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Rosetta++ - General
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READ ME FIRST by rmoretti » Fri, 2015-09-04 15:23 |
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4,149 |
by rmoretti Tue, 2017-06-20 08:48 |
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multigraft design by spraha » Wed, 2012-01-11 07:57 |
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35,114 |
by Sergey Menis Mon, 2014-04-21 06:47 |
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clustering_decoy by icb_bio » Thu, 2008-05-08 18:34 |
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10,996 |
by kosa Mon, 2014-04-21 06:47 |
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How does Rosetta calculate rms? by rwn » Thu, 2008-05-15 07:41 |
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17,688 |
by rmoretti Tue, 2014-10-14 08:05 |
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To apply distance constraint to MULTIPLE residue pairs, what's the format? by shirleyzheng » Mon, 2009-04-06 10:24 |
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11,400 |
by wtscrystal Mon, 2014-04-21 06:47 |
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How to reconstruct full atom structure from silent file by kosa » Mon, 2008-06-23 07:25 |
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7,232 |
by yiliu Mon, 2014-04-21 06:47 |
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make_fragment by icb_bio » Tue, 2008-05-06 22:12 |
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8,248 |
by aork Mon, 2014-04-21 06:47 |
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Dunbrack rotamer energy term... by tsjain » Mon, 2011-06-13 15:19 |
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11,259 |
by qlj Mon, 2014-04-21 06:47 |
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modelling loops and inserted domains by danzinho » Fri, 2009-01-16 02:14 |
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7,776 |
by wenchangyu2008 Mon, 2014-04-21 06:47 |
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disulfid bonds by blaumbaer » Wed, 2008-04-30 10:21 |
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7,729 |
by khorvash Thu, 2017-01-19 15:05 |
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random seed by kosa » Thu, 2008-05-08 03:11 |
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8,865 |
by rmoretti Tue, 2017-06-20 08:47 |
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Increase compactness of decoys by kosa » Sat, 2008-06-21 12:47 |
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4,749 |
by kosa Mon, 2014-04-21 06:47 |
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Compiling Rosetta on Intel Macs running Leopard (OS X 10.5) by pager2 » Tue, 2008-07-08 11:59 |
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15,236 |
by rmoretti Thu, 2014-06-05 11:17 |
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Can not build the parallel version of rosetta-2.3.1 (the SnugDock). Help!! by ice_flame » Fri, 2011-11-11 07:53 |
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5,540 |
by ice_flame Mon, 2014-04-21 06:47 |
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RosettaDock with loop rebuild HOWTO ? by lcavallo » Thu, 2009-06-04 09:12 |
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5,704 |
by mchldln Mon, 2014-04-21 06:47 |
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Does rosetta 3.3 have different energy terms from 2.3 (fixbb design) by Lindsay » Mon, 2012-07-16 13:12 |
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6,016 |
by smlewis Mon, 2014-04-21 06:47 |
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question about file: cluster_info_silent by admin » Fri, 2008-04-18 15:19 |
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4,262 |
by ndousis Mon, 2014-04-21 06:47 |
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RosettaDesign parameters by gbeckham » Tue, 2008-07-01 18:03 |
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4,540 |
by yiliu Mon, 2014-04-21 06:47 |
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the energy terms in fixbb by tianbu » Sun, 2012-07-29 12:48 |
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6,703 |
by tianbu Mon, 2014-04-21 06:47 |
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make_fragments by ctaylor » Mon, 2009-09-21 12:42 |
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6,008 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta doesn't read the starting structure - solved by Bob3k » Fri, 2009-02-06 02:00 |
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6,739 |
by Bob3k Mon, 2014-04-21 06:47 |
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Rosetta3 - docking_protocol - fold_tree and number of residues problem by dsept » Sat, 2009-09-05 11:32 |
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7,355 |
by sid Mon, 2014-04-21 06:47 |
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how do you test if your rosetta.xxx is indeed correctly built? by tru » Thu, 2008-04-24 08:04 |
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5,734 |
by tru Mon, 2014-04-21 06:47 |
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Installation report and instructions: Ubuntu 8.10 64 bit by TamirEr » Mon, 2009-01-12 11:18 |
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7,279 |
by chinhsutran Mon, 2014-04-21 06:47 |
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RosettaDesign (each run produces the same sequence with many GLY residues ) by shirleyzheng » Wed, 2009-05-13 10:25 |
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6,328 |
by shirleyzheng Mon, 2014-04-21 06:47 |
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ERROR:: Can't find starting structure: ../prepack/test.pdb by tru » Thu, 2008-04-24 07:25 |
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5,662 |
by yiliu Mon, 2014-04-21 06:47 |
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Loop modeling with multiple chains by sonyadave » Tue, 2008-05-06 13:44 |
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4,832 |
by sonyadave Mon, 2014-04-21 06:47 |
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Build Problem on 64 bit Gentoo by spetzjoe » Thu, 2008-11-20 12:24 |
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5,054 |
by dberkholz Mon, 2014-04-21 06:47 |
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how to change the parameter weight in rosetta 2.3 by Lindsay » Tue, 2012-04-24 14:09 |
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5,018 |
by Lindsay Mon, 2014-04-21 06:47 |
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Does any paper descript rosetta2.3's scoring function (fixbb ) by tianbu » Fri, 2012-07-27 14:50 |
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5,087 |
by smlewis Mon, 2014-04-21 06:47 |
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weighted constraints by mintseris » Mon, 2014-02-03 15:24 |
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4,652 |
by rmoretti Thu, 2014-02-06 09:06 |
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How to model a protein that dimerizes to a small molecule? This topic has been moved to "Rosetta 3 - General " (View topic) |
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N-terminus and loops by sreiling » Thu, 2009-01-29 08:27 |
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4,384 |
by vanita Mon, 2014-04-21 06:47 |
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RosettaDock: questions about Fab file and constraints by lucasimonelli » Thu, 2008-10-09 05:57 |
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3,593 |
by yiliu Mon, 2014-04-21 06:47 |
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producing good idealized structures by lesi » Thu, 2009-06-18 15:06 |
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5,196 |
by sid Mon, 2014-04-21 06:47 |
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how do I repeat relax runs and get scoring functions at every state by Temsiri » Mon, 2008-11-03 19:42 |
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3,405 |
by vanita Mon, 2014-04-21 06:47 |
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how to get around no sequence for de novo design? by neilcifer » Mon, 2008-10-06 15:01 |
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3,686 |
by huxz Mon, 2014-04-21 06:47 |
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about SASA interpretation by tarajano » Fri, 2008-06-20 10:17 |
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3,646 |
by tarajano Mon, 2014-04-21 06:47 |
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flexible backbone design with multiple chains by lesi » Thu, 2009-06-18 14:57 |
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4,470 |
by lqzhang Mon, 2014-04-21 06:47 |
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About the code.What's the difference between ****.fwd.hh and ****.hh by Run » Sat, 2013-07-20 23:51 |
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5,027 |
by rmoretti Mon, 2014-04-21 06:48 |
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Single or multiple decoys from relax? by kosa » Thu, 2008-05-15 06:11 |
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2,933 |
by kosa Mon, 2014-04-21 06:47 |
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Building a PDB from a set of internal coordinates. by jcminerlanl » Mon, 2017-03-06 09:47 |
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3,603 |
by rbhatta8 Tue, 2017-03-07 07:22 |
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what's the meaning of the Ab-Ag Dock with RosettaDock by huairpan » Thu, 2009-10-15 23:26 |
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4,438 |
by huairpan Mon, 2014-04-21 06:47 |
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How to allow rosetta to recognize the ASP and protonated ASP? by Jeffrey_Chen » Mon, 2014-03-24 00:41 |
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2,763 |
by Jeffrey_Chen Tue, 2014-03-25 23:29 |
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Rosetta for Windows by jp » Wed, 2008-04-23 23:38 |
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7,969 |
by yiliu Mon, 2014-04-21 06:47 |
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Missing make options for 64-bit platforms in RosettaBundle-2.3.0.gz by dean » Fri, 2008-06-06 04:17 |
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2,819 |
by rmosca Mon, 2014-04-21 06:47 |
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Ab Initio by vamsi » Fri, 2008-11-21 12:42 |
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3,816 |
by rmoretti Mon, 2014-04-21 06:47 |
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all-atom modelling and clustering by danzinho » Fri, 2008-07-25 02:02 |
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2,771 |
by danzinho Mon, 2014-04-21 06:47 |
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AB INITIO WITH METALLOPROTEIN by kaue » Sat, 2012-06-16 04:25 |
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3,914 |
by kaue Mon, 2014-04-21 06:47 |
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running multiple instances of rosetta by yiliu » Thu, 2008-01-10 08:39 |
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3,200 |
by kosa Mon, 2014-04-21 06:47 |
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command lines for rebuilding-and-refinement protocol by Temsiri » Fri, 2008-08-29 08:54 |
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2,882 |
by Temsiri Mon, 2014-04-21 06:47 |
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Interpreting Clustering Results by PaulaBanks » Sat, 2013-06-08 23:41 |
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5,358 |
by rmoretti Mon, 2014-04-21 06:48 |
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membrane protein docking by angel » Thu, 2008-10-23 08:50 |
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3,393 |
by yiliu Mon, 2014-04-21 06:47 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density This topic has been moved to "Rosetta 3 - General " (View topic) |
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Pose Docking by AndrewBworth » Sat, 2009-08-08 12:50 |
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4,277 |
by matchf Mon, 2014-04-21 06:47 |
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Linux Distros and Settings by Brev » Tue, 2008-08-19 17:48 |
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3,853 |
by sdarnell Mon, 2014-04-21 06:47 |
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ab initio with restraint by Elin » Thu, 2008-08-28 18:42 |
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2,945 |
by Elin Mon, 2014-04-21 06:47 |
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-no_filter flag in docking by banshee » Tue, 2013-05-28 11:58 |
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3,939 |
by banshee Mon, 2014-04-21 06:47 |
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Why should I do prepack before docking? by ice_flame » Wed, 2011-11-16 04:12 |
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4,064 |
by ice_flame Mon, 2014-04-21 06:47 |
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Docking with pose_loops - frustration! by mchldln » Wed, 2009-06-10 08:44 |
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3,672 |
by mchldln Mon, 2014-04-21 06:47 |
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program not terminating... by atoler » Wed, 2009-02-25 06:40 |
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3,453 |
by atoler Mon, 2014-04-21 06:47 |
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loop modeling with KIC mode by wenchangyu2008 » Tue, 2010-03-02 06:05 |
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4,681 |
by wenchangyu2008 Mon, 2014-04-21 06:47 |
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/usr/bin/ld: cannot find -lmpi_cxx by anusmita_sahoo » Fri, 2010-05-07 10:41 |
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14,038 |
by rlwoltz Mon, 2014-04-21 06:47 |
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Can Rosetta Antibody build a good model for a new sequence?? by ice_flame » Fri, 2011-04-22 17:56 |
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5,630 |
by Sherpaman Mon, 2014-04-21 06:47 |
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rosetta reproducibility by lcavallo » Thu, 2009-03-05 02:55 |
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3,943 |
by lcavallo Mon, 2014-04-21 06:47 |
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terminus capping by mbellows » Wed, 2009-10-07 11:16 |
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3,739 |
by mboggara Mon, 2014-04-21 06:47 |
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cluster.pl fails to extract best centers by rmosca » Tue, 2008-12-02 03:10 |
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2,774 |
by yiliu Mon, 2014-04-21 06:47 |
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fragment generation - local vs server by danzinho » Fri, 2008-07-25 02:09 |
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2,367 |
by yiliu Mon, 2014-04-21 06:47 |
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How do you refine the native structure? by yiliu » Thu, 2008-01-10 08:40 |
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2,420 |
by yiliu Mon, 2014-04-21 06:47 |
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compilation failure in 64-bit mode linux system by kw8cr » Wed, 2010-02-24 22:21 |
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4,322 |
by zdn3023 Mon, 2014-04-21 06:47 |
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docking search: first residue centroids, then full atom? by pshannon » Wed, 2008-09-03 15:46 |
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2,466 |
by yiliu Mon, 2014-04-21 06:47 |
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Rosetta-2.3.0 build on MAC OSX 10.5.8 by joseph » Wed, 2010-09-08 10:26 |
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4,957 |
by smlewis Mon, 2014-04-21 06:47 |
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symmetric design in rosetta3 by sdh » Wed, 2009-07-08 07:30 |
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3,207 |
by smlewis Mon, 2014-04-21 06:47 |
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Why a paralleled Rosetta perform like a normal one? by ice_flame » Mon, 2011-03-28 22:23 |
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4,666 |
by smlewis Mon, 2014-04-21 06:47 |
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de novo modeling of a dimer by kosa » Wed, 2009-08-19 05:55 |
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3,410 |
by yangshen Mon, 2014-04-21 06:47 |
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disulphides are only sometimes formed by danzinho » Mon, 2009-01-19 08:42 |
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2,740 |
by yiliu Mon, 2014-04-21 06:47 |
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ulfated tyrosine in Rosetta by yiliu » Thu, 2008-01-10 08:29 |
1 |
2,287 |
by yiliu Mon, 2014-04-21 06:47 |
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Flexible-backbone Rosetta design (partial flexibility) by shirleyzheng » Mon, 2009-05-11 11:27 |
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2,959 |
by marthapedraza Mon, 2014-04-21 06:47 |
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multiple_processor by yiliu » Thu, 2008-01-10 08:47 |
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2,208 |
by yiliu Mon, 2014-04-21 06:47 |
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Re orienting files from the PDB. by AndrewBworth » Thu, 2009-06-25 19:09 |
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2,983 |
by vanita Mon, 2014-04-21 06:47 |
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test.fasta and test.dat files are not available in Rosetta2.3.0 by suj88 » Mon, 2009-03-23 17:14 |
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2,919 |
by yiliu Mon, 2014-04-21 06:47 |
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extract pdb file from silent file .out by anusmita_sahoo » Sun, 2010-05-16 23:50 |
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3,833 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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comparing 2 docking sites : howto ? by lcavallo » Mon, 2009-07-27 13:38 |
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3,094 |
by sid Mon, 2014-04-21 06:47 |
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Fragment files for incomplet protein by globalcoco » Sat, 2009-04-18 05:16 |
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2,836 |
by vanita Mon, 2014-04-21 06:47 |
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GTP-bound proteins by mbh » Thu, 2008-11-13 11:35 |
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2,202 |
by yiliu Mon, 2014-04-21 06:47 |
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Barcode constraint file by rkhayat » Fri, 2009-05-15 16:02 |
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2,854 |
by davidk Mon, 2014-04-21 06:47 |
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Cluster is down.. by AndrewBworth » Wed, 2009-06-17 10:10 |
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3,004 |
by vanita Mon, 2014-04-21 06:47 |
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Prepacking structures using RosettaDock on a Windows platform by suj88 » Fri, 2009-03-13 14:20 |
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3,989 |
by suj88 Mon, 2014-04-21 06:47 |
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Rosetta 2.1.1 troubleshooting by yiliu » Thu, 2008-01-10 08:51 |
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2,653 |
by yiliu Mon, 2014-04-21 06:47 |
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cluster_info_silent.out GLIB problem by Jungi » Wed, 2009-07-08 01:35 |
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3,134 |
by Jungi Mon, 2014-04-21 06:47 |
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how long does it take? by Piter_ » Thu, 2008-05-15 06:10 |
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2,139 |
by Elin Mon, 2014-04-21 06:47 |
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Examples in RosettaDock tutorials by yiliu » Thu, 2008-01-10 08:27 |
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2,718 |
by yiliu Mon, 2014-04-21 06:47 |
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sequence variability in rosetta design by sdh » Thu, 2009-10-15 03:44 |
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3,074 |
by smlewis Mon, 2014-04-21 06:47 |
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fragments library for starting structures having multiple chains by mdyini » Thu, 2009-06-11 10:34 |
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3,330 |
by mdyini Mon, 2014-04-21 06:47 |
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Compilation Error 1 after 'make gcc' command by suj88 » Wed, 2009-02-25 14:24 |
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6,213 |
by Bob3k Mon, 2014-04-21 06:47 |
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rg cutoff by yiliu » Thu, 2008-01-10 08:46 |
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2,257 |
by yiliu Mon, 2014-04-21 06:47 |
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Piecing together multiple domains by AndrewBworth » Mon, 2009-06-22 14:24 |
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3,107 |
by vanita Mon, 2014-04-21 06:47 |
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Alanine Scanning of UbcH7- E6AP Interface by suj88 » Mon, 2009-03-23 15:58 |
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4,170 |
by kristiankrantz Mon, 2014-04-21 06:47 |
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Computing ddg_binding by hetu » Mon, 2008-09-29 19:11 |
1 |
2,609 |
by yiliu Mon, 2014-04-21 06:47 |
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build error by MS Visual studio 2008 by jarod » Fri, 2010-05-07 22:45 |
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5,378 |
by jarod Mon, 2014-04-21 06:47 |
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