27 02:43 |
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De novo water predictions using SPaDES by MNP1986 » Mon, 2019-03-25 07:53 |
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by MNP1986 Mon, 2019-03-25 07:53 |
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Adding bridged water interaction in constraint file by purvi24 » Thu, 2019-02-28 07:01 |
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by purvi24 Mon, 2019-03-11 06:43 |
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Any backrub expert? by johnnytam100 » Fri, 2019-03-01 01:58 |
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by johnnytam100 Sun, 2019-03-03 23:42 |
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How to correctly incorporate constraint information into ab initio structure prediction? by johnnytam100 » Tue, 2019-02-19 03:13 |
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by johnnytam100 Fri, 2019-03-01 01:36 |
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Chemically bound ligand connection error by tsztain » Tue, 2019-01-01 18:40 |
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by tsztain Mon, 2019-02-18 09:55 |
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RosettaMP: issue with generating .lips4 file by ksy141 » Mon, 2019-01-21 17:17 |
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by ksy141 Mon, 2019-01-21 17:21 |
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Model monomer to fit cryo density map of a filament by BuddySphinx » Wed, 2018-12-12 18:58 |
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by BuddySphinx Sun, 2018-12-30 16:49 |
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rosetta remodel and designing helix extension by dhirajks » Thu, 2018-12-13 19:34 |
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by dhirajks Thu, 2018-12-13 19:34 |
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Model truncated proteins by BuddySphinx » Wed, 2018-12-12 10:32 |
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by smlewis Wed, 2018-12-12 16:51 |
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molfile to params polymer python errors by tsztain » Sun, 2018-12-02 15:38 |
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by tsztain Tue, 2018-12-11 13:41 |
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ddG calculations to study point mutations by N.Chopra » Fri, 2018-12-07 12:36 |
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by jeliazkov Fri, 2018-12-07 12:51 |
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Weighted scores?? by sizhang » Wed, 2018-12-05 15:22 |
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by sizhang Wed, 2018-12-05 15:22 |
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docking parse error by dave » Tue, 2018-12-04 08:41 |
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by rmoretti Tue, 2018-12-04 08:55 |
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SnugDock - What protocol should I use? by dfcoelho » Tue, 2018-11-27 07:32 |
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by dfcoelho Wed, 2018-11-28 08:07 |
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