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Rosetta 3 - General

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Normal topic hydrophobicity patch
by Lindsay » Fri, 2012-05-04 08:24
7
5,280 by Lindsay
Mon, 2014-04-21 06:47
Normal topic errors while running rosetta 3.1
by isengupta13 » Tue, 2011-05-17 18:11
7
5,016 by jurkm
Mon, 2014-04-21 06:47
Normal topic cutpoint error!
by monos_morpheus » Thu, 2011-04-07 08:04
7
4,709 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic ERROR READING PDB FILE
by asmi » Sat, 2011-02-26 07:23
7
5,482 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to input constraints?
by violetsha7 » Wed, 2009-05-13 00:13
7
5,790 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to optimize the weights?
by Lindsay » Tue, 2012-04-10 07:40
7
3,507 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta3.3 enzyme_design errors
by jtmacd » Wed, 2012-01-25 03:33
7
4,991 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Help with get_pdb.py for PDB file cleaning
by lzx32 » Mon, 2011-03-28 02:11
7
6,044 by smlewis
Mon, 2014-04-21 06:47
Normal topic memory issue rosetta3.4 scripts
by ast » Mon, 2013-01-28 06:25
8
5,768 by smlewis
Mon, 2014-04-21 06:47
Normal topic kinematic loop modeling/sequence design keeps crashing with segmentation fault
by banshee » Thu, 2013-03-28 09:52
8
4,877 by smlewis
Mon, 2014-04-21 06:47
Normal topic Submitting job to local cluster
by tusharranjanmoharana » Fri, 2016-04-15 01:38
8
5,678 by rmoretti
Mon, 2016-05-09 09:23
Normal topic how to design binding interface?
by Lindsay » Mon, 2013-12-02 19:06
8
6,661 by rmoretti
Tue, 2019-07-09 12:50
Normal topic Error with non-canonical amino acid in SnugDock.
by sk0319 » Thu, 2016-12-29 16:12
8
3,553 by sk0319
Wed, 2017-01-11 10:52
Normal topic using constraints with AbinitioRelax (Rosetta 3.1)
by ndousis » Fri, 2009-12-18 08:56
8
5,132 by ndousis
Mon, 2014-04-21 06:47
Normal topic Resfile
by vijayaraj81 » Thu, 2014-02-27 01:14
8
4,902 by vijayaraj81
Tue, 2014-03-04 05:07
Normal topic ETABLE constraint function type
by allan.ferrari » Tue, 2017-01-10 08:01
8
3,141 by smlewis
Sun, 2017-01-15 18:14
Normal topic Rosetta job distribution error
by ss » Thu, 2019-08-01 09:26
8
1,246 by ac.research
Mon, 2020-02-10 08:19
Normal topic talaris2013 energy terms modifications
by peony » Sat, 2013-11-23 02:48
8
10,112 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaVIP
by nick.polizzi » Tue, 2013-08-06 15:13
8
4,187 by rmoretti
Mon, 2014-04-21 06:48
Normal topic loop remodelling with a fixed bound DNA
by jtmacd » Thu, 2010-02-25 03:23
8
3,519 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Every thing Ok in PC end Error on Server
by jrcf » Tue, 2016-03-22 07:21
8
4,286 by jrcf
Wed, 2016-03-23 12:16
Normal topic Rosetta3 Tutorials
by smlewis » Fri, 2011-11-18 07:33
8
12,718 by rmoretti
Tue, 2019-07-09 10:24
Normal topic building a 77 aa long protein fragment
by tevang » Sat, 2010-02-20 11:37
8
4,336 by gsmurphy
Mon, 2014-04-21 06:47
Normal topic Debugging Rosetta under XCode
by sacch » Sun, 2011-10-16 18:23
8
4,751 by sacch
Mon, 2014-04-21 06:47
Normal topic Looking for a pdb....
by MarkW » Mon, 2014-10-13 15:45
8
4,759 by rmoretti
Mon, 2014-11-03 16:30
Normal topic Rosetta reference energy
by Lindsay » Mon, 2012-05-07 07:56
9
5,623 by Lindsay
Mon, 2014-04-21 06:47
Normal topic MPI stall
by jadolfbr » Thu, 2013-10-10 18:59
9
6,490 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Change in binding energy after mutation in interface?
by cossio » Mon, 2014-12-01 06:27
9
6,998 by rmoretti
Thu, 2015-04-30 16:25
Normal topic flexible backbone design (fixbb+relax)
by sdh_h » Mon, 2013-02-04 03:19
9
7,019 by gsmurphy
Mon, 2014-04-21 06:47
Normal topic Running a ReportFSC mover between two .mrc maps
by ahmadkhalifa » Mon, 2018-03-12 07:52
9
2,236 by brandon.frenz
Tue, 2018-03-20 10:28
Normal topic Can Fold-and-dock protocol applied to membrane proteins
by justin » Thu, 2011-07-21 00:14
9
5,694 by wangyr
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax with very small peptides
by jamsmad » Tue, 2012-09-04 13:45
9
5,485 by jamsmad
Mon, 2014-04-21 06:47
Normal topic Clustering using an disrupted run silent file
by PaulaBanks » Mon, 2013-07-15 02:19
9
4,849 by rmoretti
Wed, 2014-09-24 09:57
Normal topic input_score_filter not taken by program cluster ?
by Anonymous » Mon, 2012-06-11 09:14
9
5,450 by attesor
Fri, 2014-10-31 04:49
Normal topic is it possible to generate models without hydrogen?
by albumns » Fri, 2012-03-02 12:24
9
4,742 by albumns
Mon, 2014-04-21 06:47
Normal topic Loop Modeling with fixed backbone
by bharat_46010 » Mon, 2011-12-19 05:20
9
5,244 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic How to calculate the binding energy of peptide and a protein?
by tianbu » Thu, 2014-02-13 20:44
9
6,772 by tianbu
Mon, 2014-02-17 03:36
Normal topic Problems with "pdb_renumber.py" in tutorial Advanced Protein-Protein Docking
by Sunyp_IM » Sun, 2017-06-25 02:40
9
3,604 by ac.research
Mon, 2018-05-14 10:20
Normal topic How to get multiple chains in PDB from Fold and Dock
by arthuc01 » Tue, 2012-05-29 02:05
9
5,458 by arthuc01
Mon, 2014-04-21 06:47
Normal topic energy minimization of loop only
by jtmacd » Wed, 2011-01-12 07:09
9
6,434 by lanselibai
Wed, 2014-10-15 01:41
Normal topic Re: Protein-RNA interface design
by bharat_46010 » Tue, 2015-04-07 04:44
9
5,225 by rmoretti
Mon, 2015-06-01 15:27
Normal topic disulfide bonds using abinitio folding module
by crfenollar » Wed, 2010-02-24 03:26
10
8,476 by lanselibai
Tue, 2015-02-10 14:03
Normal topic Remote access to Rosetta on Blue Gene or another HPC system?
by rfieldhouse » Mon, 2011-05-16 08:40
10
5,729 by rfieldhouse
Mon, 2014-04-21 06:47
Normal topic error during docking
by zhisheng » Thu, 2012-02-02 12:10
10
5,467 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using Degenerate Protons in Rosetta3.x
by jurkm » Wed, 2011-06-08 03:25
10
7,037 by jurkm
Mon, 2014-04-21 06:47
Normal topic Relax Refinement for complecated targets
by jiongzhang » Fri, 2012-01-20 09:57
10
4,510 by jiongzhang
Mon, 2014-04-21 06:47
Normal topic latest version of rosetta--unable to build models
by pramod » Mon, 2014-11-03 11:40
10
6,293 by jadolfbr
Wed, 2014-11-26 11:40
Normal topic Error when running prepack of PLEXPEPDOCKING
by phanvy » Wed, 2014-06-18 07:11
10
6,063 by nawsad
Tue, 2014-09-23 21:38
Normal topic Modeling of a Multi-Domain Dimer
by jurkm » Mon, 2011-08-29 01:39
10
6,639 by jurkm
Mon, 2014-04-21 06:47
Normal topic ERROR: Unused "free" argument specified: GDP.fa.tors
by ahmadkhalifa » Fri, 2018-06-15 11:27
10
2,793 by smlewis
Tue, 2018-06-19 09:28
Normal topic what is "-relax:sequence" ?
by Anonymous » Fri, 2012-06-08 06:31
10
5,163 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does the fold count reset if abinitio is restarted?
by burkheadlab » Mon, 2011-06-13 11:39
10
5,666 by rmoretti
Thu, 2017-02-02 08:32
Normal topic How do you implement phosphoserine in ab -initio folding?
by smiruthi » Fri, 2011-12-16 14:45
10
5,877 by brspurri
Mon, 2014-04-21 06:47
Normal topic pNNMAKE compilation
by adva » Sun, 2012-12-02 03:59
10
4,713 by smlewis
Mon, 2014-04-21 06:47
Normal topic CryoEM model refinement with covalent conjugated prosthetic Phosphopantetheine carrying acyl group
by ZhijunW » Thu, 2020-09-03 18:36
11
352 by matteoferla
Sat, 2020-09-12 03:02
Normal topic -dock_pert problem
by mahajanr » Mon, 2010-07-19 15:45
11
6,012 by weitzner
Mon, 2014-04-21 06:47
Normal topic type of docking
by rohi » Mon, 2020-07-06 06:55
11
697 by rohi
Sun, 2020-07-26 17:03
Normal topic Is it possible to do Abinitio folding from a linear structure.?
by monos_morpheus » Sat, 2011-04-16 09:13
11
5,777 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic What is the general protocol for antibody-antigen docking without the native antibody-antigen structures?
by Sunyp_IM » Sun, 2017-08-13 05:42
11
3,572 by smlewis
Tue, 2017-08-29 08:56
Normal topic AB INITIO WITH METALLOPROTEIN
by kaue » Sun, 2012-06-17 14:04
11
7,540 by masterofpuppets
Tue, 2015-02-10 01:33
Normal topic Histidine protonation
by DmitriiN » Mon, 2016-09-26 13:15
11
9,514 by rmoretti
Mon, 2018-01-15 15:37
Normal topic How to do ab initio with fixed part of protein
by eunwook » Tue, 2013-04-16 03:00
11
7,076 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Constraints in Loop Modeling
by Julix » Wed, 2012-12-05 07:08
11
6,134 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to obtain alignment file for comparative modeling under Rosetta 3.1?
by lennylv » Tue, 2010-05-25 01:29
11
11,828 by sabine
Mon, 2014-04-21 06:47
Normal topic fragment-based loop modeling to get a helix at the loop site
by berk » Wed, 2013-05-29 06:00
11
5,402 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta 3.1 compile error, Linux 32 bit
by viochemist » Thu, 2010-07-29 08:40
11
7,692 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to design a protein complex
by Lindsay » Tue, 2013-11-05 20:24
11
7,807 by Lindsay
Mon, 2014-04-21 06:48
Normal topic InterfaceAnalyzer packstat score = 0.000
by vmc99 » Fri, 2018-11-16 11:30
11
2,659 by SenyorDrew
Wed, 2019-06-12 14:10
Normal topic make_fragment.pl Error!
by Apiwat » Sat, 2014-02-15 13:35
12
8,286 by Apiwat
Tue, 2014-03-11 09:42
Normal topic Why are all source codes .gz and not .tgz
by jasnyderjr » Tue, 2016-12-20 21:23
12
4,872 by smlewis
Thu, 2016-12-22 13:11
Normal topic Docking an iron atom to a peptide
by buzb » Wed, 2011-01-26 09:49
12
8,636 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error when running FRAGMENT generation
by phanvy » Sat, 2014-09-20 17:53
12
7,849 by rmoretti
Mon, 2014-10-06 16:50
Normal topic Anyone here knows what is the protocol capture archive???????!!
by MajorID » Thu, 2011-06-02 01:50
12
7,378 by rmoretti
Fri, 2015-04-24 12:15
Normal topic I'm a total beginner to Rosetta 3.2 and there are no tutorials for me to follow. Can someone help.? =)
by monos_morpheus » Wed, 2011-02-02 08:11
12
6,648 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic B1_SampleSegment1.sh from RosettaES tutorial crashes
by ab » Tue, 2017-07-04 08:42
12
4,041 by brandon.frenz
Sat, 2017-07-08 13:49
Normal topic How to put rdc data in refinement protocol?
by zhisheng » Tue, 2012-11-20 03:55
13
6,703 by rmoretti
Mon, 2014-04-21 06:47
Normal topic fragment_picker problem
by adva » Tue, 2012-12-18 01:15
13
7,548 by sabine
Mon, 2014-04-21 06:47
Normal topic Copying angles (pose.set_phi()) from a substructure with the same sequence to pose doesn't produce the exact same substructure?
by resiros » Wed, 2012-08-22 07:20
13
5,835 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling circular permutation and domain insertion
by bharat_46010 » Sun, 2011-04-10 19:54
13
6,659 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic fixbb minimize sidechains with symmetric pose - recompile?
by Anonymous » Wed, 2012-08-22 06:14
13
6,144 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic lysine-aspartate isopeptide bond
by matteoferla » Tue, 2016-11-01 10:54
13
6,014 by ablakely7
Wed, 2019-09-11 15:33
Normal topic minirosetta segmentation fault
by sabine » Wed, 2013-12-11 13:08
13
9,994 by rmoretti
Tue, 2014-11-11 13:56
Normal topic Ab Initio Modelling of Protein with Small-Molecule Cofactor
by jurkm » Thu, 2011-03-10 06:56
13
9,524 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ERROR: Assertion Fdensity.u2 and Fdensity.u3 failed
by ahmadkhalifa » Wed, 2017-12-06 07:38
13
3,211 by brandon.frenz
Thu, 2018-03-08 09:28
Normal topic How to relax only one domain of a protein and keep the rest of them fixed
by tevang » Sun, 2011-04-10 03:16
14
8,287 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR when run prepacking pdbfile in Rosetta 3.4
by phanvy » Thu, 2014-04-17 00:04
14
8,911 by phanvy
Wed, 2014-06-18 07:50
Normal topic Warning when running cluster program
by Anonymous » Fri, 2012-06-15 02:39
14
6,292 by Anonymous
Mon, 2014-04-21 06:47
Hot topic ERROR: Option matching -s not found in command line top-level context
by xxx » Wed, 2011-04-20 05:38
15
13,105 by rmoretti
Mon, 2014-04-21 06:47
Hot topic Docking a protein into a symmetrical complex
by saxen » Fri, 2011-04-08 22:24
15
8,182 by saxen
Mon, 2014-04-21 06:47
Hot topic Steps to use D-amino acids
by tevang » Mon, 2012-09-10 15:42
15
9,437 by tevang
Mon, 2014-04-21 06:47
Hot topic protein interface design for multi-chain complex
by jarod » Sun, 2013-05-05 23:18
16
8,590 by rmoretti
Mon, 2014-04-21 06:47
Hot topic Ligand Docking Positive Control: wt ligand
by Basantab » Thu, 2011-10-27 13:36
16
7,936 by Basantab
Mon, 2014-04-21 06:47
Hot topic modified Serine: FoldTree::reorder( 1 ) failed, new/old edge_list_ size mismatch error
by Karol » Wed, 2016-05-04 08:47
17
8,129 by smlewis
Tue, 2016-05-17 08:06
Hot topic high resolution protein docking doesn't work
by albumns » Thu, 2010-12-02 02:36
17
8,145 by albumns
Mon, 2014-04-21 06:47
Hot topic Submit job in parallel : MPI and jd2 ?
by anusmita_sahoo » Wed, 2010-03-31 00:18
18
11,453 by jadolfbr
Wed, 2014-05-14 08:51
Hot topic Creating centroid patches for Proline (pro_hydroxylated_case1 and pro_hydroxylated_case2)
by skovacs » Thu, 2012-05-10 20:10
18
10,110 by aaj
Fri, 2016-04-22 15:20
Hot topic problem compiling rosetta3.1 in windows vista 32 bit using cygwin 1.7.5-1
by Marsia » Thu, 2010-07-22 22:49
18
9,073 by smlewis
Mon, 2014-04-21 06:47
Hot topic Modeling phosphate ion binding site in protein.
by bharat_46010 » Tue, 2011-05-17 19:08
19
13,429 by rmoretti
Mon, 2014-04-21 06:47
Hot topic RE: Loop Modeling and Beta-strand design
by bharat_46010 » Sun, 2012-02-12 16:34
19
9,890 by smlewis
Mon, 2014-04-21 06:47
Hot topic membrane abinitio on heteromultimeric complexes
by omirus » Fri, 2013-04-26 14:48
19
9,860 by pledor
Mon, 2014-04-21 06:47
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