# Interface Analyzer with Glycans

2 posts / 0 new
Interface Analyzer with Glycans
#1

Hello all,

Is it possible to run InterfaceAnalyzer with a structure with Glycans? Everytime I apply the InterfaceAnalyzerMover on my structure I get a segmentation fault. If I just delete the carbohydrates it works just fine. The pose has been processed with all of the usual flags(below). Is there some trick to using glycans and InterfaceAnalyzerMover or can someone point me in the right direction? Thanks so much.

Drew

-ignore_unrecognized_res
-ignore_zero_occupancy false
-include_sugars
-alternate_3_letter_codes pdb_sugar
-auto_detect_glycan_connections
-write_glycan_pdb_codes

Category:
Post Situation:
Tue, 2020-06-09 20:06
drewaight

Are the glycans part of the same chain or chain group as they are attached to in the interface definition (the AB_C like line) ?

Wed, 2020-07-01 05:30
matteoferla