Take 6A5E for example,it has multiple breaks. i try to feed a blueprint file with all loops,however it turn out only the first loop was remodel .guess what when i view it in pymol i still got the same number of break .
here is my command$> mpiexec -np 18 remodel.cxx11threadmpiserialization.linuxgccrelease @missing_resi_loop
and my flag file
-loops
-in:file:s FER-LLG2.pdb
-remodel:blueprint ferllgb.remodel
-run:chain B
-remodel:num_trajectory 1
-remodel:quick_and_dirty
-out:path:all output_files
-out:file:scorefile all_missing_loops.sc
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