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Rosetta 3 - Build/Install

Error in building fragment_picker with boost_thread

Submitted by Ken on Thu, 2020-06-04 09:33
Category: 
Compilation

Hi all,

I am new to the whole Rosetta community and am asking for some help in compiling Rosetta3.  I have downloaded build Rosetta3.12 build 2020.08.61146 and tried to compile the thread boost version of fragment pick by using

./scons.py mode=release extras=boost_thread bin/fragment_picker.boost_thread.linuxgccrelease -j 20

The error message that I get is:

**************************************************

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Rosetta 3 - Build/Install

Error with compilation of Rosetta_3.12 in a large computational cluster

Submitted by Sunyp_IM on Tue, 2020-05-26 19:31
Category: 
Compilation

Dear all,

I am trying to compilation of Rosetta_scr_3.12 (using gcc-7 as the compiler) in  large computational cluster with the following command:

    ./scons.py bin mode=release extras=mpi -j 24

 

I get the following error message:

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Rosetta 3 - Build/Install

Rosetta compilation error with gcc-10

Submitted by Sunyp_IM on Sun, 2020-05-24 07:33
Category: 
Compilation

Dear all,

I am trying to compile ROSETTA 3.12 on Red Hat Enterprise Linux Server release 6.5. I install the gcc (GCC) 10.1.0, and run the follow command

     ./scons.py bin mode=release -j 60

I get some error information like:

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Rosetta 3 - Build/Install

AbinitioRelax crashed issue

Submitted by Xinhang on Thu, 2020-04-23 08:41
Category: 
Structure prediction

Hello

      I was trying to run AbinitioRelax for structure predictions with attached flags file. The program crashed with the message "Segmentation Fault"

 

##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#

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Rosetta 3 - Build/Install

Error when compiling in Linux Ubuntu VM

Submitted by AbigailD on Fri, 2020-04-10 02:24
Category: 
Compilation

Hi, good day everyone, 

I was trying to compile Rosetta 3 and after running smoothly for two hours it stopped, and I got the following error message: 

g++: internal compiler error: Killed (program cc1plus)

Please submit a full bug report,

with preprocessed source if appropriate.

See <file:///usr/share/doc/gcc-7/README.Bugs> for instructions.

scons: *** [build/src/release/linux/5.3/64/x86/gcc/7/default/core/io/pose_from_sfr/chirality_resolution.os] Error 4

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Rosetta 3 - Build/Install

Running pymol mover on windows 10

Submitted by mgbcn on Sun, 2020-04-05 20:04
Category: 
PyRosetta

I am trying to get pymol mover to work in jupyter notebooks along with pyrosetta. I am working on windows 10 using a linux subsystem.

PyRosetta works great. I have installed pymol via anaconda3 and I have files that are a part of pymol that I can see in my terminal. When I run the following

 

from pyrosetta import PyMOLMover
pymol = PyMOLMover()
pymol.apply(pose)

 

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Rosetta 3 - Build/Install

Is a bash command "wget" a reasonable way for download of Rosetta with binaries?

Submitted by Corvin on Tue, 2020-03-24 01:11
Category: 
Compilation

Dear Sir or Madam,

previously I have always downloaded Rosetta with binaries. But for now the Rosetta package with binary files became too huge (over 17 GB), which makes the Rosetta package download through slow browser (1 Mbps in average and it doesn't depend on a browser) really complicated deal. Other problem, which complicates downloading the Rosetta package, consists in that, what the download process is aborted when laptop screen fades and laptop go to sleep mode.

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Rosetta 3 - Build/Install

How to add my own .cc and .hh file

Submitted by ylwang on Sat, 2020-03-21 10:37
Category: 
Compilation

Hello,i use scons to complie.

Recently,I write some class in .cc and .hh files , when i #include<~path/name.hh>,i find that it did not compile .cc files. I have read sconstruct file but do not know how to add my own file to compile with.

Please give me some help

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Rosetta 3 - Build/Install

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