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Rosetta 3 - General

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Normal topic FastRelax Mover with symmetry, ligand and membrane
by Michele.Bonus » Wed, 2021-05-26 04:43
1
1,612 by matteoferla
Thu, 2021-06-03 08:24
Normal topic Fastrelax energy
by Lindsay » Thu, 2014-01-16 21:04
3
5,060 by rmoretti
Mon, 2014-04-21 06:48
Normal topic fastdesign with constraints in RosettaScripts
by staciekim » Wed, 2017-11-29 13:33
1
1,898 by rmoretti
Sat, 2017-12-02 10:22
Normal topic FARFAR2 error: [ERROR: Not complementary at positions]
by Eden » Sat, 2023-11-18 02:39
0
239 by Eden
Sat, 2023-11-18 02:39
Normal topic FARFAR2 Error With Secondary Structure File
by bdh81 » Thu, 2023-11-02 09:01
2
474 by bdh81
Sun, 2023-11-05 16:04
Normal topic FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py
by obdulia » Wed, 2018-04-18 00:45
0
1,109 by obdulia
Wed, 2018-04-18 00:45
Normal topic Failure to produce a cst file
by biotech » Wed, 2022-10-26 11:17
0
547 by biotech
Wed, 2022-10-26 11:17
Normal topic Failure to find libraries during build
by NCallahan » Mon, 2010-07-26 15:41
3
5,210 by smlewis
Mon, 2014-04-21 06:47
Normal topic Extremely low interface scores with "local refinement"
by eminegenetics » Wed, 2017-03-29 12:24
1
2,087 by rmoretti
Wed, 2017-03-29 12:37
Normal topic extraction of pdbs from silent.out files on Mac
by pramod » Tue, 2014-01-07 11:43
5
7,414 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Extracting PDBs from a Silent file: "Can't find residue type for ARG"
by avsrivatsa » Sat, 2020-10-17 16:20
2
1,858 by avsrivatsa
Mon, 2020-10-19 18:16
Normal topic Extracting a part of a silent file as another silent file
by almeida85 » Wed, 2021-07-28 23:53
1
1,222 by zivben
Sat, 2021-07-31 08:16
Normal topic extract pdbs segmentation fault
by Swillard » Fri, 2017-09-08 07:20
1
1,821 by rmoretti
Fri, 2017-09-08 15:15
Normal topic extract 10001+ pdbs
by viochemist » Thu, 2010-07-29 16:25
1
1,975 by smlewis
Mon, 2014-04-21 06:47
Normal topic Explicit water
by tsztain » Wed, 2021-08-25 05:54
1
1,435 by matteoferla
Thu, 2021-09-02 03:50
Normal topic Explanations to membrane_abinitio options
by justin » Wed, 2010-02-10 01:14
3
3,339 by justin
Mon, 2014-04-21 06:47
Normal topic Explanation of constraint functions?
by aloshbau » Mon, 2015-12-14 22:38
2
2,529 by aloshbau
Mon, 2015-12-14 23:30
Normal topic Expanding the silent file
by jharamesh » Fri, 2018-01-12 09:15
2
2,130 by rmoretti
Mon, 2018-01-15 14:35
Normal topic Every thing Ok in PC end Error on Server
by jrcf » Tue, 2016-03-22 07:21
8
7,999 by jrcf
Wed, 2016-03-23 12:16
Normal topic Evaluating energies on non-standard rotamer set
by pachecoj » Sat, 2014-07-26 16:27
5
5,033 by pachecoj
Sat, 2014-08-09 06:33
Normal topic Evaluate Docking Result
by byin » Thu, 2014-07-03 11:31
1
2,600 by rmoretti
Wed, 2014-07-16 08:07
Normal topic ETABLE constraint function type
by allan.ferrari » Tue, 2017-01-10 08:01
8
6,481 by smlewis
Sun, 2017-01-15 18:14
Normal topic Error_fragment_generation
by Payal Chatterjee » Fri, 2016-02-12 12:11
6
7,130 by G Mustafa
Fri, 2021-09-10 01:16
Normal topic errors while running rosetta 3.1
by isengupta13 » Tue, 2011-05-17 18:11
7
7,867 by jurkm
Mon, 2014-04-21 06:47
Normal topic Errors Rosetta symm refine
by ms4392 » Fri, 2016-10-21 13:56
1
2,114 by rmoretti
Mon, 2016-11-14 14:26
Normal topic Errors in scorefiles after running Design
by Jhreed » Tue, 2016-03-29 10:25
4
4,012 by smlewis
Wed, 2016-03-30 09:52
Normal topic Errors in Interface_design_demo
by zhoubin » Fri, 2019-01-04 13:14
0
1,188 by zhoubin
Fri, 2019-01-04 13:14
Normal topic Errors in Interface design  
by Kazu » Thu, 2019-10-31 17:48
4
3,023 by Kazu
Mon, 2020-05-18 10:52
Normal topic ERROR: Your compiler does not have full support for C++11 regex, and therefore can't support RegEx_based_CDR_Detector/antibody g
by yliang20 » Mon, 2022-08-08 16:59
1
1,025 by rmoretti
Tue, 2022-08-09 06:52
Normal topic ERROR: Unused "free" argument specified: GDP.fa.tors
by ahmadkhalifa » Fri, 2018-06-15 11:27
10
8,361 by smlewis
Tue, 2018-06-19 09:28
Normal topic ERROR: unrecognized atomtype property VIRTUAL
by harshkhare » Mon, 2011-11-14 09:40
3
3,788 by harshkhare
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to open weights/patch file
by peony » Sun, 2013-11-17 02:49
4
7,889 by rmoretti
Tue, 2019-07-09 10:29
Normal topic ERROR: Unable to open weights/patch file
by almeida85 » Tue, 2022-08-09 05:33
2
1,092 by almeida85
Thu, 2022-08-11 00:32
Normal topic ERROR: Unable to open weights.
by libai2098 » Thu, 2010-12-30 17:54
1
2,197 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to open file: ./1brs_0001.pdb
by dkeidel » Tue, 2009-09-29 17:46
1
3,396 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error: Start tag expected, '<' not found
by Isomerase » Wed, 2022-04-06 19:45
1
1,851 by rmoretti
Thu, 2022-04-07 07:51
Normal topic Error: Some problem with atom_id_mask in defining atom_id_map
by galvaner » Tue, 2016-03-01 13:23
1
1,809 by rmoretti
Thu, 2016-04-28 15:57
Normal topic ERROR: PDB reader is ignoring atom
by phanvy » Wed, 2014-04-16 17:59
2
3,740 by phanvy
Mon, 2014-04-21 03:58
Hot topic ERROR: Option matching -s not found in command line top-level context
by xxx » Wed, 2011-04-20 05:38
15
19,704 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ERROR: Not complementary at positions
by szcshr123 » Fri, 2021-02-26 05:58
2
1,924 by szcshr123
Fri, 2021-02-26 14:41
Normal topic ERROR: Illegal value for real option -docking:dock_pert specified: 8
by libai2098 » Tue, 2011-03-15 02:26
1
2,239 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: FragmentIO: could not open file
by ahmadkhalifa » Wed, 2018-01-31 13:30
1
2,353 by rmoretti
Wed, 2018-01-31 14:57
Normal topic ERROR: filtered_alignments.size() > 0
by jhbrown » Tue, 2012-01-17 13:28
2
2,550 by jhbrown
Mon, 2014-04-21 06:47
Normal topic ERROR: f.check_fold_tree
by sudhar » Mon, 2010-08-23 08:59
3
3,733 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query!
by Anonymous » Sat, 2012-09-08 09:33
1
3,065 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Error: Element 'RandomizeBBByRamaPrePro': This element is not expected.
by nferruz » Fri, 2020-08-28 06:04
0
928 by nferruz
Fri, 2020-08-28 06:05
Normal topic ERROR: compiling rosetta3.1 with MPI
by biofisikx » Thu, 2010-08-05 16:00
6
6,559 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: beta_nov16(.wts) requested, but -corrections::beta_nov16 not set to true. This leads to a garbage scorefunction.
by sia » Mon, 2023-05-08 06:36
6
1,493 by rmoretti
Tue, 2023-05-16 07:10
Normal topic ERROR: Assertion `build_sets_[ build_set_id ].restype().has( "1HA" )` failed. ERROR:: Exit from: src/protocols/match/upstream/Pr
by alove1 » Sat, 2023-10-28 17:19
3
616 by alove1
Mon, 2023-10-30 13:18
Normal topic ERROR: Assertion Fdensity.u2 and Fdensity.u3 failed
by ahmadkhalifa » Wed, 2017-12-06 07:38
13
9,086 by brandon.frenz
Thu, 2018-03-08 09:28
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Thu, 2016-06-30 11:06
2
4,160 by rmoretti
Tue, 2016-07-12 08:18
Normal topic Error with simple_cycpep_predict protocol while using a native pdb file
by Florent Langenfeld » Tue, 2019-03-26 10:05
3
2,573 by Florent Langenfeld
Tue, 2020-09-22 03:03
Normal topic Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations.
by He Xiao » Mon, 2022-11-07 03:41
0
554 by He Xiao
Mon, 2022-11-07 04:10
Normal topic Error with residue selectors not counting indices correctly.
by Wexter300 » Tue, 2023-04-04 11:04
1
540 by ajasja
Wed, 2023-04-05 00:20
Normal topic Error with options -dunbrack_prob_buried_semi and -dunbrack_prob_nonburied_semi
by SamuelGong » Fri, 2023-01-27 06:20
3
990 by rmoretti
Mon, 2023-01-30 08:04
Normal topic Error with non-canonical amino acid in SnugDock.
by sk0319 » Thu, 2016-12-29 16:12
8
7,393 by sk0319
Wed, 2017-01-11 10:52
Normal topic Error with filter in rosseta_scripts
by Osmany Guirola » Mon, 2020-05-11 04:52
0
959 by Osmany Guirola
Mon, 2020-05-11 04:52
Normal topic Error while trying to run r_noe_assign
by sn » Mon, 2017-03-13 11:40
1
1,706 by rmoretti
Tue, 2017-03-28 09:02
Normal topic Error while running MakeRotLib
by saxen » Sun, 2016-04-17 22:51
4
4,694 by saxen
Mon, 2016-04-25 10:38
Normal topic error when using script best_ifaceE.py
by windmill » Thu, 2020-06-18 21:30
1
1,274 by windmill
Thu, 2020-06-18 21:32
Normal topic Error when using rna_denovo in TACC stampede2 HPC
by lsong2 » Thu, 2021-11-18 10:31
0
684 by lsong2
Thu, 2021-11-18 10:31
Normal topic Error when using published constraints file
by Delfosse57 » Thu, 2023-08-17 11:22
2
559 by ikalvet
Mon, 2023-08-21 05:52
Normal topic Error when using next-gen KIC (Signal 6)
by janwp » Tue, 2014-08-26 08:36
1
2,922 by amelie
Tue, 2014-09-30 14:29
Normal topic Error when using RabD with a nanobody.
by zhangying1990 » Mon, 2018-12-17 04:40
5
4,163 by jadolfbr
Mon, 2019-01-28 08:46
Normal topic Error when trying to use xml script to design PDB
by Wexter300 » Fri, 2023-02-24 13:29
1
657 by rmoretti
Fri, 2023-02-24 13:58
Normal topic Error when running prepack of PLEXPEPDOCKING
by phanvy » Wed, 2014-06-18 07:11
11
11,615 by G Mustafa
Fri, 2021-09-10 08:20
Normal topic Error when running FRAGMENT generation
by phanvy » Sat, 2014-09-20 17:53
12
13,727 by rmoretti
Mon, 2014-10-06 16:50
Normal topic Error when running enzyme_design tutorial
by linucks » Fri, 2017-06-30 12:26
4
3,837 by linucks
Mon, 2017-07-03 09:50
Normal topic Error when running AqueousPoreFinder protocol
by mluengo » Mon, 2023-12-11 02:55
0
271 by mluengo
Mon, 2023-12-11 03:13
Normal topic Error when running "plot_LHOC.py"
by Sunyp_IM » Sun, 2017-08-13 05:54
5
4,398 by smlewis
Wed, 2017-08-16 08:30
Normal topic error when running beta_strand_homodimer_design
by szypanther » Sun, 2014-05-25 20:22
2
3,636 by szypanther
Mon, 2014-05-26 22:03
Normal topic ERROR when run prepacking pdbfile in Rosetta 3.4
by phanvy » Thu, 2014-04-17 00:04
14
14,943 by phanvy
Wed, 2014-06-18 07:50
Normal topic Error when renumbering PDB
by dzhao » Wed, 2012-07-18 01:03
7
9,424 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Error when clustering the output from a docking study
by jos » Thu, 2011-09-08 03:26
2
3,447 by jos
Mon, 2014-04-21 06:47
Normal topic Error when attempting to relax pdb, "flag_input_relax" not found
by Wexter300 » Mon, 2023-01-23 11:32
4
1,107 by Wexter300
Wed, 2023-01-25 12:34
Normal topic Error using pHDock
by SenyorDrew » Thu, 2016-08-11 05:56
0
1,645 by SenyorDrew
Thu, 2016-08-11 05:56
Normal topic Error using InterfaceHoles filter
by SenyorDrew » Fri, 2017-04-14 08:55
4
4,730 by SenyorDrew
Mon, 2017-07-24 11:06
Normal topic Error using FilterScan with rosettascripts
by SenyorDrew » Tue, 2016-12-13 14:29
0
1,334 by SenyorDrew
Tue, 2016-12-13 14:29
Normal topic Error using ddg_monomer application (Assertion `pose.residue(resnum).name1() == wt` failed)
by sgaray » Thu, 2021-06-24 14:47
2
2,503 by sgaray
Fri, 2021-06-25 11:26
Normal topic Error Scoring Application- Illegal attempt to score
by samuelrpita » Thu, 2015-08-06 14:45
3
4,948 by rmoretti
Wed, 2015-08-12 15:03
Normal topic Error score_scatter_plot.py
by jrcf » Wed, 2015-12-30 05:46
2
3,467 by jrcf
Fri, 2016-02-12 16:41
Normal topic Error running snugdock
by SenyorDrew » Tue, 2017-03-14 10:00
5
4,865 by SenyorDrew
Wed, 2017-03-29 06:40
Normal topic Error running RosettaAntibodyDesign application
by SenyorDrew » Mon, 2017-10-30 08:13
1
2,065 by jadolfbr
Wed, 2017-11-01 10:11
Normal topic error running rosetta3.1 demos
by lvtun » Thu, 2010-10-21 20:43
2
3,147 by lvtun
Mon, 2014-04-21 06:47
Normal topic error running rosetta3.0
by aschoenr » Wed, 2009-06-10 13:57
1
2,760 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Error running GenericMonteCarlo mover within MultipleOutputWrapper mover
by abhi_pe_acharya » Mon, 2018-04-16 04:58
1
2,262 by abhi_pe_acharya
Thu, 2018-04-19 03:49
Normal topic Error running design in 3.4
by inder » Thu, 2012-07-05 19:27
2
3,556 by inder
Mon, 2014-04-21 06:47
Normal topic Error running Abinitio relax with @flags
by samuelrpita » Mon, 2015-10-05 13:20
7
7,984 by rmoretti
Tue, 2015-10-27 09:11
Normal topic error running "helix_preassemble_setup.py"
by zahra_AZ » Tue, 2020-11-03 01:54
1
1,463 by rmoretti
Tue, 2021-02-09 12:19
Normal topic ERROR READING PDB FILE
by asmi » Sat, 2011-02-26 07:23
7
8,903 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error reading new residue .param file
by mgrom92 » Tue, 2016-03-22 12:54
2
4,430 by mgrom92
Wed, 2016-03-23 16:45
Normal topic Error on rna_denovo_setup.py
by zahra_AZ » Mon, 2020-11-09 02:23
0
1,040 by zahra_AZ
Mon, 2020-11-09 02:23
Normal topic Error message: ArchiveManager spinning down
by Lati » Sun, 2016-01-24 02:42
1
2,452 by smlewis
Sun, 2016-01-24 03:24
Normal topic error message of runing make_fragment
by joseph » Fri, 2010-11-12 11:46
0
1,876 by joseph
Mon, 2014-04-21 06:47
Normal topic Error in src/protocols/membrane/util.cc line: 1224
by renedominik » Tue, 2020-02-11 08:10
1
1,450 by renedominik
Wed, 2020-02-12 06:16
Normal topic Error in Running Symmetry Docking cutpoint.
by Jacob » Wed, 2011-06-01 08:21
1
2,360 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error in rosetta_scripts.mpi.linuxgccrelease: double free or corruption (!prev): 0x0000000007697a90
by almeida85 » Thu, 2022-11-17 01:04
0
574 by almeida85
Thu, 2022-11-17 01:04
Normal topic Error in RMSD calculation when native sequence deviates
by abdullah » Tue, 2009-11-10 08:56
1
2,718 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error in molfile_to_params_polymer.py for NCAA
by kkuo33 » Mon, 2020-05-18 16:41
1
1,734 by matteoferla
Sat, 2020-05-23 03:09
Normal topic error in mol2 to params conversion for GAliganddocking
by jalan » Wed, 2020-04-22 06:08
2
1,917 by jalan
Thu, 2020-04-23 05:19
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