Hi,
I'm trying to compile rosetta w/ scons by hacking the tools/build/setup_platforms.py, tools/build/basic.settings and tools/build/options.settings.
Dear Rosetta Community,
I have been frequently and successfully using the mpi installed version of rosetta_scripts on my institute high performance computing cluster for the past couple of years. However, I have been running into parallelisation issues of late. The command I use to submit jobs on our cluster using PBS is as follows:
Dear all,
I'm currently in conversation with my PI to get a PC mainly for protein modeling and MD simulations.
One of the software for protein modeling I want to use is rosetta, but unfortunately, I don't know what component I should focus on. RAM/CPU/GPU? all three of them?
I hope someone can help me.
Thanks in advance.
Best regards,
Carlos
ps- I don't have a specific budget yet, so feel free to suggest to me the best configuration you can think of.
Dear Rosetta Users,
I'm new to Rosetta and fall into some errors when tried to test the installation.
I downloaded version 3.13 for Linux system. Then I did the installation according to the tutorial:
I extracted the binary
tar -xvzf rosetta_bin_linux_3.13_bundle.tgz
cd rosetta_bin_linux_2021.16.61629_bundle/main/source
Since I have 12 cores I did and wanted to have MPI version of Rosetta
./scons.py -j 12 mode=release bin extras=mpi
The installation went smooth and I haven't got any error messages.
When I run the py file,it occured:
from rosetta.core.scoring.sasa import SasaCalc
ModuleNotFoundError: No module named 'rosetta.core'
I don't know how to handle it, thanks for every help
Hi all,
I recently had to update my OSX command line tools and in doing so went from clang 12.0 to 13.0
I'm trying to compile Rosetta build 2021.16.61629 and am running into an issue. I was previously able to compile fine with clang v12.0.
As far as I can tell there seems to be an issue with the -rpath option, but that doesn't make much sense. See the fail point and error messages below.
Not sure if this is a zlib issue given the fail point. As far as I can tell I have zlib installed properly.
Hi guys,
I tried to download the most recent release of Rosetta.
However, from what I checked on this website the last one is of September 2021
(Rosetta 2021.38 : https://www.rosettacommons.org/downloads/academic/2021/wk38/).
Is there more recent version?
I guess the weekly relases can be downloaded from somewhere else ?
I have installed the last version of phenix ( phenix-1.20rc2-4400) and then I have tried to compile the last weekly version of rosetta (rosetta_src_2021.07.61567_bundle) with 'rosetta.build_phenix_interface nproc=8'
The machine is Fedora 34 with gcc -v:
Hello,
I have tried to install Rosetta (version 3.11) for use in Phenix (version 1.19.2) on ubuntu 18.04. No problem with Phenix installation and rosetta.build_phenix_interface nproc=24, but when I run rosetta.run_tests, I got the following.
==
Generating 2 models on 1 processors...
DEBUG dumping error message
ERROR: Rosetta exited with status 139
stderr output:
AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS.
Hi,
I have installed pyrosetta and rosetta on my system and when I try to import in my python code it says module not found. I have a BigSur mac computer. Is it because of my system? Can someone help me who has also installed it on bigSur?
Thank you in advance!
Best,
Rashmi
