You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
| Topic / Topic starter | Replies | Views |
Last post |
|
|---|---|---|---|---|
|
Sticky:
FAQ by admin » Mon, 2010-08-30 04:18 |
0 |
17,017 |
by admin Fri, 2015-09-04 16:17 |
|
|
RosettaLigand - strange score behavior by Gerdes » Mon, 2014-02-03 02:24 |
6 |
6,633 |
by Gerdes Fri, 2014-02-07 06:48 |
|
|
rosetta_2013wk52: make_fragments.pl failed by fred » Thu, 2014-01-30 12:41 |
6 |
8,326 |
by rmoretti Fri, 2014-02-07 08:01 |
|
|
RNA structure prediction by emaghdam » Sat, 2014-02-08 01:30 |
4 |
5,579 |
by rmoretti Mon, 2014-02-24 09:12 |
|
|
ddg monomer vs pmut scan by dave » Tue, 2014-03-04 10:18 |
3 |
4,304 |
by smlewis Fri, 2014-03-07 13:02 |
|
|
InterfaceAnalyzer problem by almeida » Mon, 2014-03-03 14:56 |
3 |
4,775 |
by smlewis Fri, 2014-03-07 14:09 |
|
|
ORBITAL records in self generated .params (ligands) by ast » Thu, 2014-03-06 07:22 |
9 |
8,780 |
by ast Thu, 2014-03-13 07:17 |
|
|
Options for Enzdes RosettaScripts by joeg » Wed, 2014-03-12 09:28 |
1 |
2,827 |
by rmoretti Thu, 2014-03-13 08:04 |
|
|
cluster.mpi.linuxgccrelease failed by fred » Mon, 2014-02-24 12:11 |
3 |
7,886 |
by fred Thu, 2014-03-27 11:29 |
|
|
score_jd2.mpi.linuxgccrelease failed by fred » Wed, 2014-03-26 13:54 |
2 |
5,262 |
by fred Tue, 2014-04-01 08:24 |
|
|
matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302 by siciliu » Fri, 2014-03-21 17:51 |
5 |
6,018 |
by siciliu Thu, 2014-04-10 09:50 |
|
|
regarding extracting silent file - renamed tag by shrutikhare » Thu, 2014-04-17 01:19 |
2 |
2,631 |
by shrutikhare Fri, 2014-04-18 23:11 |
|
|
Fragment files for membrane_abinitio application by sumukh21 » Sun, 2011-02-13 20:34 |
7 |
6,562 |
by yarovoy Mon, 2014-04-21 06:47 |
|
|
sam.predict-2nd for make_fragments.pl script by sumukh21 » Thu, 2011-02-17 12:29 |
3 |
4,617 |
by fukamitka Mon, 2014-04-21 06:47 |
|
|
Fragment files for membrane_abinitio application by sumukh21 » Tue, 2011-02-15 17:23 |
2 |
3,376 |
by sumukh21 Mon, 2014-04-21 06:47 |
|
|
How to estimate the effect of a mutation on the binding energy? by ltrabuco » Tue, 2011-02-15 08:02 |
4 |
5,246 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
demo of molecular replacement with rosetta (mr_rosetta) by wenchangyu2008 » Sun, 2011-03-20 05:23 |
8 |
10,828 |
by astrofunk12 Mon, 2014-04-21 06:47 |
|
|
example scripts for comparative modeling by fglaser » Sun, 2011-02-27 21:50 |
2 |
3,492 |
by maxebert Mon, 2014-04-21 06:47 |
|
|
Filtering while clustering by David Hoover » Wed, 2011-03-30 07:03 |
1 |
2,600 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
modeling phosphorylated residue by rosetter » Fri, 2011-03-18 08:13 |
7 |
8,259 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
error mesages from RosettaDock by AlanZhao » Mon, 2011-03-21 11:42 |
1 |
2,508 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
the meaning of total_score in docking by libai2098 » Mon, 2011-03-21 05:46 |
2 |
4,452 |
by libai2098 Mon, 2014-04-21 06:47 |
|
|
-score_app:linmin flag not working by fglaser » Tue, 2011-03-01 06:04 |
5 |
5,280 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
some application troubles when using resfile flag by chenchaozhao » Tue, 2011-04-05 00:05 |
24 |
25,705 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
RosettaAntibody by mpendleton » Mon, 2011-04-04 10:27 |
3 |
4,839 |
by jianqing Mon, 2014-04-21 06:47 |
|
|
placing a constraint during structure prediction by cbala » Thu, 2011-04-07 08:54 |
1 |
3,129 |
by ic3reyes Mon, 2014-04-21 06:47 |
|
|
Destination of score.fsc file by anirbanzz » Wed, 2011-04-20 23:30 |
1 |
2,767 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Dimer of dimers by smiruthi » Fri, 2011-04-15 10:41 |
4 |
6,840 |
by IAndre Mon, 2014-04-21 06:47 |
|
|
membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template? by fglaser » Thu, 2011-04-07 07:57 |
0 |
2,205 |
by fglaser Mon, 2014-04-21 06:47 |
|
|
flexpep docking problem by michael_luntan » Mon, 2011-04-18 17:15 |
5 |
5,494 |
by michael_luntan Mon, 2014-04-21 06:47 |
|
|
rna structure prediction by cbala » Thu, 2011-04-14 07:42 |
5 |
5,628 |
by mkoohim Mon, 2014-04-21 06:47 |
|
|
protein-protein docking by cbala » Mon, 2011-04-18 09:15 |
1 |
2,544 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Help with enzyme design by lzx32 » Fri, 2011-04-08 22:29 |
6 |
6,239 |
by lzx32 Mon, 2014-04-21 06:47 |
|
|
flexpep docking, select the decoy to do the further docking, questions by michael_luntan » Fri, 2011-04-22 04:43 |
2 |
3,414 |
by michael_luntan Mon, 2014-04-21 06:47 |
|
|
problem when exact pdb from silent file by wenchangyu2008 » Mon, 2011-04-18 00:42 |
1 |
3,083 |
by wenchangyu2008 Mon, 2014-04-21 06:47 |
|
|
Rosetta-Holes Scoring Function by kroberts » Fri, 2011-05-13 14:05 |
11 |
14,264 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Problem with symmetric docking by saxen » Fri, 2011-04-29 15:15 |
3 |
3,966 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
kinematic loop modeling multiple input: possible? by a_s_a » Thu, 2011-05-12 09:33 |
2 |
3,240 |
by a_s_a Mon, 2014-04-21 06:47 |
|
|
Using Rosetta Docking for nucleic acids by Adrien Guilhot » Thu, 2011-04-28 06:16 |
3 |
4,954 |
by Adrien Guilhot Mon, 2014-04-21 06:47 |
|
|
ab inito memberane(error in alignblast.pl) by kingljy » Tue, 2011-05-03 23:41 |
6 |
6,839 |
by karthishanmugam Mon, 2014-04-21 06:47 |
|
|
Problem readin .ccp4 map file by jljbbc » Tue, 2011-05-03 11:29 |
4 |
5,544 |
by jljbbc Mon, 2014-04-21 06:47 |
|
|
Ligand docking and protein design of an internal pocket in a protein with a cofactor by oerbilgin » Mon, 2011-06-20 13:55 |
2 |
4,696 |
by frichter Mon, 2014-04-21 06:47 |
|
|
FlexPepDocking with GDP-bound protein by LI » Sun, 2011-06-12 20:02 |
3 |
4,603 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
rosetta protein protein docking start up by vk » Fri, 2011-06-24 09:01 |
5 |
6,755 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How to add constrains to FlexPepDocking? by MajorID » Thu, 2011-06-02 11:00 |
2 |
3,161 |
by MajorID Mon, 2014-04-21 06:47 |
|
|
cluster error by sudhar » Fri, 2011-06-17 05:58 |
1 |
2,879 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Missing common atom definitions in constraints by ic3reyes » Sat, 2011-06-11 13:09 |
3 |
4,987 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Modeling of side-chains onto membrane ab initio cluster? by akfried » Thu, 2011-06-23 04:03 |
3 |
3,918 |
by nkemjika Mon, 2014-04-21 06:47 |
|
|
flexpep docking problem-----How to do with phosphorylation peptide? by MajorID » Thu, 2011-06-02 00:37 |
4 |
6,122 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Why do non proten ligands get a very high score in kinematic loop modeling/ in general? by a_s_a » Wed, 2011-06-15 00:03 |
8 |
7,614 |
by a_s_a Mon, 2014-04-21 06:47 |
|
|
Molecular Replacement with multiple chains by brspurri » Fri, 2011-06-10 08:25 |
0 |
2,111 |
by brspurri Mon, 2014-04-21 06:47 |
|
|
DNA Interface design by zadie1118 » Wed, 2011-06-22 07:05 |
0 |
2,116 |
by zadie1118 Mon, 2014-04-21 06:47 |
|
|
protein structure prediction using relax -- high-powered jobs by rfieldhouse » Mon, 2011-05-30 18:29 |
7 |
7,450 |
by dimaio Mon, 2014-04-21 06:47 |
|
|
score to use for picking top docking solutions? by sudhar » Tue, 2011-06-14 06:47 |
3 |
5,695 |
by weitzner Mon, 2014-04-21 06:47 |
|
|
Floppytail modelling by felipet » Fri, 2011-06-24 09:23 |
2 |
3,656 |
by felipet Mon, 2014-04-21 06:47 |
|
|
cluster,how to get the statistic data by MajorID » Wed, 2011-06-08 09:20 |
0 |
1,912 |
by MajorID Mon, 2014-04-21 06:47 |
|
|
Unable to run Rosetta LoopModeling application by BDBorrillo » Tue, 2011-07-19 14:06 |
2 |
5,318 |
by BDBorrillo Mon, 2014-04-21 06:47 |
|
|
Compiling Rosetta 3.3 on Linux Mint by proteinproteindock » Thu, 2011-09-01 16:05 |
2 |
3,592 |
by proteinproteindock Mon, 2014-04-21 06:47 |
|
|
relax with resfile by gw » Fri, 2011-08-05 10:57 |
3 |
5,963 |
by nannemdp Mon, 2014-04-21 06:47 |
|
|
flexpepdock flag "-packing:unboundrot" by gw » Mon, 2011-07-11 12:23 |
2 |
3,966 |
by Ora Schueler-Furman Mon, 2014-04-21 06:47 |
|
|
Problems with Ligand Docking by saxen » Fri, 2011-08-19 00:19 |
8 |
8,506 |
by glemmon Mon, 2014-04-21 06:47 |
|
|
score_jd2.linuxgccrelease documentation by fglaser » Mon, 2011-08-01 04:08 |
1 |
3,878 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How to define pi-pi stacking in cst file? by lzx32 » Mon, 2011-07-04 23:47 |
6 |
7,877 |
by lzx32 Mon, 2014-04-21 06:47 |
|
|
partial ab initio modeling by fred » Wed, 2011-08-17 14:14 |
3 |
4,052 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Fragment Files by nkemjika » Fri, 2011-07-22 15:11 |
1 |
2,996 |
by dgront Mon, 2014-04-21 06:47 |
|
|
ERROR: no fragment to compute secondary structure by byin » Sun, 2011-08-07 23:55 |
3 |
4,389 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-' by AG88 » Thu, 2011-11-03 01:25 |
4 |
7,506 |
by weitzner Mon, 2014-04-21 06:47 |
|
|
Fragments for long sequence by exchhattu » Tue, 2011-10-04 01:51 |
2 |
3,135 |
by exchhattu Mon, 2014-04-21 06:47 |
|
|
prepack_example.sh error message by sacch » Sun, 2011-10-23 23:22 |
2 |
3,202 |
by sacch Mon, 2014-04-21 06:47 |
|
|
[SOLVED] swamped memory by fred » Fri, 2011-09-16 08:19 |
13 |
11,714 |
by fred Mon, 2014-04-21 06:47 |
|
|
Enzyme design with variable CST blocks possible? by petrikigor » Thu, 2011-10-06 11:24 |
6 |
6,933 |
by petrikigor Mon, 2014-04-21 06:47 |
|
|
InterfaceAnalyzer -resfile by gw » Wed, 2011-11-02 16:01 |
1 |
2,817 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
AbinitioRelax Disulfide Bonds are not being retained by brspurri » Wed, 2011-09-28 13:55 |
1 |
4,324 |
by parmef Mon, 2014-04-21 06:47 |
|
|
Error while running Enzyme Design by saxen » Fri, 2011-10-21 15:46 |
11 |
10,596 |
by akpole Mon, 2014-04-21 06:47 |
|
|
fragment_picker with fasta only by gw » Tue, 2011-11-15 13:20 |
3 |
4,276 |
by gw Mon, 2014-04-21 06:47 |
|
|
RosettaRemodel by gw » Wed, 2011-09-14 13:24 |
2 |
3,509 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
ddg_monomer.mpi by gw » Thu, 2011-10-27 16:45 |
3 |
4,027 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
minimize_with_cst problems (ddg_monomer) by alexn » Tue, 2011-09-20 13:46 |
2 |
3,462 |
by alexn Mon, 2014-04-21 06:47 |
|
|
Structure determination combining X-ray diffraction data and NMR chemical shift by MajorID » Mon, 2011-10-17 19:55 |
2 |
3,694 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Error with recognizing rotamer library atoms by oerbilgin » Fri, 2011-11-04 15:23 |
19 |
27,954 |
by oerbilgin Mon, 2014-04-21 06:47 |
|
|
Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved] by loreseeker » Wed, 2011-09-14 08:13 |
2 |
3,542 |
by loreseeker Mon, 2014-04-21 06:47 |
|
|
[SOLVED]core.io.silent: [ WARNING ] ... by fred » Wed, 2011-10-05 07:38 |
8 |
7,703 |
by fred Mon, 2014-04-21 06:47 |
|
|
behind threading protocol by fred » Tue, 2011-10-25 05:37 |
0 |
2,167 |
by fred Mon, 2014-04-21 06:47 |
|
|
Abrelax - Dunbrack02.lib.bin missing by omirus » Sun, 2011-09-18 06:30 |
3 |
4,781 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Standalone alanine scanning protocol by exchhattu » Thu, 2011-10-13 19:40 |
1 |
5,355 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Runnig Abinitio & score app by Gaurav_kumar » Wed, 2011-11-23 20:45 |
9 |
11,347 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Run AbinitioRelax (rosetta 3.3) on cluster by grisha » Mon, 2011-12-12 14:20 |
18 |
17,074 |
by grisha Mon, 2014-04-21 06:47 |
|
|
loop modeling during enzyme design? by lzx32 » Wed, 2011-11-16 00:30 |
6 |
5,687 |
by lzx32 Mon, 2014-04-21 06:47 |
|
|
problems in InterfaceAnalyzer analysis by chenchaozhao » Fri, 2011-12-02 23:36 |
9 |
8,304 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly' by smiruthi » Mon, 2011-12-12 14:27 |
1 |
2,719 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Don't know how to extract scores from a RNA de novo silent file. by Basantab » Wed, 2011-11-23 17:27 |
10 |
9,643 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
RMS determination using Rosetta 3.3 by adraney » Thu, 2011-12-08 12:44 |
2 |
3,213 |
by mark.wilson Mon, 2014-04-21 06:47 |
|
|
proline patching problem by xun » Tue, 2012-01-03 11:15 |
3 |
3,814 |
by xun Mon, 2014-04-21 06:47 |
|
|
Representing Cross-linked nitrogens by jjlee2 » Sat, 2011-11-26 18:42 |
1 |
2,389 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
rosetta scores for mutated structures by harshkhare » Wed, 2011-11-23 09:30 |
1 |
2,729 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Idealize in Rosetta 3.3 by jadolfbr » Tue, 2011-12-06 11:59 |
2 |
3,115 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
How do you use two patches simulataneously with ab initio folding? by smiruthi » Wed, 2011-12-21 15:24 |
5 |
5,165 |
by wangyr Mon, 2014-04-21 06:47 |
|
|
limit_cluster_size default value by sacch » Thu, 2011-11-24 17:57 |
2 |
2,818 |
by sacch Mon, 2014-04-21 06:47 |
|
|
cluster.mpi running in MPI mode? by sacch » Fri, 2011-11-18 23:30 |
2 |
4,339 |
by sacch Mon, 2014-04-21 06:47 |
|
|
ddg with ligands by bhaines1 » Mon, 2011-12-05 14:32 |
4 |
5,299 |
by rmoretti Mon, 2014-04-21 06:47 |
Log in to post new content in the forum.
