Dear community,
BACKGROUND:
Dear Sir and Madam,
I would like to ask you regarding the ways to improve the performance for either FragmentPicker and AbRelax applications.
Hi,
I work at the APHP, a university hospital linked to the university of Paris, and in a research unit of INSERM, the French national institute of health and medical research. The email addresses of these 2 organizations are not listed: aphp.fr and inserm.fr. Is it possible to add them ?
Thanks
Hello,
I submitted an antibody task to the ROSIE server (job ID 101598) and it failed with the following error:
Hi Steven, Rocco, et al.,
Hello Rosetta users,
I have a few questions with respect to antibody modelling in Rosetta.
The current version of Rosetta I'm using is a pre-compiled version 3.13 of Linux. I always get an error when I perform the first step of Antibody Modeling:
antibody.static.linuxgccrelease \
-fasta antibody_chains.fasta
I checked and found that the solution to this problem was to install a higher version of GCC.
Hi all,
I'm trying to use simple_cycpep_predict with the option thioether_lariat for cyclization_type but seem to be running into a problem. Based on what I read in the help docs, "thioether_lariat" should be an option that is possible, but when I tried to use it, I get:
ERROR: Illegal value specified for option -cyclic_peptide:cyclization_type : thioether_lariat
Is this an option that got removed and the help pages just weren't updated? Or am I missing something? I am attaching the the sequence that I am trying to model.
I am using min_mover (lbfgs_armijo_nonmonotone) for minimizing the energy function of a protein for structure prediction in pyrosetta.
In trying to get an energy plot over iterations, i set min_mover.max_iter(1) to 1. After each iteration of min_mover, I pause the optimization, store the current energy, and continue.
When I run the py file,it occured:
from rosetta.core.scoring.sasa import SasaCalc
ModuleNotFoundError: No module named 'rosetta.core'
I don't know how to handle it, thanks for every help
Hi,
I want to use RoseTTAfold on the Robetta.new server but it requires an a3m file I dont know how to generate.
I saw a script on the github page (https://github.com/RosettaCommons/RoseTTAFold/blob/main/input_prep/make_msa.sh) that to my understanding is supposed to convert fasta to a3m but it dosent seem to work and I get the following error:
