You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
| Topic / Topic starter | Replies | Views |
Last post |
|
|---|---|---|---|---|
|
Sticky:
FAQ by admin » Mon, 2010-08-30 04:18 |
0 |
16,786 |
by admin Fri, 2015-09-04 16:17 |
|
|
Protein Protein Docking with Linker by mrinal » Mon, 2023-03-20 15:58 |
0 |
358 |
by mrinal Mon, 2023-03-20 15:58 |
|
|
core.pose.util: (0) {0} [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard by ldx022 » Thu, 2023-03-16 04:13 |
0 |
745 |
by ldx022 Thu, 2023-03-16 04:13 |
|
|
Lots of Prepacking Jobs for Snugdock Failing by katherinemccoy » Tue, 2023-02-28 18:17 |
0 |
1,949 |
by katherinemccoy Mon, 2023-03-13 19:10 |
|
|
Multistate design issues with -run:msd_job_dist option and MSDMover by elaine.thai » Wed, 2020-05-13 18:07 |
1 |
2,376 |
by tangzi Mon, 2023-03-06 09:50 |
|
|
ReplicaDock 2.0 Native vs Input Structure Flags Confusion by katherinemccoy » Tue, 2022-12-27 06:42 |
2 |
3,938 |
by katherinemccoy Tue, 2023-02-28 18:19 |
|
|
how to control alignment for energy_based_clustering by xfradera » Tue, 2023-02-28 10:13 |
0 |
1,527 |
by xfradera Tue, 2023-02-28 10:13 |
|
|
ligand_docking by yang » Thu, 2023-02-16 04:37 |
2 |
1,753 |
by yang Wed, 2023-02-22 19:18 |
|
|
St13runtime_error in Rosetta ligand docking by syntekabio2019 » Thu, 2023-02-09 18:18 |
2 |
2,249 |
by syntekabio2019 Sun, 2023-02-19 18:39 |
|
|
How to change the axes of "-spin" in docking_protocol by Zehui Zhou » Mon, 2023-02-13 22:06 |
0 |
1,594 |
by Zehui Zhou Mon, 2023-02-13 22:06 |
|
|
Comparing a prediction to the native structure and calculate RMSD for RNA by danwolf_33 » Thu, 2023-02-09 09:32 |
0 |
1,509 |
by danwolf_33 Thu, 2023-02-09 09:34 |
|
|
relax protein with multi-conformer bound ligand by xfradera » Thu, 2023-01-12 09:10 |
4 |
2,459 |
by rmoretti Mon, 2023-02-06 15:06 |
|
|
prepack - residue count fails by xfradera » Fri, 2023-01-27 06:36 |
0 |
733 |
by xfradera Fri, 2023-01-27 06:36 |
|
|
Different scoring applications (score vs score_aln vs score_jd2, etc.)? by cossio » Fri, 2014-12-26 07:19 |
3 |
3,944 |
by Patrícia Antunes Fri, 2023-01-20 11:55 |
|
|
snugdock(sequence position requested was greater than the number of residues in the pose) by lei » Thu, 2023-01-12 01:40 |
5 |
1,433 |
by lei Fri, 2023-01-20 08:11 |
|
|
Grafting using antibody.mpi.linuxgccrelease and specifying custom template which doesnt have pdb id. by SubhaK » Wed, 2023-01-18 23:33 |
0 |
608 |
by SubhaK Wed, 2023-01-18 23:33 |
|
|
Snugdock Error: The sequence position requested was greater than the number of residues by stannowitz » Tue, 2023-01-17 07:37 |
0 |
708 |
by stannowitz Tue, 2023-01-17 23:48 |
|
|
RosettaCM Ignoring Ligand by Delfosse57 » Sun, 2022-12-04 12:05 |
0 |
3,612 |
by Delfosse57 Sun, 2022-12-04 12:05 |
|
|
Unable to locate the "compute_ddg.py" file and running the RosettaMP protocol by Sajjad » Mon, 2022-11-28 14:09 |
3 |
4,068 |
by Sajjad Wed, 2022-11-30 11:50 |
|
|
unable to generate the span file with "mp_span_from_pdb.default.linuxgccrelease" from a PDB file by Sajjad » Wed, 2022-11-30 11:40 |
0 |
3,479 |
by Sajjad Wed, 2022-11-30 11:40 |
|
|
The confussion about an example in tutorial in Rosetta Virtual Workshop 2020 by ldx022 » Tue, 2022-11-29 04:58 |
3 |
3,597 |
by ldx022 Tue, 2022-11-29 08:38 |
|
|
Score.sc file showing total score 0 for all protein structures created by aanshi » Wed, 2022-11-23 11:13 |
1 |
2,900 |
by nannemdp Mon, 2022-11-28 09:39 |
|
|
Help to understand docking results by rtorquato » Fri, 2022-11-25 12:05 |
0 |
1,127 |
by rtorquato Fri, 2022-11-25 12:05 |
|
|
snugdock: constrained backbone by mahendra » Mon, 2022-11-14 02:51 |
0 |
1,375 |
by mahendra Mon, 2022-11-14 02:51 |
|
|
Ligand Rotamer Control in Macther by Hirbond » Tue, 2022-10-25 13:01 |
0 |
1,440 |
by Hirbond Wed, 2022-10-26 12:57 |
|
|
Setting pivots points for GenKIC by almeida85 » Tue, 2022-10-25 02:32 |
0 |
1,333 |
by almeida85 Tue, 2022-10-25 02:32 |
|
|
Small molecule dimer/trimer/etc docking by lukasz » Tue, 2022-10-04 06:49 |
1 |
1,203 |
by rmoretti Tue, 2022-10-04 07:57 |
|
|
Symmetry definition question by mrconde96 » Sun, 2022-10-02 05:34 |
0 |
982 |
by mrconde96 Sun, 2022-10-02 05:34 |
|
|
Old Knotfind algorithm by Martin Floor » Thu, 2022-09-22 07:28 |
1 |
590 |
by rmoretti Fri, 2022-09-23 09:38 |
|
|
ReplicaDock2.0 demo fails with MPIFileBufJobDistributor: (1) [ ERROR ] by erpannec » Tue, 2022-08-09 05:42 |
4 |
787 |
by erpannec Thu, 2022-09-15 05:17 |
|
|
Prepacking a macrocycle for docking / preserving cyclization by almeida85 » Thu, 2022-09-08 06:54 |
0 |
409 |
by almeida85 Thu, 2022-09-08 06:54 |
|
|
Trehalose by jpfuenzalidawx » Thu, 2022-09-08 00:49 |
0 |
361 |
by jpfuenzalidawx Thu, 2022-09-08 00:49 |
|
|
Macrocycle from a C-terminal amidated peptide by almeida85 » Thu, 2022-08-18 07:53 |
0 |
465 |
by almeida85 Thu, 2022-08-18 07:53 |
|
|
Docking HeparinSulfate to proteins using GlycanDock by GebauerJ » Tue, 2022-08-16 07:44 |
0 |
420 |
by GebauerJ Tue, 2022-08-16 07:44 |
|
|
RIFdocking：Unable to locate database file chemical/residue_type_sets/fa_standard/residue_types/ by sia » Tue, 2022-08-02 20:06 |
2 |
677 |
by SeongRyeong Go Mon, 2022-08-15 18:31 |
|
|
simple_cycpep_predict - Design mode - The base name "ARG" was added more than once by almeida85 » Thu, 2022-08-04 02:57 |
4 |
744 |
by almeida85 Thu, 2022-08-11 00:58 |
|
|
Urgent issue: Error with submitting a new Rosetta-Vienna RNP-ddG job by eyaaaan » Sun, 2022-08-07 22:03 |
0 |
456 |
by eyaaaan Tue, 2022-08-09 21:59 |
|
|
Nanobody design by chandana » Tue, 2022-08-09 20:36 |
0 |
490 |
by chandana Tue, 2022-08-09 20:36 |
|
|
How to choose designed antibody by Sunyp_IM » Wed, 2020-06-24 10:06 |
6 |
2,861 |
by chandana Tue, 2022-08-09 20:27 |
|
|
Unknown Element "SE" when generating NCAA params file containing selenium by liuwenxi » Thu, 2022-08-04 16:24 |
2 |
594 |
by liuwenxi Fri, 2022-08-05 09:50 |
|
|
Include MHC alpha helices in loop modelling protocol for pMHC complex by Roberto » Thu, 2022-08-04 07:22 |
0 |
427 |
by Roberto Thu, 2022-08-04 07:22 |
|
|
pMHC modelling by Roberto » Thu, 2022-08-04 07:11 |
0 |
415 |
by Roberto Thu, 2022-08-04 07:11 |
|
|
CS-Rosetta cofactor by martongadanecz » Wed, 2022-08-03 01:05 |
0 |
424 |
by martongadanecz Wed, 2022-08-03 01:05 |
|
|
errors about RIFdocking by sia » Sun, 2022-07-24 20:45 |
6 |
1,040 |
by sia Tue, 2022-08-02 20:08 |
|
|
Benchmarking Rosetta DDG Methods by sareeves96 » Fri, 2022-07-29 09:55 |
0 |
444 |
by sareeves96 Fri, 2022-07-29 09:55 |
|
|
ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42 by yliang20 » Wed, 2022-06-15 22:22 |
1 |
609 |
by adriancmf25 Thu, 2022-07-28 02:09 |
|
|
Expected density by GabrielDucrocq » Thu, 2022-07-14 06:38 |
1 |
540 |
by matteoferla Wed, 2022-07-20 10:50 |
|
|
shape complementarity by holdenj » Fri, 2022-07-15 13:24 |
1 |
493 |
by rmoretti Fri, 2022-07-15 13:50 |
|
|
Error with RNA_denovo by zmfowler » Thu, 2022-07-14 05:34 |
0 |
432 |
by zmfowler Thu, 2022-07-14 05:34 |
|
|
Error with RoseTTAFold by sc19 » Thu, 2022-07-14 03:40 |
0 |
484 |
by sc19 Thu, 2022-07-14 03:40 |
|
|
Ligand Docking with ROSETTA by sc19 » Thu, 2022-07-14 01:32 |
0 |
454 |
by sc19 Thu, 2022-07-14 01:34 |
|
|
Per residue total score by johnnytam100 » Wed, 2022-07-13 21:57 |
0 |
433 |
by johnnytam100 Wed, 2022-07-13 21:57 |
|
|
SnugDock Partners parameter by tyang39 » Fri, 2022-07-08 10:02 |
1 |
504 |
by rmoretti Fri, 2022-07-08 10:27 |
|
|
Pepspec - sequence sampling by almeida85 » Thu, 2022-06-23 04:05 |
0 |
445 |
by almeida85 Thu, 2022-06-23 05:50 |
|
|
Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0. by daniloboskovic » Fri, 2019-11-08 08:24 |
1 |
2,282 |
by Payne Tue, 2022-06-21 07:25 |
|
|
Could not open file /Rosetta/rosetta_bin_linux_2020.08.61146_bundle/main/database/citations/rosetta_citations by yliang20 » Wed, 2022-06-15 11:26 |
2 |
683 |
by yliang20 Wed, 2022-06-15 13:46 |
|
|
Segmentation Fault in Rosetta CM Hybridize by yliang20 » Mon, 2022-06-06 17:25 |
2 |
703 |
by yliang20 Tue, 2022-06-07 08:36 |
|
|
Local docking- should I use KIC? by seayoung lee » Fri, 2022-05-27 02:45 |
0 |
510 |
by seayoung lee Fri, 2022-05-27 02:45 |
|
|
Params for a stapled helix peptide by e3lm » Thu, 2022-05-26 12:55 |
0 |
482 |
by e3lm Thu, 2022-05-26 12:55 |
|
|
Noncanonical amino acids by wsgosal » Tue, 2014-03-18 05:29 |
8 |
6,133 |
by e3lm Thu, 2022-05-26 12:51 |
|
|
IL-2 gets better binding with beta / gamma by tonycheng1688 » Wed, 2022-05-25 10:23 |
0 |
512 |
by tonycheng1688 Wed, 2022-05-25 10:23 |
|
|
Relax evaluates protein-DNA complexes? by pablogalazdavison » Thu, 2022-05-12 12:05 |
2 |
743 |
by pablogalazdavison Fri, 2022-05-20 12:27 |
|
|
Enzyme Design Not Editing Structure by liuwenxi » Wed, 2022-05-18 10:12 |
0 |
491 |
by liuwenxi Wed, 2022-05-18 10:12 |
|
|
minimize_ppi.mpi.linuxgccrelease doesn't use jd2? by e3lm » Tue, 2022-05-17 11:58 |
0 |
500 |
by e3lm Tue, 2022-05-17 11:58 |
|
|
Disulfidize- "Extra content at the end of the document" by ldlamini » Tue, 2022-05-17 02:37 |
1 |
659 |
by rmoretti Tue, 2022-05-17 07:29 |
|
|
Flex_ddG突变设计 by wangtao » Thu, 2022-05-05 02:46 |
0 |
557 |
by wangtao Thu, 2022-05-05 02:46 |
|
|
Dimeric interface redesign by kjs1728 » Mon, 2022-05-02 21:57 |
0 |
491 |
by kjs1728 Mon, 2022-05-02 21:57 |
|
|
Pepspec error by almeida85 » Mon, 2022-05-02 04:07 |
1 |
579 |
by almeida85 Mon, 2022-05-02 05:05 |
|
|
about “protein mimic designer” by sia » Wed, 2022-04-27 19:59 |
0 |
504 |
by sia Wed, 2022-04-27 19:59 |
|
|
How to Perform point mutations with NCAA by Subhrodeep Saha » Tue, 2021-06-22 02:05 |
2 |
1,236 |
by dnamkr Fri, 2022-04-22 17:00 |
|
|
Ways to improve AbRelax performance? by Corvin » Tue, 2022-04-19 06:10 |
2 |
781 |
by Corvin Thu, 2022-04-21 00:50 |
|
|
trRosetta - Nan occuring in Hbond calculation by y_atsmonraz » Mon, 2021-10-04 09:16 |
1 |
772 |
by shivarawat115 Mon, 2022-04-11 16:10 |
|
|
problem in using "zinc_site_redesign" tool by Isomerase » Mon, 2022-03-28 01:19 |
0 |
476 |
by Isomerase Mon, 2022-03-28 01:19 |
|
|
snugdock run error: Sequence for partner1 does not match first member of ensemble1 by pagumaaaaa » Fri, 2022-03-25 01:21 |
0 |
518 |
by pagumaaaaa Fri, 2022-03-25 01:21 |
|
|
How do I change the default Compiler for Rosetta？ by pagumaaaaa » Wed, 2022-03-16 00:23 |
2 |
878 |
by pagumaaaaa Thu, 2022-03-24 22:40 |
|
|
Modelling at defined pH - for pmutscan - pH:mode not working by cagfa1 » Tue, 2022-03-15 04:05 |
1 |
729 |
by Rituparna_Saman... Wed, 2022-03-23 11:21 |
|
|
RosettaDock 4.0 ambiguous ERROR by sam_dc » Fri, 2022-03-18 09:36 |
3 |
1,179 |
by rmoretti Tue, 2022-03-22 09:10 |
|
|
Error in a new docking by jrcf » Wed, 2017-05-17 19:26 |
2 |
3,587 |
by tingting Tue, 2022-03-15 23:55 |
|
|
simple_cycpep_predict thioether_lariat option by Ken » Mon, 2022-03-14 15:14 |
0 |
531 |
by Ken Mon, 2022-03-14 15:14 |
|
|
small ligand docking in Ubuntu 20.04, please help by guowuchen » Sun, 2022-03-06 18:12 |
2 |
932 |
by guowuchen Mon, 2022-03-07 23:34 |
|
|
Rosetta Matcher not recognizing protonation forms of CST files like CYZ, HIS_D, etc by Hirbond » Tue, 2022-03-01 13:16 |
0 |
593 |
by Hirbond Tue, 2022-03-01 13:16 |
|
|
Using GlycanDock and the Antibody Affinity Maturation protocol. by tbelec » Mon, 2022-02-28 12:37 |
0 |
633 |
by tbelec Mon, 2022-02-28 12:37 |
|
|
DockingProtocol by Soler » Fri, 2022-02-11 00:12 |
3 |
1,168 |
by gezmi Tue, 2022-02-15 21:47 |
|
|
RAbD with N-term，Proline-like ncaa returns segmentation fault during CCDEndsGraftMover by CordycepsLin » Sun, 2022-02-06 19:09 |
9 |
2,070 |
by CordycepsLin Wed, 2022-02-09 19:39 |
|
|
Generating the 3-mer and 9-mer fragments by Prasoon » Wed, 2022-02-09 09:04 |
0 |
711 |
by Prasoon Wed, 2022-02-09 09:04 |
|
|
FastRelaxMover parameters for antibody-antigen interaction analysis by samuel_k » Thu, 2022-01-27 01:08 |
0 |
646 |
by samuel_k Thu, 2022-01-27 01:08 |
|
|
Relax in membrane pull my protein out of the membrane by Martin Floor » Wed, 2022-01-26 07:46 |
0 |
684 |
by Martin Floor Wed, 2022-01-26 07:46 |
|
|
Can anybody suggests some flags to run Rifdock? by Hyunmi Song » Sun, 2022-01-23 16:45 |
0 |
803 |
by Hyunmi Song Sun, 2022-01-23 16:45 |
|
|
ligand dock into HEM containg pdb by syntekabio2019 » Thu, 2022-01-20 03:05 |
0 |
667 |
by syntekabio2019 Thu, 2022-01-20 03:05 |
|
|
charge grid in rosetta ligand docking using rosetta script by syntekabio2019 » Mon, 2022-01-17 23:53 |
0 |
654 |
by syntekabio2019 Mon, 2022-01-17 23:53 |
|
|
I need help with cst file the paper: De Novo Computational Design of Retro-Aldol Enzymes by Wenithor » Thu, 2022-01-06 12:20 |
0 |
645 |
by Wenithor Thu, 2022-01-06 12:20 |
|
|
Protein design: Ligand binding between two units of a homodimer by chemotaxis_123 » Sun, 2022-01-02 16:01 |
0 |
590 |
by chemotaxis_123 Sun, 2022-01-02 16:01 |
|
|
[LoopModelerMover] ERROR: Can't build a fold tree from a loop with an unspecified cut point. by dgm3 » Sun, 2021-12-26 18:32 |
1 |
804 |
by dgm3 Fri, 2021-12-31 17:42 |
|
|
ERROR: APBS failed to generate the result file. by bhavranek » Sat, 2021-12-18 11:01 |
1 |
745 |
by bhavranek Sun, 2021-12-26 21:05 |
|
|
Question about running scallo by danbo » Mon, 2021-11-29 23:25 |
8 |
2,142 |
by danbo Wed, 2021-12-22 23:51 |
|
|
getting a3m files by alonwenger » Wed, 2021-12-15 02:38 |
2 |
1,522 |
by alonwenger Sat, 2021-12-18 12:32 |
|
|
simple_cycpep_predict with N-term acetylation by Ken » Fri, 2021-12-17 09:49 |
0 |
610 |
by Ken Fri, 2021-12-17 09:49 |
|
|
Segfault error while running MR Rosetta in Phenix by memilton » Thu, 2021-12-16 09:09 |
0 |
670 |
by memilton Thu, 2021-12-16 09:09 |
|
|
Remodel's problem in treatment with non-protein residues by Corvin » Mon, 2021-12-13 09:07 |
0 |
592 |
by Corvin Mon, 2021-12-13 09:07 |
|
|
Relaxed proteins show higher clash score in molprobity results. by Wang Zhe » Fri, 2021-12-03 04:32 |
4 |
1,692 |
by smlewis Wed, 2021-12-08 13:02 |
Log in to post new content in the forum.
