I am now working on a protein with multiple chains, and the total amino acids exceeds 1000. So I need to submit each chain one by one, get the individual 3-mer and 9-mer fragments, then concatenate them.
The attachment is the 3-mer file. After concatenating them, do I only need to adjust these three places?
I will then use the 3-mer and 9-mer for the RosettaCM.
By the way, I plan to use RosettaCM to build a structure of 16,000 residues, which is an asymmetric unit of an adenovirus. Is it possible?
Any feedback is welcomed! Thank you!