Hello all,
I am new to rosetta trying to follow the tutorials on line. I am currently working on with the mac binaries on MacOS mojave
Seems I cannot generate a score file in the working directory.
the following input is being done within source directory
INPUT: $ROSETTA3/bin/score_jd2.default.macosclangrelease -in:file:s input_files/1qys.pdb
Error:
ERROR: Cannot open file "input_files/1qys.pdb"
ERROR:: Exit from: src/core/import_pose/import_pose.cc line: 362
Error: [ ERROR ] ERROR: Exception caught by JobDistributor while trying to get pose from job '1qys_0001'
Error: [ ERROR ] Treating failure as bad input; canceling similar jobs
[ ERROR ]: Caught exception:
File: src/core/import_pose/import_pose.cc:362
[ ERROR ] UtilityExitException
ERROR: Cannot open file "input_files/1qys.pdb"
thanks all,
Cyrrus
Rosetta will look for files based on the current working directory. My off-the-cuff guess is that your current working directory does not have an input_files directory, or if it does, it's missing the 1qys.pdb file.
If you do an `ls input_files/1qys.pdb` in the same directory you launched your score_jd2 is it able to find the file? If not, you'll either have to run Rosetta from a directory where it is present, or copy over the files from where they are to your working directory.