You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
| Topic / Topic starter |
Replies |
Views | Last post | |
|---|---|---|---|---|
|
Conformers in EnzDes by JorickF » Fri, 2015-03-06 04:41 |
5 |
7,296 |
by rmoretti Tue, 2015-03-31 08:56 |
|
|
How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"? by lanselibai » Mon, 2014-10-13 10:26 |
5 |
5,692 |
by lanselibai Wed, 2014-10-15 03:52 |
|
|
Does linker modeling exist? by aroop » Wed, 2012-02-22 07:34 |
5 |
5,447 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Rna Denovo by helderveras » Wed, 2020-05-06 08:40 |
5 |
3,164 |
by everyday847 Wed, 2020-05-20 08:52 |
|
|
RosettaVIP: ERROR: seqpos <= size() by Anonymous » Thu, 2012-07-26 07:30 |
5 |
6,695 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
RosettaCM Tutorials by smathersc » Wed, 2017-01-11 15:59 |
5 |
4,914 |
by rmoretti Thu, 2017-01-19 09:11 |
|
|
relax.linuxgccrelease in multiple processors by jpfuenzalidawx » Thu, 2021-01-14 14:07 |
5 |
3,111 |
by jadolfbr Fri, 2021-01-15 08:06 |
|
|
how to find help informations on rosetta_scripts in rosetta3.10 by xinmiaohe » Mon, 2019-08-26 14:48 |
5 |
3,272 |
by xinmiaohe Tue, 2019-08-27 08:37 |
|
|
rosetta protein protein docking start up by vk » Fri, 2011-06-24 09:01 |
5 |
7,182 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Symmetric Minimization by aroop » Mon, 2012-12-17 11:45 |
5 |
4,784 |
by aroop Mon, 2014-04-21 06:47 |
|
|
ddg dG_separate by gw » Wed, 2012-08-22 11:25 |
5 |
6,301 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Error during single state design by sujigeorge1979 » Sat, 2020-01-18 00:37 |
5 |
5,365 |
by rmoretti Thu, 2020-01-30 15:42 |
|
|
extract silent error - tag mismatch by shrutikhare » Thu, 2014-04-03 00:13 |
5 |
7,101 |
by rmoretti Mon, 2014-04-21 10:47 |
|
|
Error with the mpi version of simple_cycpep_predict by Florent Langenfeld » Wed, 2020-02-05 05:16 |
5 |
3,335 |
by vmulligan Fri, 2020-04-10 02:54 |
|
|
Rosetta RNA denovo huge memory usage (probable memory leak) by cdegut » Mon, 2017-10-30 16:41 |
5 |
4,417 |
by cdegut Fri, 2017-11-03 05:50 |
|
|
Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress) by Danielsebas » Mon, 2019-09-23 03:24 |
5 |
3,312 |
by smlewis Mon, 2019-09-23 11:42 |
|
|
Snugdock_input by luicui » Wed, 2017-01-18 16:48 |
5 |
4,469 |
by smlewis Fri, 2017-01-20 08:14 |
|
|
Ligand Docking with Rosetta Scripts memory problem by Swillard » Thu, 2017-08-17 14:59 |
5 |
5,007 |
by rmoretti Mon, 2018-11-12 14:31 |
|
|
RosettaCM -weights, fragments and relax by jsv » Tue, 2017-05-09 10:20 |
5 |
5,135 |
by rmoretti Thu, 2017-06-01 08:52 |
|
|
cyclization_type flag in simple_cycpep_predict by Florent Langenfeld » Thu, 2018-01-04 09:22 |
5 |
4,836 |
by Florent Langenfeld Tue, 2018-03-27 11:44 |
|
|
flexpep docking problem by michael_luntan » Mon, 2011-04-18 17:15 |
5 |
5,814 |
by michael_luntan Mon, 2014-04-21 06:47 |
|
|
Cartesian-space refinement by sjyang7 » Wed, 2017-05-31 19:34 |
5 |
5,798 |
by sjyang7 Sat, 2017-06-03 06:09 |
|
|
Enzdes: increase weight of energy term for steric clashes with ligand by eyong123 » Wed, 2015-03-25 09:12 |
5 |
6,214 |
by rmoretti Fri, 2015-04-24 12:02 |
|
|
RosettaLigand: How to score native pose in protein-ligand docking experiment? by Ryhon Wang » Tue, 2015-11-10 01:30 |
5 |
5,906 |
by Ryhon Wang Mon, 2016-01-04 19:59 |
|
|
Rosetta ScriptsFeatures Reporter issue by David Weis » Sun, 2017-03-12 08:19 |
5 |
4,819 |
by David Weis Mon, 2017-03-13 10:59 |
|
|
Memory Leak: Relax Density MPI RAM overusage kills process by mmfarrugia » Sun, 2023-12-31 12:02 |
5 |
621 |
by mmfarrugia Fri, 2024-01-12 10:35 |
|
|
ab initio protein prediction using homologs by justin » Mon, 2012-02-13 07:52 |
5 |
5,885 |
by justin Mon, 2014-04-21 06:47 |
|
|
domain:domain fusion by felipet » Thu, 2017-06-15 13:13 |
5 |
5,629 |
by felipet Fri, 2017-06-16 11:42 |
|
|
Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans? by ccottrell » Tue, 2020-05-05 20:30 |
5 |
3,077 |
by jadolfbr Wed, 2020-05-06 11:37 |
|
|
RosettaScripts LinkResidues by Yero » Fri, 2019-05-17 05:26 |
5 |
4,296 |
by Yero Thu, 2019-07-18 01:39 |
|
|
Parse error while reading in XML file in ROSETTA Scripts by rweisse » Fri, 2014-08-29 03:24 |
5 |
9,606 |
by a-eatemadi@razi... Sun, 2017-08-06 03:49 |
|
|
Rosetta dock irmsd by Pernille » Sun, 2015-04-26 13:51 |
5 |
7,111 |
by rmoretti Mon, 2015-10-12 15:10 |
|
|
snugdock(sequence position requested was greater than the number of residues in the pose) by lei » Thu, 2023-01-12 01:40 |
5 |
2,702 |
by lei Fri, 2023-01-20 08:11 |
|
|
Rosetta residue design for DNA binding by deltag » Wed, 2012-12-12 11:35 |
5 |
9,260 |
by deltag Mon, 2014-04-21 06:47 |
|
|
extract_pdb application parse error with silent file by staciekim » Tue, 2017-08-22 12:39 |
5 |
5,909 |
by rmoretti Thu, 2017-08-24 08:19 |
|
|
rna structure prediction by cbala » Thu, 2011-04-14 07:42 |
5 |
6,000 |
by mkoohim Mon, 2014-04-21 06:47 |
|
|
Error with -patch_selectors by subha » Tue, 2017-06-06 14:40 |
4 |
3,859 |
by subha Fri, 2017-06-09 15:42 |
|
|
homology modelling with DNA by zadie1118 » Fri, 2012-09-28 06:35 |
4 |
5,864 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Loop modelling before peptide docking by wsgosal » Tue, 2013-10-01 07:24 |
4 |
5,364 |
by wsgosal Mon, 2014-04-21 06:48 |
|
|
Options "-out:prefix" didn't work by maruhuang » Tue, 2019-09-10 05:42 |
4 |
2,926 |
by danpf Fri, 2020-02-21 18:32 |
|
|
flexpep docking problem-----How to do with phosphorylation peptide? by MajorID » Thu, 2011-06-02 00:37 |
4 |
6,407 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Error about rifdocking step 15 by ng98 » Sun, 2024-01-21 16:30 |
4 |
531 |
by ng98 Tue, 2024-01-23 17:01 |
|
|
Segmentation Fault during prepacking by Sunyp_IM » Fri, 2020-06-12 11:24 |
4 |
3,358 |
by Sunyp_IM Thu, 2020-07-09 18:40 |
|
|
Multiple ligands in enzyme design application by yogeshkd » Mon, 2013-02-11 10:13 |
4 |
5,419 |
by yogeshkd Mon, 2014-04-21 06:47 |
|
|
Pepspec Errors running 3.4 by rrphenix » Tue, 2013-05-28 12:08 |
4 |
4,481 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
"Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application by xfliu » Thu, 2012-06-21 09:07 |
4 |
5,226 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
"OSError: [Errno 2]” in “clustering.py” by lanselibai » Sat, 2014-10-11 14:30 |
4 |
7,534 |
by lanselibai Fri, 2014-10-17 05:10 |
|
|
Template/Input length mismatch error during RosettaCM by marinok » Mon, 2020-05-04 13:12 |
4 |
2,833 |
by marinok Mon, 2020-05-11 12:48 |
|
|
make_rot_lib issue by jarek » Thu, 2013-04-11 08:21 |
4 |
5,033 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Clustering issue by Loki01 » Thu, 2018-03-29 10:16 |
4 |
3,473 |
by Loki01 Thu, 2018-04-12 08:28 |
|
|
ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator> by DGR95 » Fri, 2021-04-16 19:26 |
4 |
2,415 |
by DGR95 Wed, 2021-04-28 16:13 |
|
|
rosetta3.4 fragment file problem by David Hoover » Wed, 2012-05-16 14:42 |
4 |
4,314 |
by dgront Mon, 2014-04-21 06:47 |
|
|
Abinitio.relax problem on centos by krlitros87 » Wed, 2014-09-24 11:27 |
4 |
5,920 |
by jadolfbr Tue, 2014-10-07 16:05 |
|
|
ReplicaDock2.0 demo fails with MPIFileBufJobDistributor: (1) [ ERROR ] by erpannec » Tue, 2022-08-09 05:42 |
4 |
2,027 |
by erpannec Thu, 2022-09-15 05:17 |
|
|
RosettaDesign error with Option file open failed by xingqing326 » Sun, 2020-04-19 01:56 |
4 |
4,096 |
by xingqing326 Tue, 2020-04-21 19:11 |
|
|
Changing scoring function for fixbb protocol by mdyini » Sat, 2012-07-07 18:43 |
4 |
4,323 |
by mdyini Mon, 2014-04-21 06:47 |
|
|
Rebuilding the structure from unknown residues by sushreet » Mon, 2016-06-27 09:32 |
4 |
5,364 |
by rmoretti Tue, 2016-07-12 09:35 |
|
|
extract_pdbs fails to open silent file when -auto_setup_metals enabled by attesor » Thu, 2015-01-15 03:22 |
4 |
5,114 |
by attesor Tue, 2015-01-27 02:20 |
|
|
Score Functions for Ligand-protein Docking by ziruiw » Sun, 2021-04-25 13:41 |
4 |
3,350 |
by ziruiw Fri, 2021-04-30 12:01 |
|
|
Docking to TM protein plus lipid bilayer by renedominik » Tue, 2019-03-12 06:58 |
4 |
3,760 |
by elpipasp Thu, 2023-10-19 04:37 |
|
|
rosetta backrub by ladimafakher » Thu, 2018-10-04 08:01 |
4 |
3,540 |
by ladimafakher Thu, 2018-11-01 03:47 |
|
|
ligand_docking_analysis by Prasanth Kumar » Thu, 2013-05-09 23:51 |
4 |
5,155 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
comparative modelling and broker by felipet » Tue, 2013-02-05 08:33 |
4 |
4,411 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Segmentation Fault by ajaniharesh » Fri, 2019-03-29 11:21 |
4 |
6,328 |
by ajaniharesh Thu, 2019-04-04 07:07 |
|
|
ddg with ligands by bhaines1 » Mon, 2011-12-05 14:32 |
4 |
5,676 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Problem readin .ccp4 map file by jljbbc » Tue, 2011-05-03 11:29 |
4 |
5,868 |
by jljbbc Mon, 2014-04-21 06:47 |
|
|
Warning messages in Interface analyzer output by Pernille » Wed, 2015-03-25 00:53 |
4 |
4,666 |
by rmoretti Tue, 2015-03-31 08:20 |
|
|
Coverage of sequence space? by johnnytam100 » Sun, 2019-04-21 23:25 |
4 |
3,721 |
by johnnytam100 Thu, 2019-04-25 19:28 |
|
|
Thread target sequence by duz » Thu, 2021-04-01 10:09 |
4 |
2,310 |
by duz Mon, 2021-05-03 07:50 |
|
|
Sequence design with mixed fixbb-relax protocol by kszczepaniak » Thu, 2013-10-03 08:11 |
4 |
5,739 |
by fede Wed, 2020-09-23 11:24 |
|
|
How to estimate the effect of a mutation on the binding energy? by ltrabuco » Tue, 2011-02-15 08:02 |
4 |
5,587 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-' by AG88 » Thu, 2011-11-03 01:25 |
4 |
7,799 |
by weitzner Mon, 2014-04-21 06:47 |
|
|
Single Strand DNA (ssDNA) 3D structure prediction by mkoohim » Fri, 2012-04-06 00:52 |
4 |
14,720 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Error while reading in silent file by rweisse » Mon, 2015-04-20 00:31 |
4 |
5,642 |
by rmoretti Thu, 2015-04-30 16:46 |
|
|
conformational sampling of multi domain protein by dhirajks » Tue, 2017-07-04 11:20 |
4 |
3,864 |
by jrporter Wed, 2017-07-05 06:30 |
|
|
select_best_unique_ligand_poses - Ligand docking by subha » Thu, 2018-04-19 10:36 |
4 |
3,406 |
by subha Fri, 2018-04-20 12:49 |
|
|
antibody_numbering_converter cannot recognize the IMGT scheme by cryosky » Sat, 2020-02-29 23:12 |
4 |
3,128 |
by jadolfbr Sun, 2020-03-01 14:54 |
|
|
favor native residue in fixBB design by ast » Mon, 2012-12-10 06:00 |
4 |
4,902 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Error when running Remodel with EnzDes constraint file to extend c-terminal by Jeffrey_Chen » Thu, 2017-01-19 06:20 |
4 |
4,445 |
by dfcoelho Tue, 2017-10-17 11:52 |
|
|
Re: Glutamic acid protonation by bharat_46010 » Fri, 2017-02-10 03:08 |
4 |
4,891 |
by rmoretti Mon, 2017-02-20 08:09 |
|
|
Positive scores with SymmDock in helical symmetry by kxiao » Tue, 2014-02-11 07:37 |
4 |
4,763 |
by kxiao Thu, 2014-06-05 08:37 |
|
|
mr_protocols with symmetry and ligand by jhm13c » Mon, 2017-02-27 11:59 |
4 |
3,890 |
by jhm13c Thu, 2017-03-02 12:01 |
|
|
When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error by Martin Floor » Thu, 2020-09-17 06:01 |
4 |
2,886 |
by Martin Floor Tue, 2020-09-22 00:48 |
|
|
ddg_monomer: what is the meaning of "total score" and "score"? by lanselibai » Tue, 2015-01-13 14:49 |
4 |
6,936 |
by rmoretti Thu, 2015-04-16 11:23 |
|
|
RosettaAntibody3 is failing with "Error: no input sequences were specified!" by brspurri » Sun, 2020-08-16 16:16 |
4 |
2,833 |
by brspurri Tue, 2020-08-18 09:57 |
|
|
fa_plane enregy term in scoring weights by ytao » Fri, 2012-11-30 20:25 |
4 |
5,104 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
side chain repacking error by malkeet.singh » Thu, 2017-12-07 04:49 |
4 |
4,199 |
by smlewis Wed, 2017-12-13 09:54 |
|
|
Any backrub expert? by johnnytam100 » Fri, 2019-03-01 01:58 |
4 |
3,669 |
by johnnytam100 Sun, 2019-03-03 23:42 |
|
|
Rosetta antibody- modeling in the presense of an antigen by agctomer » Mon, 2021-02-01 03:19 |
4 |
2,192 |
by nannemdp Wed, 2021-02-03 08:52 |
|
|
relax protein with multi-conformer bound ligand by xfradera » Thu, 2023-01-12 09:10 |
4 |
3,494 |
by rmoretti Mon, 2023-02-06 15:06 |
|
|
Relax with protein+complex by Prasanth Kumar » Wed, 2013-05-08 23:16 |
4 |
5,882 |
by Prasanth Kumar Mon, 2014-04-21 06:47 |
|
|
ddg_monomer and membrane proteins by afmo » Tue, 2014-05-20 02:37 |
4 |
5,822 |
by afmo Thu, 2014-05-22 01:19 |
|
|
simple_cycpep_predict - Design mode - The base name "ARG" was added more than once by almeida85 » Thu, 2022-08-04 02:57 |
4 |
1,829 |
by almeida85 Thu, 2022-08-11 00:58 |
|
|
Backrub Params Files by protos_heis » Tue, 2012-09-18 06:15 |
4 |
5,292 |
by protos_heis Mon, 2014-04-21 06:47 |
|
|
Error while running RosettaLigand by Ryhon Wang » Tue, 2013-07-30 02:51 |
4 |
5,197 |
by Ryhon Wang Mon, 2014-04-21 06:48 |
|
|
Dimer of dimers by smiruthi » Fri, 2011-04-15 10:41 |
4 |
7,189 |
by IAndre Mon, 2014-04-21 06:47 |
|
|
ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used? by lanselibai » Tue, 2015-02-24 02:38 |
4 |
6,442 |
by lanselibai Sun, 2015-03-01 15:00 |
|
|
How to run simulations with non-canonical amino acids? by Denise » Thu, 2017-06-08 07:50 |
4 |
4,235 |
by Denise Thu, 2017-06-15 04:26 |
|
|
rosetta.script segmentation fault by felipet » Wed, 2013-10-02 10:41 |
4 |
6,157 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
|
How to output all iteration structures from ddg_monomer? by cossio » Fri, 2014-12-26 13:40 |
4 |
4,998 |
by cossio Mon, 2015-01-19 07:10 |
Log in to post new content in the forum.
