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Rosetta 3 - Applications
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RNA structure prediction by emaghdam » Sat, 2014-02-08 01:30 |
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5,907 |
by rmoretti Mon, 2014-02-24 09:12 |
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How to specify only design surface residues and loops by RosettaScripts? by johnnytam100 » Sun, 2019-04-07 21:47 |
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3,217 |
by johnnytam100 Wed, 2019-04-10 02:48 |
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Changing scoring function for fixbb protocol by mdyini » Sat, 2012-07-07 18:43 |
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4,303 |
by mdyini Mon, 2014-04-21 06:47 |
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ligand_docking_analysis by Prasanth Kumar » Thu, 2013-05-09 23:51 |
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5,144 |
by rmoretti Mon, 2014-04-21 06:47 |
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Docking Prepack protocol working or not ? by MJG » Mon, 2017-04-03 08:02 |
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4,079 |
by MJG Tue, 2017-04-04 23:59 |
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comparative modelling and broker by felipet » Tue, 2013-02-05 08:33 |
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4,393 |
by smlewis Mon, 2014-04-21 06:47 |
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Antibody modeling by Maryam_tabasinezhad » Fri, 2015-09-04 11:00 |
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5,061 |
by rmoretti Wed, 2015-09-09 12:08 |
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fixbb with symmetry error by Prasanth Kumar » Sun, 2014-01-26 10:56 |
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5,568 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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fixbb algorithm reference? by tylerborrman » Wed, 2015-09-23 10:20 |
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5,374 |
by tylerborrman Mon, 2015-09-28 09:30 |
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Prevention of the negatively charged Nitrogen protonation by coupled_moves by Corvin » Wed, 2020-11-18 02:56 |
4 |
2,670 |
by Corvin Wed, 2020-11-25 02:58 |
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favor native residue in fixBB design by ast » Mon, 2012-12-10 06:00 |
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4,874 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop modelling before peptide docking by wsgosal » Tue, 2013-10-01 07:24 |
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5,352 |
by wsgosal Mon, 2014-04-21 06:48 |
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Options "-out:prefix" didn't work by maruhuang » Tue, 2019-09-10 05:42 |
4 |
2,915 |
by danpf Fri, 2020-02-21 18:32 |
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Error with -patch_selectors by subha » Tue, 2017-06-06 14:40 |
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3,840 |
by subha Fri, 2017-06-09 15:42 |
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Error about rifdocking step 15 by ng98 » Sun, 2024-01-21 16:30 |
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474 |
by ng98 Tue, 2024-01-23 17:01 |
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Segmentation Fault during prepacking by Sunyp_IM » Fri, 2020-06-12 11:24 |
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3,341 |
by Sunyp_IM Thu, 2020-07-09 18:40 |
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Single Strand DNA (ssDNA) 3D structure prediction by mkoohim » Fri, 2012-04-06 00:52 |
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14,689 |
by smlewis Mon, 2014-04-21 06:47 |
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fa_plane enregy term in scoring weights by ytao » Fri, 2012-11-30 20:25 |
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5,077 |
by smlewis Mon, 2014-04-21 06:47 |
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"OSError: [Errno 2]” in “clustering.py” by lanselibai » Sat, 2014-10-11 14:30 |
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7,517 |
by lanselibai Fri, 2014-10-17 05:10 |
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flexpep docking problem-----How to do with phosphorylation peptide? by MajorID » Thu, 2011-06-02 00:37 |
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6,385 |
by rmoretti Mon, 2014-04-21 06:47 |
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Relax with protein+complex by Prasanth Kumar » Wed, 2013-05-08 23:16 |
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5,863 |
by Prasanth Kumar Mon, 2014-04-21 06:47 |
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Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease? by lanselibai » Thu, 2015-01-08 03:23 |
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3,704 |
by lanselibai Tue, 2015-01-13 14:25 |
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Behavior of nstruct by johnnytam100 » Wed, 2019-05-15 22:22 |
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3,282 |
by johnnytam100 Tue, 2019-05-21 20:48 |
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ddg_monomer.mpi by gw » Thu, 2011-10-27 16:45 |
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4,279 |
by smlewis Mon, 2014-04-21 06:47 |
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What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"? by lanselibai » Fri, 2014-10-17 06:06 |
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21,118 |
by rmoretti Fri, 2014-10-17 10:17 |
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Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains by ahonegger » Tue, 2012-04-24 01:34 |
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4,242 |
by ahonegger Mon, 2014-04-21 06:47 |
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RosettaCM by DmitriiN » Sun, 2017-01-22 17:52 |
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3,112 |
by smlewis Mon, 2017-01-23 06:26 |
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Why is proline hydroxylated？ by kwonglynn » Tue, 2013-06-25 02:38 |
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5,302 |
by rmoretti Mon, 2014-04-21 06:48 |
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ddG_monomer by cott1117 » Thu, 2014-06-12 09:53 |
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5,200 |
by rmoretti Wed, 2014-07-02 16:55 |
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Rosetta Ligand Ensemble by malfonsoprieto » Wed, 2021-05-26 10:21 |
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2,039 |
by vizcarra Thu, 2021-08-26 10:16 |
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Ligand dock analysis by sacch » Tue, 2012-05-22 01:20 |
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3,950 |
by glemmon Mon, 2014-04-21 06:47 |
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dihedral_between_bonded_children: atoms are not both my children! by pdbb » Fri, 2013-04-05 06:40 |
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3,403 |
by smlewis Mon, 2014-04-21 06:47 |
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partial ab initio modeling by fred » Wed, 2011-08-17 14:14 |
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4,265 |
by smlewis Mon, 2014-04-21 06:47 |
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Homodimer interface design by petrikigor » Fri, 2012-11-16 10:57 |
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5,072 |
by rmoretti Mon, 2014-04-21 06:47 |
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Running snugdock was crashed by "segmentation fault" by Sunyp_IM » Mon, 2017-08-21 05:03 |
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3,054 |
by rmoretti Tue, 2017-08-22 09:03 |
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relax and movemap by Alison_Yajie » Wed, 2020-05-20 21:27 |
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2,370 |
by smlewis Thu, 2020-05-21 21:05 |
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Filter based on ligand_is_touching by Swillard » Mon, 2017-09-11 19:00 |
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3,081 |
by rmoretti Mon, 2018-11-12 14:35 |
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RNA modeling with step wise Monte Carlo error by szcshr123 » Mon, 2020-12-07 18:08 |
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1,937 |
by everyday847 Wed, 2020-12-09 21:46 |
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pdb2vall by JadAbbass » Mon, 2013-07-08 12:11 |
3 |
3,957 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error when running cluster by aloshbau » Wed, 2013-05-01 20:45 |
3 |
4,748 |
by rmoretti Mon, 2014-04-21 06:47 |
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cluster.mpi.linuxgccrelease failed by fred » Mon, 2014-02-24 12:11 |
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8,153 |
by fred Thu, 2014-03-27 11:29 |
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Perform MPI relax with movemap files by sn » Sun, 2017-03-05 13:18 |
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3,499 |
by sn Mon, 2017-03-06 10:03 |
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clean_pdb not working by Andre Serobian » Thu, 2020-07-23 04:48 |
3 |
2,605 |
by rmoretti Tue, 2020-07-28 08:24 |
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Homology Modelling with cofactors by Derek Smith » Thu, 2015-07-09 08:24 |
3 |
4,643 |
by Derek Smith Wed, 2016-02-03 05:47 |
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how to make "static" built binaries use multiple cpus like "mpi"? by Danielsebas » Wed, 2019-09-18 06:41 |
3 |
2,688 |
by rmoretti Wed, 2019-09-18 10:21 |
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HBNet and RosettaScripts by protos_heis » Tue, 2014-08-05 06:05 |
3 |
4,305 |
by protos_heis Tue, 2014-08-05 12:47 |
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Can't append or prepend with pepspec by danzinho » Tue, 2015-03-31 01:19 |
3 |
3,979 |
by dswhit Tue, 2015-04-21 10:14 |
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deltaG calculations by Prasanth Kumar » Wed, 2013-05-15 07:06 |
3 |
6,499 |
by rmoretti Mon, 2014-04-21 06:47 |
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Different scoring applications (score vs score_aln vs score_jd2, etc.)? by cossio » Fri, 2014-12-26 07:19 |
3 |
4,796 |
by Patrícia Antunes Fri, 2023-01-20 11:55 |
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Error about rifdocking step 12 by ng98 » Mon, 2024-01-08 16:27 |
3 |
494 |
by ng98 Tue, 2024-01-09 23:42 |
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Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM by ajkal » Fri, 2017-04-14 08:44 |
3 |
3,637 |
by rmoretti Thu, 2017-04-20 13:59 |
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Unable to locate the "compute_ddg.py" file and running the RosettaMP protocol by Sajjad » Mon, 2022-11-28 14:09 |
3 |
5,056 |
by Sajjad Wed, 2022-11-30 11:50 |
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make fragment by zadie1118 » Thu, 2012-08-30 07:45 |
3 |
5,272 |
by smlewis Mon, 2014-04-21 06:47 |
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ab initio by malkeet.singh » Thu, 2018-05-10 05:34 |
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3,420 |
by malkeet.singh Mon, 2018-05-21 04:26 |
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folding ectodomain in membrane ab initio by freedman » Mon, 2015-05-25 21:09 |
3 |
4,022 |
by rmoretti Fri, 2015-06-19 13:53 |
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Up to date Vall database by JadAbbass » Sat, 2013-06-29 10:35 |
3 |
5,959 |
by rmoretti Tue, 2017-06-20 09:02 |
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The error of InterfaceAnalyzer by asbelx » Thu, 2017-12-21 19:04 |
3 |
4,124 |
by smlewis Sat, 2017-12-23 15:56 |
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proline patching problem by xun » Tue, 2012-01-03 11:15 |
3 |
4,036 |
by xun Mon, 2014-04-21 06:47 |
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comparative modeling of protein-ligand complex by tevang » Mon, 2013-09-09 09:06 |
3 |
4,436 |
by rmoretti Mon, 2014-04-21 06:48 |
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How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI by kingljy » Sun, 2017-09-24 18:37 |
3 |
3,864 |
by rmoretti Tue, 2017-10-10 09:58 |
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"Install_dependencies.pl" gives "Aborted" when downloading "nr" database? by Danielsebas » Sat, 2019-09-14 08:53 |
3 |
2,332 |
by danpf Mon, 2019-09-16 09:51 |
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Lammps or RosettaSurface by StevPChem » Fri, 2016-06-10 10:13 |
3 |
4,007 |
by Anpu Tue, 2018-09-25 18:53 |
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Extract PDB structures from database by cossio » Mon, 2018-01-29 09:30 |
3 |
3,929 |
by rmoretti Fri, 2018-11-23 11:23 |
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Syntax for the alignment file in "minirosetta comparative modeling" by lanselibai » Thu, 2014-10-16 15:29 |
3 |
4,641 |
by lanselibai Thu, 2014-10-23 03:26 |
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Constraints in RosettaCM by kbuhr » Fri, 2015-07-31 06:55 |
3 |
4,258 |
by kbuhr Mon, 2016-03-28 01:08 |
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Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex by benhardy » Mon, 2020-06-15 09:33 |
3 |
2,226 |
by benhardy Fri, 2020-06-19 07:55 |
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score to use for picking top docking solutions? by sudhar » Tue, 2011-06-14 06:47 |
3 |
5,982 |
by weitzner Mon, 2014-04-21 06:47 |
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Does it make sense if I do backrub after sequence design? by johnnytam100 » Thu, 2019-08-15 05:15 |
3 |
2,377 |
by johnnytam100 Fri, 2019-08-16 00:20 |
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RosettaCM or FastRelax? by Tianyang89 » Wed, 2020-09-23 07:46 |
3 |
2,218 |
by danpf Thu, 2020-09-24 13:44 |
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Missing CS-HM-Rosetta Binary files by Marius1987 » Wed, 2016-02-10 05:52 |
3 |
3,967 |
by Marius1987 Mon, 2016-03-14 04:34 |
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Threading a sequence onto a template with ligands/metal ions included by ajkal » Wed, 2017-04-19 11:53 |
3 |
3,689 |
by ahmadkhalifa Sun, 2019-03-31 23:27 |
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analysis of clustering by loris.moretti » Thu, 2012-04-19 02:52 |
3 |
7,157 |
by rmoretti Mon, 2014-04-21 06:47 |
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scoring input pdbs as the same as docking score by hamedkhakzad » Fri, 2016-07-01 07:15 |
3 |
3,748 |
by rmoretti Tue, 2016-07-12 09:05 |
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KIC with fragments versus Next generation KIC by Loki01 » Fri, 2018-09-07 05:06 |
3 |
2,997 |
by smlewis Mon, 2018-09-10 11:48 |
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Transmembrane helix fold-and-dock? by sarah_b » Tue, 2020-05-12 02:09 |
3 |
2,379 |
by jkleman Tue, 2020-05-19 15:02 |
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RosettaAntibody by mpendleton » Mon, 2011-04-04 10:27 |
3 |
5,079 |
by jianqing Mon, 2014-04-21 06:47 |
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De novo model-building guided by exprimental density data by dee2711453 » Thu, 2016-03-10 17:28 |
3 |
3,681 |
by dee2711453 Fri, 2016-03-11 21:32 |
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The question of ligand docking with constraints by asbelx » Mon, 2018-06-11 09:39 |
3 |
3,282 |
by rmoretti Thu, 2018-06-28 12:58 |
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ERROR: no fragment to compute secondary structure by byin » Sun, 2011-08-07 23:55 |
3 |
4,606 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta make_fragments.pl error? by Danielsebas » Mon, 2019-09-02 07:51 |
3 |
2,493 |
by Danielsebas Thu, 2019-09-05 03:35 |
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parameterizing new residues by chiendarret » Fri, 2012-02-03 22:59 |
3 |
7,789 |
by rmoretti Mon, 2014-04-21 06:47 |
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what does initialize_rigid_body_dofs do? by attesor » Mon, 2015-10-26 05:12 |
3 |
4,023 |
by rmoretti Tue, 2015-11-10 11:35 |
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Abrelax - Dunbrack02.lib.bin missing by omirus » Sun, 2011-09-18 06:30 |
3 |
5,013 |
by smlewis Mon, 2014-04-21 06:47 |
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assymetric dymer modelling with comparative and ab initio by marcia » Mon, 2013-10-14 08:33 |
3 |
4,952 |
by rmoretti Mon, 2014-04-21 06:48 |
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Docking one protein into interface between two other proteins by Cheems » Sat, 2023-05-06 09:49 |
3 |
918 |
by rmoretti Mon, 2023-05-08 13:14 |
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Enzdes constraint file not defined correctly by eyong123 » Fri, 2015-03-27 07:16 |
3 |
3,910 |
by rmoretti Thu, 2015-04-16 10:38 |
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clustering in RosettaRemodel by cheyuk » Wed, 2014-04-23 03:09 |
3 |
4,106 |
by rmoretti Mon, 2014-05-12 08:45 |
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Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file? by lanselibai » Sun, 2014-11-16 10:26 |
3 |
3,920 |
by G Mustafa Thu, 2018-10-18 05:31 |
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How tu use Delta filter's relax_mover by pocin » Sun, 2017-02-19 05:21 |
3 |
3,375 |
by rmoretti Wed, 2017-03-01 13:10 |
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Allow region of protein to move in a certain direction by sn » Wed, 2017-08-23 17:07 |
3 |
3,351 |
by rmoretti Thu, 2017-08-24 11:00 |
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Can only relax one structure at a time by lah435 » Wed, 2012-12-12 01:55 |
3 |
4,000 |
by smlewis Mon, 2014-04-21 06:47 |
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NCAA attached at two points by tsztain » Wed, 2021-06-16 15:20 |
3 |
1,881 |
by matteoferla Sat, 2021-06-19 03:07 |
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FlexPepDock for protein containing multiple chains by Dimitrov » Mon, 2012-10-08 08:31 |
3 |
4,072 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg monomer vs pmut scan by dave » Tue, 2014-03-04 10:18 |
3 |
4,553 |
by smlewis Fri, 2014-03-07 13:02 |
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Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB" by brspurri » Fri, 2017-03-24 10:52 |
3 |
3,821 |
by brspurri Fri, 2017-03-24 11:35 |
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protein protein interaction design by Negarsardar » Wed, 2019-05-15 06:13 |
3 |
3,652 |
by ajasja Wed, 2019-05-15 15:40 |
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pmut_scan does not produce log file by fglaser » Wed, 2013-10-16 07:25 |
3 |
4,466 |
by matteoferla Tue, 2018-10-30 02:54 |
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FlexPepDocking with GDP-bound protein by LI » Sun, 2011-06-12 20:02 |
3 |
4,816 |
by rmoretti Mon, 2014-04-21 06:47 |
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No Space by jrcf » Mon, 2016-01-11 16:18 |
3 |
3,547 |
by jrcf Fri, 2016-02-12 16:42 |
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error with fragment_picker.linuxgccrelease by jiongzhang » Tue, 2012-04-17 09:07 |
3 |
3,627 |
by smlewis Mon, 2014-04-21 06:47 |
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