ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42

Hi Yu,

May I know if you have find any solution to this error?

I also facing similar problem when running rosettaCM.

Same crashes at stage 4,

======================================================================================================================================
   Stage 4                                                         
   Folding with score3 for 400
protocols.hybridization.FoldTreeHybridize: Stage 4 loop iteration 1: small fragments trials
protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: 7159.45 7159.45
protocols.moves.TrialCounter:  ChunkTrialMover trials=      8;  accepts= 0.3750;  energy_drop/trial=  -0.02618
protocols.moves.TrialCounter: WeightedFragment trials=    392;  accepts= 0.0357;  energy_drop/trial=  -0.11127
protocols.hybridization.FoldTreeHybridize: Stage 4 loop iteration 2: small fragments smooth trials
protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: 7199 7195.43
protocols.moves.TrialCounter:  ChunkTrialMover trials=      1;  accepts= 1.0000;  energy_drop/trial=   0.00000
protocols.moves.TrialCounter: WeightedFragment trials=    399;  accepts= 0.0476;  energy_drop/trial=  -0.01318
protocols.hybridization.FoldTreeHybridize: Stage 4 loop iteration 3: small fragments smooth trials
protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: 7218.91 7218.91
protocols.moves.TrialCounter:  ChunkTrialMover trials=      5;  accepts= 0.6000;  energy_drop/trial=  -0.15344
protocols.moves.TrialCounter: WeightedFragment trials=    395;  accepts= 0.0582;  energy_drop/trial=  -0.05075
core.kinematics.FoldTree: delete_jump_seqpos: deleting jump 1
core.kinematics.FoldTree: delete_jump_seqpos: renumbering jump 22 to 1
protocols.hybridization.HybridizeProtocol: Realigning template domains to stage1 pose.
core.util.switchresiduetypeset: [ WARNING ] When switching to a centroid ResidueTypeSet:  Pose already contains centroid ResidueTypes.
protocols.hybridization.CartesianHybridize: RUNNING FOR 4 MACROCYCLES
protocols.hybridization.CartesianHybridize:  total_res=587   prot_res=587
protocols.hybridization.CartesianHybridize: CYCLE 1
protocols.hybridization.CartesianHybridize:   setting bonded weight = 0
protocols.hybridization.CartesianHybridize:   setting bonded angle weight = 0
protocols.hybridization.CartesianHybridize:   setting bonded length weight = 0
protocols.hybridization.CartesianHybridize:   setting bonded torsion weight = 0
protocols.hybridization.CartesianHybridize:   setting cst    weight = 0.5
protocols.hybridization.CartesianHybridize:   setting vdw    weight = 0.1
core.energy_methods.CartesianBondedEnergy: Creating new peptide-bonded energy container (587)
core.energy_methods.CartesianBondedEnergy: Adding undefined angle ORN: CA,N,H to DB with theta0 = 2.07956 , Ktheta = 80
core.energy_methods.CartesianBondedEnergy: Adding undefined angle ORN: N,CA,C to DB with theta0 = 1.94081 , Ktheta = 80
core.energy_methods.CartesianBondedEnergy: Adding undefined angle ORN: N,CA,CB to DB with theta0 = 1.92861 , Ktheta = 80
core.energy_methods.CartesianBondedEnergy: Adding undefined angle ORN: N,CA,CEN to DB with theta0 = 1.9856 , Ktheta = 80
core.energy_methods.CartesianBondedEnergy: Adding undefined angle ORN: C,CA,CB to DB with theta0 = 1.92174 , Ktheta = 80
core.energy_methods.CartesianBondedEnergy: Adding undefined angle ORN: C,CA,CEN to DB with theta0 = 2.12444 , Ktheta = 80
core.energy_methods.CartesianBondedEnergy: Adding undefined angle ORN: CB,CA,CEN to DB with theta0 = 0.317107 , Ktheta = 80
core.energy_methods.CartesianBondedEnergy: Adding undefined angle ORN: CA,C,O to DB with theta0 = 2.10836 , Ktheta = 80
core.energy_methods.CartesianBondedEnergy: Adding undefined length ORN: N,CA, to DB with d0 = 1.458 , Kd = 300
core.energy_methods.CartesianBondedEnergy: Adding undefined length ORN: N,H, to DB with d0 = 1.01 , Kd = 300
core.energy_methods.CartesianBondedEnergy: Adding undefined length ORN: CA,C, to DB with d0 = 1.52326 , Kd = 300
core.energy_methods.CartesianBondedEnergy: Adding undefined length ORN: CA,CB, to DB with d0 = 1.52951 , Kd = 300
core.energy_methods.CartesianBondedEnergy: Adding undefined length ORN: CA,CEN, to DB with d0 = 3.51447 , Kd = 300
core.energy_methods.CartesianBondedEnergy: Adding undefined length ORN: C,O, to DB with d0 = 1.23101 , Kd = 300
core.energy_methods.CartesianBondedEnergy: Adding undefined angle ORN: C,N,CA to DB with theta0 = 2.12407 , Ktheta = 80
core.energy_methods.CartesianBondedEnergy: Adding undefined angle ORN: CB,CA,C to DB with theta0 = 1.92174 , Ktheta = 80
core.energy_methods.CartesianBondedEnergy: Adding undefined angle ORN: CA,C,N to DB with theta0 = 2.02807 , Ktheta = 80
core.energy_methods.CartesianBondedEnergy: Adding undefined angle ORN: O,C,N to DB with theta0 = 2.14676 , Ktheta = 80
core.energy_methods.CartesianBondedEnergy: Adding undefined angle ORN: CA,N,C to DB with theta0 = 2.12407 , Ktheta = 80
core.energy_methods.CartesianBondedEnergy: Adding undefined angle ORN: H,N,C to DB with theta0 = 2.07956 , Ktheta = 80

AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS.

======================================================================================================================================

Crash.log:

[END_BACKTRACE]

[FILE]: SIGSEGV
[LINE]: 11
[START_MESSAGE]
Segmentation Fault

[END_MESSAGE]
[END_CRASH_REPORT]

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Thanks in advanced.

ac