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Rosetta 3 - Applications
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FAQ by admin » Mon, 2010-08-30 04:18 |
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by admin Fri, 2015-09-04 16:17 |
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Python2 script in Rosetta3.13 by ddhoyo » Wed, 2021-09-15 04:05 |
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by matteoferla Wed, 2021-09-15 06:04 |
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Missing atoms and cannot find atom pose when refining ligand position with EM density by BuddySphinx » Mon, 2018-12-31 16:22 |
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1,575 |
by e3lm Tue, 2021-09-14 10:02 |
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ERROR: Unable to fill in missing atoms. by mieczyslaw » Tue, 2020-10-20 09:43 |
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1,561 |
by soumyo88 Thu, 2021-08-26 14:25 |
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Rosetta Ligand Ensemble by malfonsoprieto » Wed, 2021-05-26 10:21 |
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356 |
by vizcarra Thu, 2021-08-26 10:16 |
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duplex RNA by amir_tagh » Thu, 2021-08-05 06:34 |
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159 |
by everyday847 Mon, 2021-08-16 10:43 |
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Topobuilder segmentation fault by tatsiana.bylund » Mon, 2021-08-09 07:10 |
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139 |
by tatsiana.bylund Mon, 2021-08-09 07:10 |
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clashes created with enzdes by listofdina » Mon, 2021-08-02 06:51 |
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127 |
by listofdina Mon, 2021-08-02 06:51 |
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Stepwise Monte Carlo - errors with ResidueTypeSet and Disulfides by user42 » Wed, 2021-07-21 20:34 |
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153 |
by everyday847 Fri, 2021-07-30 13:26 |
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FlexPepDock bug? Constraints do not appear in total_score? by nrollins » Mon, 2021-07-26 14:29 |
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by nrollins Mon, 2021-07-26 14:29 |
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FlexPepDock ab initio: behavior without fragment files by nrollins » Mon, 2021-07-26 14:16 |
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by nrollins Mon, 2021-07-26 14:16 |
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Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring by brspurri » Wed, 2017-03-29 13:19 |
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3,157 |
by matteoferla Mon, 2021-07-19 06:13 |
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rosetta_cm segfault by browns02 » Fri, 2021-07-09 13:35 |
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149 |
by rmoretti Fri, 2021-07-09 15:05 |
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D-amino acids tripeptide docking. by sam_dc » Sat, 2021-07-03 08:48 |
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181 |
by vmulligan Tue, 2021-07-06 08:27 |
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Repacker vs minimization by Elijah_Hix » Fri, 2021-07-02 07:25 |
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by Elijah_Hix Fri, 2021-07-02 07:25 |
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How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior ) by asbelx » Sat, 2019-06-08 00:07 |
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1,155 |
by happycaapi Tue, 2021-06-29 15:35 |
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setup_RosettaCM.py by browns02 » Mon, 2021-06-28 07:13 |
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by browns02 Tue, 2021-06-29 11:41 |
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How to Perform point mutations with NCAA by Subhrodeep Saha » Tue, 2021-06-22 02:05 |
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by vmulligan Thu, 2021-06-24 13:23 |
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NCAA attached at two points by tsztain » Wed, 2021-06-16 15:20 |
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by matteoferla Sat, 2021-06-19 03:07 |
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different value of score from rna_denovo and rna_score? by yikanzhang » Wed, 2021-02-03 07:17 |
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243 |
by CameronJA Tue, 2021-06-15 20:02 |
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Fastsaxs by Pernille » Mon, 2013-07-22 07:29 |
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32,654 |
by rmoretti Mon, 2021-06-14 12:56 |
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Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:30 |
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by taylorjones Wed, 2021-06-09 16:38 |
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FastRelax Refinement severe clashes by Victor Tobiasson » Thu, 2021-05-20 06:55 |
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by Victor Tobiasson Thu, 2021-05-20 06:55 |
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residue_energy_breakdown of a protein-ligand complex. by sam_dc » Tue, 2021-05-18 04:45 |
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by rmoretti Tue, 2021-05-18 07:21 |
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Issues with modifying dock.xml for multiple ligand docking by DGR95 » Fri, 2021-05-14 12:51 |
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by DGR95 Fri, 2021-05-14 12:51 |
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Disulfide Bonds in Loop Modeling by code_Monkey » Mon, 2021-05-03 08:27 |
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by code_Monkey Thu, 2021-05-06 07:14 |
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trRosetta protocol Segmentation Fault by nc-ring » Wed, 2021-04-28 11:57 |
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by nc-ring Tue, 2021-05-04 12:26 |
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Thread target sequence by duz » Thu, 2021-04-01 10:09 |
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by duz Mon, 2021-05-03 07:50 |
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Score Functions for Ligand-protein Docking by ziruiw » Sun, 2021-04-25 13:41 |
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by ziruiw Fri, 2021-04-30 12:01 |
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Help with enzyme design files by Wenithor » Thu, 2021-04-29 10:33 |
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by rmoretti Thu, 2021-04-29 10:44 |
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hpatch commands and how to identify patches by Bianca Oliva » Thu, 2021-04-29 04:02 |
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by Bianca Oliva Thu, 2021-04-29 04:02 |
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ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator> by DGR95 » Fri, 2021-04-16 19:26 |
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by DGR95 Wed, 2021-04-28 16:13 |
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RosettaCM/hybridize by kywei » Wed, 2021-04-28 09:56 |
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by vmulligan Wed, 2021-04-28 12:59 |
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Generalized KIC loop closure affects downstream residues without perturbations by chenna » Mon, 2021-04-26 02:16 |
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by chenna Wed, 2021-04-28 07:18 |
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Filling the missing loops by code_Monkey » Tue, 2021-04-27 07:44 |
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by code_Monkey Tue, 2021-04-27 12:11 |
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Element 'trRosettaProtocol': This element is not expected. by csaylan » Tue, 2021-04-20 14:21 |
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by csaylan Tue, 2021-04-20 16:13 |
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Docking Analysis and Metrics in RosettaLigand. by sam_dc » Tue, 2021-04-20 03:54 |
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by rmoretti Tue, 2021-04-20 13:27 |
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multi ligand docking using rosetta script by syntekabio2019 » Tue, 2021-04-13 19:31 |
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by syntekabio2019 Tue, 2021-04-13 19:31 |
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r_frag_quality by ii_cnr » Mon, 2021-04-12 03:06 |
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by ii_cnr Mon, 2021-04-12 23:44 |
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GeneralizedKIC loop closure error by chenna » Sat, 2021-04-10 00:21 |
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by chenna Mon, 2021-04-12 22:08 |
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What is an SS0 predictor? by ojmel » Fri, 2021-04-02 14:25 |
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by ojmel Mon, 2021-04-12 07:50 |
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RosettaLigand ERROR: Error in core::conformation::check_good_cutpoint_neighbour() by sam_dc » Thu, 2021-03-25 09:32 |
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by sam_dc Mon, 2021-04-12 07:24 |
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issues about cstfile in RosettaMatch by Nicole Deng » Fri, 2020-12-18 05:44 |
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by He Xiao Sun, 2021-04-11 19:29 |
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Patch to impose tetrahedral geometry on backbone O atom by georg » Thu, 2021-04-08 09:30 |
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by georg Thu, 2021-04-08 09:31 |
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Loop modeling with constraints by agctomer » Sat, 2021-03-20 03:53 |
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by agctomer Thu, 2021-04-08 07:37 |
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PDB Clustering by code_Monkey » Mon, 2021-04-05 10:40 |
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by code_Monkey Mon, 2021-04-05 10:40 |
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How to use base_pair_constraint for RNA as a constraint term？ by yels » Sat, 2021-04-03 01:19 |
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by everyday847 Sun, 2021-04-04 12:48 |
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Can rosetta generate a centroid model based on the rna sequence? by yels » Fri, 2021-03-26 04:06 |
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by yels Wed, 2021-03-31 18:31 |
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Protein Ensemble RosettaLigand Docking by sam_dc » Fri, 2021-03-26 10:18 |
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by sam_dc Fri, 2021-03-26 12:04 |
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Should I be stripping water molecules from my input structure for Rosetta Design? by chrisHKL » Wed, 2021-03-24 14:22 |
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by smlewis Wed, 2021-03-24 14:59 |
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Can't generate a cst file to use with ddg_monomer application by ctqwong » Sat, 2021-03-13 03:53 |
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by ctqwong Thu, 2021-03-18 02:04 |
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Ab Initio folding with HEM ligand molecule by jseco » Fri, 2021-03-05 06:49 |
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by jseco Mon, 2021-03-08 03:40 |
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Comparative Modeling Tutorial by code_Monkey » Thu, 2021-03-04 12:35 |
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by rmoretti Fri, 2021-03-05 09:35 |
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Error from clean_pdb.py by code_Monkey » Mon, 2021-03-01 17:00 |
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by code_Monkey Thu, 2021-03-04 12:14 |
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BuildPeptide - Using Phosphorylated and Sulfated Tyrosine by jlawrie » Thu, 2020-09-03 14:29 |
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by cryosky Mon, 2021-03-01 21:37 |
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How to write down a connection between ligand's atom and metal ion from enzyme? by Corvin » Mon, 2021-02-15 06:54 |
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by aloshbau Mon, 2021-03-01 20:06 |
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antibody H3 modelling protocol for nanobody gives "[ ERROR ] Inaccurate G!" messages by AlfredoKCL » Sun, 2021-02-28 16:42 |
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by AlfredoKCL Mon, 2021-03-01 04:07 |
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CoupledMoves not altering backbone coordinates? by amorin » Wed, 2021-01-20 11:38 |
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1,711 |
by amorin Sat, 2021-02-27 20:29 |
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Number of max allowed mutations from WT sequence by mouung » Fri, 2020-09-04 02:33 |
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by amorin Fri, 2021-02-12 08:53 |
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Segfault with Pepspec by almeida85 » Thu, 2021-02-11 02:56 |
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by almeida85 Thu, 2021-02-11 02:56 |
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core.optimization.LineMinimizer: [ ERROR ] Inaccurate G! by aralz » Thu, 2021-02-11 00:46 |
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by aralz Thu, 2021-02-11 00:46 |
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hbond_sr_bb and hbond_lr_bb for different chains by tylerborrman » Tue, 2020-10-13 13:41 |
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by tylerborrman Tue, 2021-02-09 16:33 |
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Rosetta antibody- modeling in the presense of an antigen by agctomer » Mon, 2021-02-01 03:19 |
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by nannemdp Wed, 2021-02-03 08:52 |
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antibody.linuxgccrelease- output models don't have the same sequence as the input fasta by agctomer » Thu, 2021-01-21 15:35 |
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by agctomer Sun, 2021-01-31 01:06 |
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Modelling humanized camelid like antibody by terabithia2011 » Tue, 2021-01-26 10:12 |
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by terabithia2011 Tue, 2021-01-26 10:12 |
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Creating fragment files for proteins less than 27 aa in length by Poladu » Tue, 2021-01-26 07:50 |
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by Poladu Tue, 2021-01-26 07:50 |
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Question with rosetta AbPredict tutorial by terabithia2011 » Mon, 2021-01-25 09:24 |
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by terabithia2011 Mon, 2021-01-25 09:24 |
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[Solved] Resetting a pose with RigidBodyTransMover by bjharris » Wed, 2021-01-13 14:01 |
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by bjharris Fri, 2021-01-22 17:34 |
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manually defining CDRs in antibody modelling by gard.nelson » Fri, 2020-07-10 13:31 |
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by brspurri Wed, 2021-01-20 08:11 |
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RosettaAntibody - No matching templates for CDR1 by agctomer » Tue, 2021-01-19 22:45 |
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by agctomer Tue, 2021-01-19 22:45 |
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[Solved] RosettaAntibody3 - Grafting step is failing to detect H3 from the input sequence by brspurri » Mon, 2021-01-04 16:46 |
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by brspurri Mon, 2021-01-18 18:14 |
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A problem with "molfile_to_params.py" by Rosettasz » Mon, 2013-08-19 19:35 |
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7,745 |
by egecav Mon, 2021-01-18 05:41 |
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relax.linuxgccrelease in multiple processors by jpfuenzalidawx » Thu, 2021-01-14 14:07 |
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by jadolfbr Fri, 2021-01-15 08:06 |
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Writing down properties for new atom types by Corvin » Tue, 2021-01-12 04:30 |
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by Corvin Wed, 2021-01-13 04:00 |
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constraints in Rosetta ligand docking (AddorRemoveMatchCsts, Addconstraints Mover, and ConstraintSetMover) by rohi » Mon, 2021-01-11 13:32 |
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by rohi Mon, 2021-01-11 13:58 |
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Design of multimeric protein by ldlamini » Mon, 2021-01-11 07:23 |
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by ldlamini Mon, 2021-01-11 07:23 |
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Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)? by Corvin » Wed, 2020-12-16 04:58 |
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by Corvin Wed, 2020-12-30 09:21 |
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RemodelMover and Input Pose by ozyo » Tue, 2020-12-29 09:41 |
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by ozyo Tue, 2020-12-29 09:41 |
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protein-ligand docking rescoring with interfaceAnalyzer by syntekabio2019 » Sat, 2020-12-19 03:59 |
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462 |
by syntekabio2019 Sun, 2020-12-20 21:10 |
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flexpepdcok of lipid conjugated peptide with glyco protein. by ravi.thakkkar369 » Fri, 2020-12-18 13:00 |
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239 |
by ravi.thakkkar369 Fri, 2020-12-18 13:00 |
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where is generate_ligens.linuxgccrelease? by Nicole Deng » Thu, 2020-12-03 00:00 |
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529 |
by Nicole Deng Fri, 2020-12-18 00:28 |
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pepspec anchor dock by Astghik » Tue, 2020-10-20 05:31 |
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1,124 |
by Pappmaschee Thu, 2020-12-17 02:24 |
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Error when using Remodel on a protein with a chemically bound ligand by Pappmaschee » Wed, 2020-12-16 09:23 |
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303 |
by Pappmaschee Wed, 2020-12-16 09:23 |
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RosettaScripts filter BuriedUnsatHbonds2 missing still by zdaw » Fri, 2020-12-11 12:39 |
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581 |
by zdaw Tue, 2020-12-15 15:38 |
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RNA modeling with step wise Monte Carlo error by szcshr123 » Mon, 2020-12-07 18:08 |
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by everyday847 Wed, 2020-12-09 21:46 |
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Can I believe the antibody design result? by Sunyp_IM » Mon, 2020-11-30 03:29 |
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1,059 |
by jadolfbr Sun, 2020-12-06 17:41 |
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Error: in membrane docking : Cannot split pose by membrane jump! Quitting... by Astghik » Tue, 2020-11-24 05:27 |
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522 |
by Astghik Thu, 2020-12-03 02:35 |
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Undesirable behaviour of PoseFromSFRBuilder regarding Hydrogen atoms by Corvin » Wed, 2020-12-02 04:00 |
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365 |
by rmoretti Wed, 2020-12-02 07:27 |
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polymer docking using rosetta scripts by syntekabio2019 » Fri, 2020-11-27 01:51 |
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358 |
by rmoretti Fri, 2020-11-27 10:47 |
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Prevention of the negatively charged Nitrogen protonation by coupled_moves by Corvin » Wed, 2020-11-18 02:56 |
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791 |
by Corvin Wed, 2020-11-25 02:58 |
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RosettaMP: issue with generating .lips4 file by ksy141 » Mon, 2019-01-21 17:17 |
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1,588 |
by noahC_noahDo Fri, 2020-11-20 11:29 |
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How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure? by Sunyp_IM » Sun, 2020-11-08 08:07 |
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1,029 |
by Brahm Yachnin Wed, 2020-11-18 17:21 |
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debug rosetta_scripts FunFolDes run by tatsiana.bylund » Sun, 2019-08-18 23:17 |
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717 |
by neelamraju.srid... Wed, 2020-11-18 05:47 |
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Membrane Abinitio modeling error by jkyan007 » Thu, 2020-10-29 03:30 |
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426 |
by noahC_noahDo Tue, 2020-11-17 10:35 |
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Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease after blueprint file reading by Corvin » Tue, 2020-06-30 00:36 |
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3,161 |
by Corvin Tue, 2020-11-10 01:22 |
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Using Rmsd RosettaScripts filter with alignment files by bjharris » Sun, 2020-11-08 15:51 |
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362 |
by rmoretti Sun, 2020-11-08 18:56 |
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core.pose.util: [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard by AlfredoKCL » Sat, 2020-11-07 18:21 |
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442 |
by AlfredoKCL Sat, 2020-11-07 18:21 |
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How to add additional rounds of design and optimization in Rosetta scripts? by Nicole Deng » Tue, 2020-11-03 19:05 |
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536 |
by Nicole Deng Thu, 2020-11-05 03:04 |
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Speed problem when running RosettaLigand ligand docking by Nicole Deng » Tue, 2019-10-08 04:29 |
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1,169 |
by Nicole Deng Tue, 2020-11-03 19:07 |
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antibody.mpi.linuxgccrelease some antibodies failing to model by drewaight » Mon, 2020-11-02 17:07 |
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397 |
by drewaight Mon, 2020-11-02 17:07 |
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