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Rosetta 3 - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic How to input constraints?
by violetsha7 » Wed, 2009-05-13 00:13
7
6,209 by smlewis
Mon, 2014-04-21 06:47
Normal topic errors while running rosetta 3.1
by isengupta13 » Tue, 2011-05-17 18:11
7
5,345 by jurkm
Mon, 2014-04-21 06:47
Normal topic cutpoint error!
by monos_morpheus » Thu, 2011-04-07 08:04
7
5,032 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic ERROR READING PDB FILE
by asmi » Sat, 2011-02-26 07:23
7
5,885 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta3.3 enzyme_design errors
by jtmacd » Wed, 2012-01-25 03:33
7
5,388 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Help with get_pdb.py for PDB file cleaning
by lzx32 » Mon, 2011-03-28 02:11
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6,398 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to optimize the weights?
by Lindsay » Tue, 2012-04-10 07:40
7
3,827 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Talaris score function
by nawsad » Tue, 2013-05-21 03:32
7
6,066 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Structure refinement guided by Cryo-EM density maps
by ahmadkhalifa » Thu, 2018-03-08 08:22
7
3,373 by ahmadkhalifa
Tue, 2018-05-01 09:04
Normal topic Error running Abinitio relax with @flags
by samuelrpita » Mon, 2015-10-05 13:20
7
4,874 by rmoretti
Tue, 2015-10-27 09:11
Normal topic Docking + Active Site Design
by bharat_46010 » Sat, 2014-12-13 23:04
7
5,464 by rmoretti
Wed, 2015-01-21 08:43
Normal topic Rosetta3 Tutorials Beta Release
by smlewis » Fri, 2011-08-19 13:35
7
5,028 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop Modeling Deletes Residues
by Julix » Wed, 2012-09-05 10:14
7
4,306 by smlewis
Mon, 2014-04-21 06:47
Normal topic log files
by shadrinams » Fri, 2018-01-26 07:29
7
3,311 by shadrinams
Mon, 2018-02-12 11:47
Normal topic Is the packer aware of non canonical amino acids?
by krdav » Tue, 2016-08-16 08:16
7
3,786 by krdav
Wed, 2016-08-17 12:57
Normal topic about Residue Number in Rosetta
by jiongzhang » Mon, 2012-06-11 14:58
7
7,220 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to deal with Cu-as a ligand or as part of the receptor?
by hanypao » Fri, 2011-09-30 18:50
7
7,105 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Question on eval_atom_derivative function.
by Al52 » Thu, 2015-12-03 16:17
7
3,961 by rmoretti
Thu, 2016-02-04 09:29
Normal topic best_ifaceE.py error
by rosa » Fri, 2013-07-12 08:35
7
4,091 by rosa
Mon, 2014-04-21 06:48
Normal topic A question about Multiple constraints
by kxiao » Mon, 2014-06-16 07:02
7
4,450 by masterofpuppets
Fri, 2014-12-19 08:30
Normal topic Using D-amino acids in Rosetta docking
by moehle » Wed, 2011-06-01 00:49
7
5,954 by moehle
Mon, 2014-04-21 06:47
Normal topic Reproducing Rosetta++ scoring function with Rosetta 3?
by JuliusSu » Mon, 2014-03-17 21:15
7
4,460 by JuliusSu
Wed, 2014-03-19 20:38
Normal topic rerun same experiment on MPI.
by exchhattu » Tue, 2010-02-23 21:14
7
4,679 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Antibody homology modeling fails after blastp
by sunhwan » Sat, 2017-02-18 11:25
7
3,168 by sunhwan
Mon, 2017-02-27 11:02
Normal topic How does one prevent Rosetta from connecting two separate chains?
by jhbrown » Thu, 2011-12-15 14:08
7
4,390 by Anonymous
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax using multiple cores on a single machine without mpi?
by JoG » Tue, 2011-10-25 00:40
7
5,682 by smlewis
Mon, 2014-04-21 06:47
Normal topic General Protein Folding Question
by twopint23oz » Sun, 2012-04-01 22:57
7
3,990 by smlewis
Mon, 2014-04-21 06:47
Normal topic talaris2013 energy terms modifications
by peony » Sat, 2013-11-23 02:48
8
10,753 by rmoretti
Mon, 2014-04-21 06:48
Normal topic building a 77 aa long protein fragment
by tevang » Sat, 2010-02-20 11:37
8
4,669 by gsmurphy
Mon, 2014-04-21 06:47
Normal topic RosettaVIP
by nick.polizzi » Tue, 2013-08-06 15:13
8
4,615 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Problems with Cterm_amidation.txt
by helenah » Thu, 2020-10-08 04:52
8
677 by helenah
Tue, 2020-11-03 04:33
Normal topic Every thing Ok in PC end Error on Server
by jrcf » Tue, 2016-03-22 07:21
8
4,694 by jrcf
Wed, 2016-03-23 12:16
Normal topic Rosetta3 Tutorials
by smlewis » Fri, 2011-11-18 07:33
8
13,244 by rmoretti
Tue, 2019-07-09 10:24
Normal topic Debugging Rosetta under XCode
by sacch » Sun, 2011-10-16 18:23
8
5,190 by sacch
Mon, 2014-04-21 06:47
Normal topic Looking for a pdb....
by MarkW » Mon, 2014-10-13 15:45
8
5,137 by rmoretti
Mon, 2014-11-03 16:30
Normal topic memory issue rosetta3.4 scripts
by ast » Mon, 2013-01-28 06:25
8
6,243 by smlewis
Mon, 2014-04-21 06:47
Normal topic kinematic loop modeling/sequence design keeps crashing with segmentation fault
by banshee » Thu, 2013-03-28 09:52
8
5,280 by smlewis
Mon, 2014-04-21 06:47
Normal topic Submitting job to local cluster
by tusharranjanmoharana » Fri, 2016-04-15 01:38
8
6,122 by rmoretti
Mon, 2016-05-09 09:23
Normal topic how to design binding interface?
by Lindsay » Mon, 2013-12-02 19:06
8
7,160 by rmoretti
Tue, 2019-07-09 12:50
Normal topic Error with non-canonical amino acid in SnugDock.
by sk0319 » Thu, 2016-12-29 16:12
8
3,966 by sk0319
Wed, 2017-01-11 10:52
Normal topic using constraints with AbinitioRelax (Rosetta 3.1)
by ndousis » Fri, 2009-12-18 08:56
8
5,574 by ndousis
Mon, 2014-04-21 06:47
Normal topic Resfile
by vijayaraj81 » Thu, 2014-02-27 01:14
8
5,315 by vijayaraj81
Tue, 2014-03-04 05:07
Normal topic ETABLE constraint function type
by allan.ferrari » Tue, 2017-01-10 08:01
8
3,498 by smlewis
Sun, 2017-01-15 18:14
Normal topic Rosetta job distribution error
by ss » Thu, 2019-08-01 09:26
8
1,850 by ac.research
Mon, 2020-02-10 08:19
Normal topic loop remodelling with a fixed bound DNA
by jtmacd » Thu, 2010-02-25 03:23
8
3,822 by jtmacd
Mon, 2014-04-21 06:47
Normal topic is it possible to generate models without hydrogen?
by albumns » Fri, 2012-03-02 12:24
9
5,179 by albumns
Mon, 2014-04-21 06:47
Normal topic Loop Modeling with fixed backbone
by bharat_46010 » Mon, 2011-12-19 05:20
9
5,676 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic How to calculate the binding energy of peptide and a protein?
by tianbu » Thu, 2014-02-13 20:44
9
7,357 by tianbu
Mon, 2014-02-17 03:36
Normal topic Problems with "pdb_renumber.py" in tutorial Advanced Protein-Protein Docking
by Sunyp_IM » Sun, 2017-06-25 02:40
9
4,077 by ac.research
Mon, 2018-05-14 10:20
Normal topic How to get multiple chains in PDB from Fold and Dock
by arthuc01 » Tue, 2012-05-29 02:05
9
5,882 by arthuc01
Mon, 2014-04-21 06:47
Normal topic energy minimization of loop only
by jtmacd » Wed, 2011-01-12 07:09
9
6,838 by lanselibai
Wed, 2014-10-15 01:41
Normal topic Re: Protein-RNA interface design
by bharat_46010 » Tue, 2015-04-07 04:44
9
5,639 by rmoretti
Mon, 2015-06-01 15:27
Normal topic Rosetta reference energy
by Lindsay » Mon, 2012-05-07 07:56
9
6,048 by Lindsay
Mon, 2014-04-21 06:47
Normal topic MPI stall
by jadolfbr » Thu, 2013-10-10 18:59
9
6,944 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Change in binding energy after mutation in interface?
by cossio » Mon, 2014-12-01 06:27
9
7,474 by rmoretti
Thu, 2015-04-30 16:25
Normal topic flexible backbone design (fixbb+relax)
by sdh_h » Mon, 2013-02-04 03:19
9
7,534 by gsmurphy
Mon, 2014-04-21 06:47
Normal topic Running a ReportFSC mover between two .mrc maps
by ahmadkhalifa » Mon, 2018-03-12 07:52
9
2,688 by brandon.frenz
Tue, 2018-03-20 10:28
Normal topic Can Fold-and-dock protocol applied to membrane proteins
by justin » Thu, 2011-07-21 00:14
9
6,105 by wangyr
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax with very small peptides
by jamsmad » Tue, 2012-09-04 13:45
9
5,933 by jamsmad
Mon, 2014-04-21 06:47
Normal topic Clustering using an disrupted run silent file
by PaulaBanks » Mon, 2013-07-15 02:19
9
5,251 by rmoretti
Wed, 2014-09-24 09:57
Normal topic input_score_filter not taken by program cluster ?
by Anonymous » Mon, 2012-06-11 09:14
9
5,855 by attesor
Fri, 2014-10-31 04:49
Normal topic ERROR: Unused "free" argument specified: GDP.fa.tors
by ahmadkhalifa » Fri, 2018-06-15 11:27
10
3,403 by smlewis
Tue, 2018-06-19 09:28
Normal topic Does the fold count reset if abinitio is restarted?
by burkheadlab » Mon, 2011-06-13 11:39
10
6,062 by rmoretti
Thu, 2017-02-02 08:32
Normal topic disulfide bonds using abinitio folding module
by crfenollar » Wed, 2010-02-24 03:26
10
9,040 by lanselibai
Tue, 2015-02-10 14:03
Normal topic what is "-relax:sequence" ?
by Anonymous » Fri, 2012-06-08 06:31
10
5,626 by smlewis
Mon, 2014-04-21 06:47
Normal topic How do you implement phosphoserine in ab -initio folding?
by smiruthi » Fri, 2011-12-16 14:45
10
6,311 by brspurri
Mon, 2014-04-21 06:47
Normal topic pNNMAKE compilation
by adva » Sun, 2012-12-02 03:59
10
5,147 by smlewis
Mon, 2014-04-21 06:47
Normal topic Remote access to Rosetta on Blue Gene or another HPC system?
by rfieldhouse » Mon, 2011-05-16 08:40
10
6,149 by rfieldhouse
Mon, 2014-04-21 06:47
Normal topic error during docking
by zhisheng » Thu, 2012-02-02 12:10
10
5,951 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using Degenerate Protons in Rosetta3.x
by jurkm » Wed, 2011-06-08 03:25
10
7,576 by jurkm
Mon, 2014-04-21 06:47
Normal topic Relax Refinement for complecated targets
by jiongzhang » Fri, 2012-01-20 09:57
10
4,909 by jiongzhang
Mon, 2014-04-21 06:47
Normal topic latest version of rosetta--unable to build models
by pramod » Mon, 2014-11-03 11:40
10
6,788 by jadolfbr
Wed, 2014-11-26 11:40
Normal topic Error when running prepack of PLEXPEPDOCKING
by phanvy » Wed, 2014-06-18 07:11
10
6,549 by nawsad
Tue, 2014-09-23 21:38
Normal topic Modeling of a Multi-Domain Dimer
by jurkm » Mon, 2011-08-29 01:39
10
7,126 by jurkm
Mon, 2014-04-21 06:47
Normal topic Histidine protonation
by DmitriiN » Mon, 2016-09-26 13:15
11
10,420 by rmoretti
Mon, 2018-01-15 15:37
Normal topic How to obtain alignment file for comparative modeling under Rosetta 3.1?
by lennylv » Tue, 2010-05-25 01:29
11
12,364 by sabine
Mon, 2014-04-21 06:47
Normal topic AB INITIO WITH METALLOPROTEIN
by kaue » Sun, 2012-06-17 14:04
11
8,144 by masterofpuppets
Tue, 2015-02-10 01:33
Normal topic Rosetta 3.1 compile error, Linux 32 bit
by viochemist » Thu, 2010-07-29 08:40
11
8,180 by smlewis
Mon, 2014-04-21 06:47
Normal topic Constraints in Loop Modeling
by Julix » Wed, 2012-12-05 07:08
11
6,722 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to do ab initio with fixed part of protein
by eunwook » Tue, 2013-04-16 03:00
11
7,733 by rmoretti
Mon, 2014-04-21 06:47
Normal topic fragment-based loop modeling to get a helix at the loop site
by berk » Wed, 2013-05-29 06:00
11
5,936 by rmoretti
Mon, 2014-04-21 06:47
Normal topic how to design a protein complex
by Lindsay » Tue, 2013-11-05 20:24
11
8,368 by Lindsay
Mon, 2014-04-21 06:48
Normal topic InterfaceAnalyzer packstat score = 0.000
by vmc99 » Fri, 2018-11-16 11:30
11
3,278 by SenyorDrew
Wed, 2019-06-12 14:10
Normal topic CryoEM model refinement with covalent conjugated prosthetic Phosphopantetheine carrying acyl group
by ZhijunW » Thu, 2020-09-03 18:36
11
1,184 by matteoferla
Sat, 2020-09-12 03:02
Normal topic -dock_pert problem
by mahajanr » Mon, 2010-07-19 15:45
11
6,591 by weitzner
Mon, 2014-04-21 06:47
Normal topic type of docking
by rohi » Mon, 2020-07-06 06:55
11
1,657 by rohi
Sun, 2020-07-26 17:03
Normal topic What is the general protocol for antibody-antigen docking without the native antibody-antigen structures?
by Sunyp_IM » Sun, 2017-08-13 05:42
11
4,050 by smlewis
Tue, 2017-08-29 08:56
Normal topic Is it possible to do Abinitio folding from a linear structure.?
by monos_morpheus » Sat, 2011-04-16 09:13
11
6,231 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic B1_SampleSegment1.sh from RosettaES tutorial crashes
by ab » Tue, 2017-07-04 08:42
12
4,681 by brandon.frenz
Sat, 2017-07-08 13:49
Normal topic make_fragment.pl Error!
by Apiwat » Sat, 2014-02-15 13:35
12
9,005 by Apiwat
Tue, 2014-03-11 09:42
Normal topic Why are all source codes .gz and not .tgz
by jasnyderjr » Tue, 2016-12-20 21:23
12
5,524 by smlewis
Thu, 2016-12-22 13:11
Normal topic Docking an iron atom to a peptide
by buzb » Wed, 2011-01-26 09:49
12
9,279 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error when running FRAGMENT generation
by phanvy » Sat, 2014-09-20 17:53
12
8,496 by rmoretti
Mon, 2014-10-06 16:50
Normal topic Anyone here knows what is the protocol capture archive???????!!
by MajorID » Thu, 2011-06-02 01:50
12
7,990 by rmoretti
Fri, 2015-04-24 12:15
Normal topic I'm a total beginner to Rosetta 3.2 and there are no tutorials for me to follow. Can someone help.? =)
by monos_morpheus » Wed, 2011-02-02 08:11
12
7,180 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic fixbb minimize sidechains with symmetric pose - recompile?
by Anonymous » Wed, 2012-08-22 06:14
13
6,750 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic lysine-aspartate isopeptide bond
by matteoferla » Tue, 2016-11-01 10:54
13
6,738 by ablakely7
Wed, 2019-09-11 15:33
Normal topic minirosetta segmentation fault
by sabine » Wed, 2013-12-11 13:08
13
10,697 by rmoretti
Tue, 2014-11-11 13:56
Normal topic Ab Initio Modelling of Protein with Small-Molecule Cofactor
by jurkm » Thu, 2011-03-10 06:56
13
10,144 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ERROR: Assertion Fdensity.u2 and Fdensity.u3 failed
by ahmadkhalifa » Wed, 2017-12-06 07:38
13
3,876 by brandon.frenz
Thu, 2018-03-08 09:28
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