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Structure prediction

Creating model of 89-90 residues by ab initio methodology-help

Submitted by krlitros87 on Sun, 2014-05-25 12:12
Category: 
Structure prediction

Dear rosetta users,
This is my first time using ab initio modelling in order to obtain a protein's structure (though i have some experience on comparative/homology modelling).
I'm trying to obtain the structure of 2 proteins of 89 (COR15A) and 90 (COR15B) residues respectively. Sadly i can't use the homology-modelling methodology because i don't have a proper template to use it.
Anyway, i have already built 100 structures of one of my protein (COR15B) by using the following command:

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Rosetta 3 - Applications

Access sigma values for rotamers

Submitted by pachecoj on Thu, 2014-05-15 07:10
Category: 
Structure prediction

Is it possible to get access, through the class structure, to *other* fields of the Dunbrack rotamer library? After building the rotamers for a particular pose I would like to be able to get the sigma values of each chi as well as the Dunbrack probability values, for each rotamer.

I've been drilling down through the class structure and think I see how to get the probability values, but I'm not seeing the sigmas anywhere.

Jason

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Rosetta 3 - General

Connecting linkers

Submitted by Prasanth Kumar on Tue, 2014-05-06 00:53
Category: 
Structure prediction
Design

Hello,
I plan to design a small protein fragment using flexible linkers (to connect the breaks) out of a larger protein.
Using which rosetta application i should use to put the residues of the flexible linkers to get the complete 3D structure of the shorter protein.

Please Help me!
Thanks in advance
K.Prasanth

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Rosetta 3 - Applications

Rosetta3 Tutorials

Submitted by smlewis on Fri, 2011-11-18 07:33
Category: 
Structure prediction

At RosettaCON2011, many of the developers and users got together to write documentation for an afternoon under the beautiful, central Washington sunshine. These tutorials will be officially released shortly (at the same download location as Rosetta, http://www.rosettacommons.org/software/).

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Rosetta 3 - General

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