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ROSIE - General

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Sticky topic Sticky: ROSIE FAQ
by Sergey » Mon, 2013-04-08 10:41
6
27,493 by G-Jade
Fri, 2020-12-18 22:40
Normal topic Academic email
by ruuua » Wed, 2022-08-03 01:45
1
60 by Sergey
Thu, 2022-08-04 15:58
Normal topic Academic email
by Timothius » Sun, 2022-07-24 15:51
1
104 by Sergey
Thu, 2022-07-28 14:28
Normal topic Ligand docking score.sc file containing more structures than produced
by Delfosse57 » Sat, 2022-07-16 10:44
2
108 by Delfosse57
Mon, 2022-07-18 11:09
Normal topic Academic email
by Morteza Ghandadi » Sun, 2022-07-17 00:36
1
87 by rmoretti
Mon, 2022-07-18 06:59
Normal topic Academic address not verified during rosie login
by s.shankar » Thu, 2022-07-14 09:40
2
115 by s.shankar
Fri, 2022-07-15 12:31
Normal topic Running ROSIE from terminal
by sc19 » Thu, 2022-07-14 01:09
0
61 by sc19
Thu, 2022-07-14 01:09
Normal topic account does not have verified academic email address
by haria256 » Sat, 2022-07-02 03:33
0
105 by haria256
Sat, 2022-07-02 03:33
Normal topic Antibody scoring
by larae » Wed, 2022-06-22 11:14
1
119 by rmoretti
Wed, 2022-06-22 12:00
Normal topic FARFAR2 - Extra Minimize Hangs on Submittal
by jvogt » Thu, 2022-06-16 09:41
0
94 by jvogt
Thu, 2022-06-16 09:41
Normal topic Beta-Peptide Design Protocol now available for academic users
by Sergey » Wed, 2012-11-28 12:32
1
6,149 by jaw315
Thu, 2022-06-09 10:26
Normal topic Academic domain not listed
by benjv » Wed, 2022-05-25 10:31
1
169 by Sergey
Thu, 2022-05-26 10:23
Normal topic Academic address not verified during rosie login
by pomden31 » Thu, 2022-05-26 10:04
1
161 by Sergey
Thu, 2022-05-26 10:21
Normal topic Relax application before ROSIE
by mwinn99 » Wed, 2022-05-25 13:23
0
122 by mwinn99
Wed, 2022-05-25 13:23
Normal topic Academic domains list
by aozalevsky » Tue, 2022-05-24 09:24
1
156 by rmoretti
Wed, 2022-05-25 08:25
Normal topic academic institution domain is not listed
by ruma99 » Tue, 2022-05-24 08:33
1
163 by Sergey
Tue, 2022-05-24 10:45
Normal topic Academic domain not listed
by SKlab » Fri, 2022-05-20 12:03
1
142 by Sergey
Fri, 2022-05-20 12:14
Normal topic academic institution domain is not listed
by minzhi » Mon, 2022-05-16 14:26
1
181 by Sergey
Wed, 2022-05-18 14:05
Normal topic Academic domain not listed
by larae » Mon, 2022-05-02 02:50
4
300 by SKlab
Mon, 2022-05-16 09:12
Normal topic Correctly Formatting a PDB file for analysis of a Zinc Finger Motif
by rslack » Thu, 2022-04-28 18:19
0
130 by rslack
Thu, 2022-04-28 18:38
Normal topic Cannot login ROSIE-2 (docking-3)
by Pdk089 » Mon, 2022-04-25 11:30
1
185 by Sergey
Mon, 2022-04-25 11:48
Normal topic Rosetta-Vienna RNP-ddG failed
by Athena Chu » Mon, 2022-04-18 18:21
0
116 by Athena Chu
Mon, 2022-04-18 18:21
Normal topic Academic domain missing
by yoann.vial » Wed, 2022-04-13 00:20
2
223 by Sergey
Fri, 2022-04-15 10:20
Normal topic My academic institution domain is not listed.
by mebigi » Fri, 2022-04-08 07:44
2
256 by mebigi
Mon, 2022-04-11 16:35
Normal topic Antibody job failed
by larae » Fri, 2022-03-25 11:04
1
196 by rmoretti
Tue, 2022-03-29 15:14
Normal topic Results are NOT emailed
by alsayeghkn » Wed, 2022-03-23 08:55
0
135 by alsayeghkn
Wed, 2022-03-23 08:55
Normal topic Support for local install of ROSIE?
by jjv5 » Mon, 2022-03-21 08:58
1
215 by Sergey
Mon, 2022-03-21 12:10
Normal topic Log in to rosie
by dnamkr » Tue, 2022-03-15 11:04
1
252 by Sergey
Tue, 2022-03-15 11:28
Normal topic sequence_tolerance queue stuck
by Fred Muskett » Fri, 2021-09-03 08:08
2
562 by line
Fri, 2022-02-25 00:40
Normal topic ddG_RNA final energy different when modeling WT sequence
by AlexLukasiewicz » Tue, 2022-01-25 14:41
0
249 by AlexLukasiewicz
Tue, 2022-01-25 14:41
Normal topic Sequence Tolerance broken links?
by dnamkr » Fri, 2021-10-22 11:34
0
321 by dnamkr
Fri, 2021-10-22 11:34
Normal topic farfar2 error
by debostuti » Thu, 2021-10-07 23:10
1
430 by everyday847
Fri, 2021-10-08 10:29
Normal topic Stepwise error
by debostuti » Wed, 2021-10-06 08:57
2
443 by debostuti
Fri, 2021-10-08 00:29
Normal topic Antibody Job Failed
by aquilesms89 » Thu, 2020-08-13 08:50
0
998 by aquilesms89
Thu, 2020-08-13 08:50
Normal topic getting right protonation state from PKa of Rosie
by hajar » Fri, 2020-07-24 16:24
0
705 by hajar
Fri, 2020-07-24 16:24
Normal topic Questions about SnugDock result analysis
by LTJ » Thu, 2020-07-02 17:41
0
837 by LTJ
Thu, 2020-07-02 17:41
Normal topic ROSIE pKa calculation issue
by lijum » Mon, 2020-06-15 12:12
0
810 by lijum
Mon, 2020-06-15 12:12
Normal topic FARFAR2 error
by lijunnju » Tue, 2020-02-11 08:09
2
1,781 by Lipgloss
Mon, 2020-04-20 01:56
Normal topic my status jobs been queued in such longer time
by Atirah » Fri, 2020-04-10 02:55
0
1,081 by Atirah
Fri, 2020-04-10 02:57
Normal topic ROSETTA design affinity optimization
by wentlewi » Mon, 2020-02-03 01:42
0
1,040 by wentlewi
Mon, 2020-02-03 01:42
Normal topic Snugdock
by MIke Kent » Mon, 2019-12-16 22:10
4
2,788 by MIke Kent
Tue, 2019-12-24 08:02
Normal topic Compaing interface socre of different ligands with the same protein structure
by Caulobacter » Tue, 2019-12-10 12:53
1
1,158 by rmoretti
Tue, 2019-12-10 13:10
Normal topic Linear peptide versus cyclic peptide binding prediction
by gabr » Mon, 2019-11-18 12:25
2
2,109 by gabr
Tue, 2019-11-19 13:57
Normal topic FARFAR2 structure prediction give a circular RNA
by jitz » Thu, 2019-07-25 04:58
1
1,402 by everyday847
Mon, 2019-11-11 14:39
Normal topic I have jobs queued for nearly 1 month
by jessye » Thu, 2019-10-10 03:36
0
961 by jessye
Thu, 2019-10-10 03:36
Normal topic antibody modeling fail
by jessye » Tue, 2019-07-02 01:57
1
1,326 by rmoretti
Wed, 2019-07-10 09:09
Normal topic RMSD
by jessye » Tue, 2019-07-02 01:54
1
1,620 by rmoretti
Tue, 2019-07-09 09:49
Normal topic error in peptiderive job result
by PRITAM » Wed, 2019-05-08 09:33
1
1,259 by rmoretti
Mon, 2019-06-24 12:30
Normal topic Rosie vip function fails on multiple tries
by Amy F » Sat, 2019-06-15 12:51
1
1,221 by rmoretti
Mon, 2019-06-24 12:20
Normal topic Nanobody prediction using ROSIE ?
by esozdemir » Thu, 2019-06-20 11:14
1
1,388 by rmoretti
Mon, 2019-06-24 12:02
Normal topic How to run PLOT LHOC on Results from Rosie Server
by sujigeorge1979 » Mon, 2019-06-10 19:32
3
2,166 by jeliazkov
Mon, 2019-06-24 11:49
Normal topic Docking results
by sujigeorge1979 » Wed, 2019-06-12 23:40
1
1,295 by jeliazkov
Mon, 2019-06-17 06:07
Normal topic SnugDocking result interpretation
by jessye » Mon, 2019-05-27 03:43
1
1,327 by jeliazkov
Tue, 2019-05-28 13:36
Normal topic Bound Ligand Protein-Protein Docking
by ajaniharesh » Mon, 2019-04-08 12:18
1
1,257 by rmoretti
Thu, 2019-05-09 13:38
Normal topic Antibody prediction with ROSIE failed
by Sunyp_IM » Wed, 2017-08-02 23:45
4
3,264 by Sergey
Thu, 2019-05-09 08:15
Normal topic Ligand Binding
by KS Siddiqui » Thu, 2019-04-25 01:01
0
937 by KS Siddiqui
Thu, 2019-04-25 01:01
Normal topic Snugdock versus Docking with an ensemble of protein conformations
by MIke Kent » Fri, 2019-03-29 10:07
1
1,378 by jeliazkov
Fri, 2019-03-29 10:34
Normal topic Does Snugdock remodeling of H3 loops include the kink constraint as in RosettaAntibody?
by MIke Kent » Wed, 2019-03-27 10:09
2
1,748 by MIke Kent
Thu, 2019-03-28 11:26
Normal topic Regarding snugdock Ag-Ab score
by ss » Mon, 2018-12-10 14:47
7
4,570 by ss
Thu, 2019-01-03 09:08
Normal topic SNUGDOCK
by harsh » Tue, 2018-10-09 23:58
1
1,576 by Sergey
Tue, 2018-10-16 15:52
Normal topic antibody-antigen interface score
by jessye » Sun, 2018-07-01 21:12
0
1,181 by jessye
Sun, 2018-07-01 21:12
Normal topic problem in downloading result from backrub server
by ladimafakher » Sun, 2018-07-01 00:50
0
963 by ladimafakher
Sun, 2018-07-01 00:50
Normal topic Protein protein docking
by drrahulsuresh » Wed, 2018-05-02 12:52
1
1,742 by smlewis
Thu, 2018-05-03 11:45
Normal topic SnugDock: chain_id H represents more than one chain
by tweetman » Wed, 2018-05-02 04:24
1
1,808 by sheehajh
Wed, 2018-05-02 06:38
Normal topic proteins.pdb: Not enough chains in submitted protein! [At least 2 chains should be present, found chains: [u'A']...]
by Loki01 » Mon, 2018-03-19 13:34
2
2,269 by Loki01
Mon, 2018-03-19 13:45
Normal topic Deleting ones "own" guest job a to reduce server load
by Protein fan » Thu, 2017-10-26 01:26
1
1,834 by rmoretti
Fri, 2017-12-01 11:24
Normal topic Comparing Protein-Protein Docking interactions between WT and mutant proteins
by dflaher » Fri, 2017-11-03 06:18
1
1,918 by rmoretti
Fri, 2017-12-01 11:21
Normal topic Modeling Antibody Structure failed
by Sunyp_IM » Sun, 2017-08-06 02:59
1
1,945 by rmoretti
Mon, 2017-08-14 15:09
Normal topic Rosie Docking Server-Energy function
by jsv » Fri, 2017-07-21 08:26
1
1,711 by ssrb
Fri, 2017-07-21 09:29
Normal topic SNUGDOCK
by adva » Sun, 2017-07-16 00:46
1
1,617 by rmoretti
Mon, 2017-07-17 07:57
Normal topic Fv modelling Job Mab_Top 「№33253」
by pr.henriques » Wed, 2017-07-12 03:13
3
3,015 by rmoretti
Thu, 2017-07-13 15:19
Normal topic Numbering failed
by Sbrendle » Mon, 2017-06-05 08:07
3
3,293 by rmoretti
Thu, 2017-06-29 07:58
Normal topic Error of non standard amino acid (SnugDock)
by bt13d072 » Wed, 2017-03-01 19:51
1
2,219 by rmoretti
Mon, 2017-03-06 09:14
Normal topic Rosie server stuck??
by David Weis » Sun, 2017-03-05 13:37
1
1,904 by smlewis
Mon, 2017-03-06 08:58
Normal topic docking2: will the real prepacked PDB stand up?
by David Weis » Tue, 2017-02-21 10:04
3
3,057 by rmoretti
Tue, 2017-02-28 08:34
Normal topic RMSD - Score
by LT » Thu, 2017-02-23 12:59
1
2,110 by rmoretti
Thu, 2017-02-23 13:03
Normal topic Sequence Tolerance Failed
by Dstork » Tue, 2017-01-03 07:13
6
5,227 by Sergey
Mon, 2017-01-09 16:37
Normal topic problems with docking
by msironi » Thu, 2016-10-27 00:46
3
3,405 by Sergey
Mon, 2016-11-21 11:03
Normal topic peptiderive problem
by Fatemeh Arabi » Fri, 2016-10-14 02:54
3
3,368 by Sergey
Mon, 2016-11-14 14:48
Normal topic Ligand docking error Could not find essential file trigger-00001.ligand_docking_protocol
by iphan » Mon, 2016-09-12 10:58
4
4,786 by rmoretti
Mon, 2016-10-03 10:44
Normal topic Rosetta Antibody
by Maryam_tabasinezhad » Sun, 2016-08-28 00:29
1
2,139 by smlewis
Sun, 2016-08-28 12:04
Normal topic chothia numbering error of FR_L1
by Sbrendle » Mon, 2016-08-22 06:58
1
2,001 by nmarze
Mon, 2016-08-22 11:57
Normal topic Docking-Error 500
by edebenedictis » Wed, 2016-08-03 12:34
2
2,802 by Sergey
Wed, 2016-08-03 14:21
Normal topic supercharge problems
by hooria » Tue, 2016-06-14 05:29
2
2,925 by smlewis
Wed, 2016-06-15 07:50
Normal topic Supercharge server
by alva » Wed, 2014-07-02 17:36
2
3,815 by hooria
Mon, 2016-06-13 11:08
Normal topic CDR are not being recognized
by wildchipiron » Mon, 2016-05-23 15:03
2
2,908 by nmarze
Wed, 2016-05-25 14:54
Normal topic Docking two proteins with interfacing ligand
by luisalles » Tue, 2016-04-05 23:56
1
2,257 by rmoretti
Fri, 2016-04-29 09:27
Normal topic Problem in refinement job in Docking2
by aninditaseal » Fri, 2016-04-22 07:12
1
2,032 by Sergey
Fri, 2016-04-22 11:13
Normal topic Problem with ROSIE antibody modeling
by wildchipiron » Thu, 2016-04-14 20:00
0
1,547 by wildchipiron
Thu, 2016-04-14 20:00
Normal topic LIGAND APPEARS TO BE DOCKED INTO EMPTY SPACE
by gabeliluo1 » Wed, 2016-01-06 16:23
5
5,775 by rmoretti
Thu, 2016-02-04 07:39
Normal topic ROSIE antibody modeling- discontinuity in backbone
by wagnerek » Tue, 2015-10-27 10:18
1
2,313 by rmoretti
Wed, 2015-11-25 12:53
Normal topic Score and I_sc in ROSIE symmetric_docking output
by AdoCbl » Sun, 2015-08-09 00:26
11
11,675 by rmoretti
Tue, 2015-11-24 16:33
Normal topic docking2 results seem to not have contacting residues
by wagnerek » Tue, 2015-10-27 10:30
4
5,037 by AdoCbl
Sun, 2015-11-15 08:10
Normal topic RMSD values for symmetric_docking clockwise vs counterclockwise cyclical outputs
by AdoCbl » Sun, 2015-10-18 12:49
1
2,340 by IAndre
Mon, 2015-10-19 01:19
Normal topic Fnat=NaN in a docking2 job
by AdoCbl » Sun, 2015-10-18 12:19
2
3,422 by AdoCbl
Sun, 2015-10-18 15:52
Normal topic "in_progress" decoy files in some docking2 local_docking job tar archives
by AdoCbl » Sun, 2015-10-18 13:47
1
2,346 by rmoretti
Sun, 2015-10-18 13:59
Normal topic Ways to improve ROSIE symmetric_docking jobs
by AdoCbl » Wed, 2015-09-23 13:39
4
5,216 by IAndre
Tue, 2015-09-29 08:10
Normal topic Let docking2 jobs list the scores for the input proteins.pdb file
by AdoCbl » Wed, 2015-09-23 12:24
1
2,330 by AdoCbl
Thu, 2015-09-24 11:38
Normal topic Ways to improve both docking2 and symmetric_docking jobs
by AdoCbl » Wed, 2015-09-23 14:43
0
1,549 by AdoCbl
Wed, 2015-09-23 15:35
Normal topic Ways to improve ROSIE docking2 jobs
by AdoCbl » Wed, 2015-09-23 15:12
0
1,508 by AdoCbl
Wed, 2015-09-23 15:12
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