After clustering I created silent files for every cluster with the contents being the info from every structure in that cluster. I then went to score these silent files and output another silent file with the score results (one silent file for every cluster with the score values in it). My problem is that the silent file produced from running the score function contains not only the scores but also the info from the .pdbs for each structure. I would like this file to have only the score values for the structures in each cluster. Is there an easy way to accomplish this?
Here is the command I used to score the structures for each cluster.
score_jd2.linuxgccrelease -database /opt/rosetta-3.2.1/rosetta_database/ -in:file:silent c.1.silent -in:file:fullatom -out:file:silent c.1.score.silent
Thanks for any help.