I'm a new user of Rosetta software and I believe I have the usual questions to ask, but as long as I've searched (manuals and web) I couldn't find satisfying answers.
I have generated 30000 structures with the abInitio protocol in parallel, 100 structures each run taking care of the seed number. Afterwards I've combined the 300 silent outputs with the combine protocol.
then I've clustered all these decoys with the cluster protocol. The results after the clustering were 150 pdbs called c.*.0.pdb which I understood as the best scored structure from each cluster.
So far so good, but at this point I'd like to have some more information, if that's possible, about the clusters like the other members of the clusters, in order to get information about the cluster size and to compare the structures of the same cluster and cross-cluster and the score.
How can I extract those information?
Thank you for your attention.
nb: I didn't feel like attaching any file because I think is more a methodological issue, but I'll be more than happy to provide the files you think will help.