Does Rosetta have a separate refinement function（I need to input a PDB and output a PDB）? I haven't found a relevant application.
Thanks for help
Rosetta is almost nothing but refinement applications? Ab initio is at this point a niche use.
I think you are trying to ask for relax: https://www.rosettacommons.org/docs/latest/application_documentation/structure_prediction/relax
I think this is different from the program I saw in this paper——“High-accuracy refinement using Rosetta in CASP13”. Do you have the program in this article?