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Number of Monte Carlo Cycles for FARFAR2

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Number of Monte Carlo Cycles for FARFAR2
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Hi,

I observed that the current default number of Monter Carlo cycles (-cycles option) for rna_denovo is 100000. If it is reduced to 20000, does it significantly affect the accuracy of the models built?

TIA,

Mandar

Category: 
Nucleic Acids
Post Situation: 
Unsolved
Tue, 2024-03-12 19:11
mandar
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It'll probably be fine unless the number of nucleotides with unknown conformation (i.e., to be modeled; not counting helices or elements input from templates) is quite large, say 50+.

Tue, 2024-03-12 21:09
everyday847
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thanks!

Tue, 2024-03-12 23:07
mandar