Dear Rosetta users:
I ran a full structure prediction on the Robetta web server and obtained useful results. Now I would like to run Rosetta locally (because I want to control the fragment libraries).
I installed Rosetta3.5 and did a test run, but the locally-generated structures are quite different than those that I obtained from the Robetta web server (the Robetta results are much better). I presume that this is because I have not configured the local Rosetta run very well.
What I would really like to do is to obtain a copy of the commands that were sent to Rosetta from the Robetta web server so that I can repeat the structure determination locally and get the same results that I got from the Robetta web server. Is that possible?