You are here
PyRosetta - General
Log in to post new content in the forum.
| Topic / Topic starter | Replies | Views |
Last post |
|
|---|---|---|---|---|
|
Sticky:
FAQ by admin » Mon, 2010-08-30 01:38 |
1 |
19,014 |
by Sergey Fri, 2015-09-04 16:14 |
|
|
pyrosetta die slow by Eden » Sun, 2021-06-13 00:05 |
2 |
63 |
by Eden Mon, 2021-06-14 23:10 |
|
|
FastRelax results in bad structure by Eden » Mon, 2021-04-26 08:39 |
2 |
181 |
by Eden Sun, 2021-06-13 00:14 |
|
|
Atom-wise energy terms from nearest N-neighbors by jasiozaucha » Thu, 2021-03-25 14:49 |
3 |
236 |
by matteoferla Fri, 2021-05-28 02:41 |
|
|
RosettaModel blueprint for PyRosetta by bbrown11 » Tue, 2015-03-03 13:53 |
3 |
2,557 |
by matteoferla Thu, 2021-04-29 06:30 |
|
|
Pyrosetta score protein structures with missing atoms in sidechain by xuezhi » Fri, 2021-04-09 13:33 |
1 |
126 |
by matteoferla Sat, 2021-04-10 07:18 |
|
|
Best way to store a pose by Pyrosetta for Pyrosetta by matteoferla » Wed, 2021-04-07 06:50 |
0 |
113 |
by matteoferla Wed, 2021-04-07 06:50 |
|
|
Protocol for adding/mutating non-canonical AA by joeri » Thu, 2021-03-25 08:14 |
1 |
168 |
by matteoferla Tue, 2021-03-30 08:20 |
|
|
Protocol for adding/mutating non-canonical AA by joeri » Thu, 2021-03-25 08:14 |
2 |
184 |
by vmulligan Mon, 2021-03-29 10:39 |
|
|
Calculate TM-score by nasim.soltani58 » Fri, 2021-03-26 16:50 |
1 |
205 |
by rmoretti Mon, 2021-03-29 06:53 |
|
|
How to relax glycans after glycosylating sites on a pose? by sdtruong » Mon, 2021-03-22 09:44 |
2 |
147 |
by sdtruong Mon, 2021-03-22 17:05 |
|
|
cartesian delta delta G by patcD » Wed, 2021-02-10 01:46 |
3 |
473 |
by j0kaso Wed, 2021-03-03 17:37 |
|
|
Alternatives to DockMCMProtocol by swirt » Thu, 2021-01-28 17:37 |
4 |
410 |
by swirt Thu, 2021-02-25 21:54 |
|
|
Individual Residue Energy by Peik » Fri, 2021-02-19 10:13 |
2 |
263 |
by Peik Fri, 2021-02-19 10:30 |
|
|
Error with importing the pdb file by nasim.soltani58 » Fri, 2020-12-18 22:46 |
1 |
299 |
by matteoferla Tue, 2021-01-05 04:05 |
|
|
How do I insert or delete residues into specific locations? by Mgerber@mail.yu.edu » Sun, 2020-12-20 15:03 |
1 |
261 |
by matteoferla Tue, 2021-01-05 03:53 |
|
|
Different types of MinMover by nasim.soltani58 » Sun, 2020-12-20 11:44 |
2 |
374 |
by nasim.soltani58 Tue, 2020-12-22 13:37 |
|
|
Using pyrosetta to generate quaternary structure of protein by nasim.soltani58 » Thu, 2020-11-19 17:35 |
5 |
684 |
by nasim.soltani58 Tue, 2020-12-08 22:45 |
|
|
Assesing the docking by nasim.soltani58 » Sat, 2020-12-05 21:19 |
2 |
384 |
by nasim.soltani58 Tue, 2020-12-08 22:44 |
|
|
How do you combine two .pdb protein structure files of the same protein? by nasim.soltani58 » Sun, 2020-11-22 23:14 |
4 |
729 |
by nasim.soltani58 Tue, 2020-12-08 22:44 |
|
|
Extending Pyrosetta toturials for docking by adding constraints by nasim.soltani58 » Thu, 2020-11-26 13:16 |
1 |
286 |
by matteoferla Wed, 2020-12-02 13:49 |
|
|
how do i unding properly? by patcD » Fri, 2020-11-20 00:38 |
2 |
415 |
by matteoferla Fri, 2020-11-20 07:47 |
|
|
Structure not changing after pose.set_phi by publicclass » Thu, 2020-11-05 09:34 |
0 |
238 |
by publicclass Thu, 2020-11-05 09:34 |
|
|
WindowsError: [Error 32] by jetu20 » Sun, 2020-10-11 21:02 |
0 |
279 |
by jetu20 Sun, 2020-10-11 21:02 |
|
|
Custom Constraints by jinli711 » Wed, 2020-07-15 15:22 |
2 |
596 |
by matteoferla Fri, 2020-10-09 05:20 |
|
|
Gradient Descent by nasim.soltani58 » Thu, 2020-10-01 16:02 |
3 |
680 |
by vmulligan Tue, 2020-10-06 15:13 |
|
|
"Server Could Not Be Reached" although I have an Internet connection by epi89 » Mon, 2020-09-28 21:32 |
1 |
373 |
by smlewis Tue, 2020-09-29 12:00 |
|
|
trRosetta modelling with a ligand by ShiranBZ » Tue, 2020-08-25 01:44 |
0 |
487 |
by ShiranBZ Tue, 2020-08-25 01:44 |
|
|
Suggestion: setting Sphinx documentation to not skip __init__ by matteoferla » Mon, 2020-08-24 09:02 |
0 |
415 |
by matteoferla Mon, 2020-08-24 09:02 |
|
|
Compile C++ Rosetta to Pyrosetta by michelleqyh » Fri, 2020-08-21 08:44 |
0 |
242 |
by michelleqyh Fri, 2020-08-21 08:44 |
|
|
How to create an ObjexxFCL FArray? by matteoferla » Tue, 2020-08-18 03:22 |
0 |
256 |
by matteoferla Tue, 2020-08-18 03:22 |
|
|
Calling SnugDock from PyRosetta by shruthi.murali » Wed, 2020-07-29 15:10 |
3 |
774 |
by matteoferla Fri, 2020-08-07 03:29 |
|
|
Generating Atom Pair Constraints by Peik » Wed, 2020-08-05 15:39 |
3 |
661 |
by Peik Thu, 2020-08-06 11:50 |
|
|
How can I insert my variable length fragmrnts library into pyrosetta? by michelleqyh » Tue, 2020-08-04 07:26 |
0 |
277 |
by michelleqyh Tue, 2020-08-04 07:26 |
|
|
Best Way to Append/Insert Residue by jaulicino » Tue, 2020-07-21 10:24 |
3 |
969 |
by matteoferla Sat, 2020-07-25 03:52 |
|
|
Segfault when loading scorefxn() and load_from_pdb() by mm » Wed, 2020-07-22 03:00 |
0 |
274 |
by mm Wed, 2020-07-22 03:02 |
|
|
Adding a residue type to a residue type set by matteoferla » Wed, 2020-07-08 08:14 |
2 |
748 |
by matteoferla Fri, 2020-07-10 02:20 |
|
|
ERROR: unrecognized element Rp when using pose_from_pdb by johnnytam100 » Thu, 2020-07-09 02:53 |
3 |
819 |
by rmoretti Thu, 2020-07-09 08:35 |
|
|
Interface Analyzer with Glycans by drewaight » Tue, 2020-06-09 20:06 |
1 |
494 |
by matteoferla Wed, 2020-07-01 05:30 |
|
|
Python3.8 release for Mac download is a dead link by noahC_noahDo » Fri, 2020-06-26 18:20 |
0 |
326 |
by noahC_noahDo Fri, 2020-06-26 18:20 |
|
|
How to fold-and-dock in PyRosetta? by sarah_b » Thu, 2020-05-14 02:37 |
0 |
396 |
by sarah_b Thu, 2020-05-14 02:37 |
|
|
Affinity optimization with GreedyOptMutationMover by wentlewi » Thu, 2020-05-07 08:29 |
0 |
350 |
by wentlewi Thu, 2020-05-07 12:33 |
|
|
pose_from_rcsb error by criss.hartzell » Wed, 2020-04-22 15:12 |
1 |
605 |
by matteoferla Thu, 2020-04-30 12:04 |
|
|
Pyrosetta imported after rdkit by matteoferla » Sun, 2020-03-01 02:38 |
0 |
482 |
by matteoferla Sun, 2020-03-01 02:38 |
|
|
Rosetta get_fa_scorefxn() by israeldesta » Thu, 2019-10-31 10:18 |
3 |
1,797 |
by jadolfbr Thu, 2019-11-14 15:33 |
|
|
Modeling small molecules by iGemBoulder » Wed, 2019-09-18 11:53 |
2 |
950 |
by rmoretti Wed, 2019-09-18 14:24 |
|
|
Resfile Error by ac.research » Wed, 2019-07-17 13:25 |
3 |
1,793 |
by vmulligan Fri, 2019-07-26 15:08 |
|
|
Designating Fold Tree Edges as Flexible or Rigid by nleroy » Tue, 2019-07-23 11:34 |
3 |
1,085 |
by smlewis Tue, 2019-07-23 13:27 |
|
|
PyMOLMover object has no attribute 'link' by nleroy » Mon, 2019-07-22 07:51 |
0 |
507 |
by nleroy Mon, 2019-07-22 07:51 |
|
|
Classic Relax by iGemBoulder » Fri, 2019-06-28 09:24 |
2 |
1,040 |
by sheehajh Wed, 2019-07-17 12:43 |
|
|
PyRosetta on a HPC by ac.research » Thu, 2019-03-14 02:00 |
1 |
817 |
by rmoretti Wed, 2019-07-10 10:17 |
|
|
set_torsion_angle error by yijietseng » Tue, 2019-07-09 12:43 |
2 |
883 |
by yijietseng Wed, 2019-07-10 09:28 |
|
|
Score bonus to hbond by yijietseng » Fri, 2019-07-05 12:28 |
1 |
668 |
by rmoretti Tue, 2019-07-09 09:42 |
|
|
Question about the error when using pyrosetta.distributed.io by cuiyoutian » Sun, 2019-05-19 00:54 |
1 |
929 |
by rmoretti Mon, 2019-06-24 12:54 |
|
|
ΔG Calculation with PyRosetta by Sandra » Tue, 2019-05-21 00:26 |
1 |
774 |
by rmoretti Mon, 2019-06-24 12:47 |
|
|
Residue is not compatible with cutpoints by iGemBoulder » Thu, 2019-06-06 08:57 |
2 |
1,112 |
by iGemBoulder Tue, 2019-06-11 08:36 |
|
|
individual residue score by yijietseng » Wed, 2019-05-29 09:59 |
2 |
970 |
by yijietseng Fri, 2019-05-31 12:21 |
|
|
Relax with constraints by yijietseng » Tue, 2019-05-07 11:16 |
2 |
1,364 |
by yijietseng Wed, 2019-05-22 09:54 |
|
|
Movers for unspecified DoF by tfobe » Wed, 2019-04-17 17:30 |
2 |
993 |
by tfobe Mon, 2019-05-20 16:05 |
|
|
Error when trying to import 'get_secstruct' by quantumnumber » Thu, 2019-04-11 03:50 |
4 |
2,415 |
by quantumnumber Fri, 2019-05-10 02:25 |
|
|
Motif Graft Mover error by ac.research » Tue, 2019-03-26 13:25 |
1 |
934 |
by rmoretti Thu, 2019-05-09 15:56 |
|
|
Adding Custom AtomTypes to Pyrosetta by garrettameek » Wed, 2019-03-13 15:06 |
1 |
789 |
by rmoretti Thu, 2019-05-09 15:06 |
|
|
DockingHighResLegacy repacks all sidechains on first apply(), interface sidechains on subsequent apply() by msellers » Wed, 2012-02-22 22:46 |
4 |
3,252 |
by rmoretti Thu, 2019-05-09 15:03 |
|
|
Need help figuring out the meaning and cause of an error by AleksanderK » Fri, 2019-05-03 11:02 |
1 |
807 |
by rmoretti Thu, 2019-05-09 14:32 |
|
|
Error with etable_atom_pair_energies() by yijietseng » Mon, 2019-01-28 14:00 |
2 |
1,560 |
by yijietseng Tue, 2019-05-07 11:02 |
|
|
Noob question about optimizing a pose by AleksanderK » Fri, 2019-04-26 10:49 |
3 |
1,274 |
by AleksanderK Fri, 2019-05-03 10:57 |
|
|
newbie question re pose syntax by Amy F » Mon, 2019-04-15 12:50 |
10 |
3,705 |
by jadolfbr Wed, 2019-04-24 10:12 |
|
|
Error when using "generate_resfile_from_pose" function by zhangying1990 » Fri, 2019-01-25 00:45 |
1 |
1,153 |
by zhangying1990 Fri, 2019-02-01 00:44 |
|
|
why two packing setting return different energy? by zhangying1990 » Wed, 2019-01-30 00:18 |
2 |
1,169 |
by zhangying1990 Fri, 2019-02-01 00:30 |
|
|
Changing the membrane Thickness (THKN) by jlapin » Mon, 2018-11-12 06:32 |
1 |
912 |
by ralford Wed, 2018-12-19 03:20 |
|
|
Output several poses in a silent file by SenyorDrew » Tue, 2018-03-20 07:12 |
1 |
1,071 |
by Martin Floor Tue, 2018-12-11 05:43 |
|
|
New Python 3.7 by ac.research » Wed, 2018-08-15 07:00 |
5 |
2,785 |
by MNP1986 Mon, 2018-12-03 04:02 |
|
|
Reading poses from silent file that need a params file by Martin Floor » Mon, 2018-08-13 12:25 |
2 |
1,794 |
by Martin Floor Mon, 2018-08-27 10:51 |
|
|
Alternative to MinMover by MNP1986 » Tue, 2018-07-31 02:18 |
2 |
1,590 |
by MNP1986 Tue, 2018-07-31 23:50 |
|
|
RosettaDesign Result Evaluation by ac.research » Tue, 2018-06-05 18:45 |
2 |
1,443 |
by ac.research Wed, 2018-07-18 03:50 |
|
|
Folding Video by ac.research » Sat, 2018-05-12 09:19 |
1 |
1,045 |
by rmoretti Sat, 2018-06-30 02:38 |
|
|
RemodelMover() and the blueprint file by ac.research » Wed, 2018-06-27 03:55 |
1 |
1,154 |
by rmoretti Sat, 2018-06-30 02:38 |
|
|
GenericMonteCarloMover accept/reject moves by ac.research » Fri, 2018-06-08 06:04 |
1 |
1,082 |
by rmoretti Sat, 2018-06-30 02:37 |
|
|
Pyrosetta protocol to move protein-peptide docked complex closer to active site. by eduardoftoliveira » Fri, 2018-06-29 02:50 |
0 |
1,191 |
by eduardoftoliveira Fri, 2018-06-29 03:46 |
|
|
Error while converting mol2 to params using molfile_to_params.py by ahmadkhalifa » Thu, 2018-06-14 10:30 |
7 |
3,554 |
by rmoretti Thu, 2018-06-28 12:04 |
|
|
PyMOL Update by ac.research » Tue, 2018-04-10 22:07 |
6 |
2,596 |
by Sergey Tue, 2018-05-15 11:20 |
|
|
Difference between GenericMonteCarloMover() and GenericSimulatedAnnealer() by ac.research » Fri, 2018-05-11 10:37 |
4 |
2,157 |
by ac.research Fri, 2018-05-11 15:46 |
|
|
An issue with GenericMonteCarloMover() by ac.research » Wed, 2018-03-07 13:57 |
13 |
4,891 |
by ac.research Fri, 2018-05-11 10:59 |
|
|
eval_ci_2b() with hydrogen bonds by TensorDuck » Fri, 2018-03-30 14:05 |
2 |
1,536 |
by TensorDuck Mon, 2018-04-02 13:41 |
|
|
cleanATOM() for non-ideal amino acids by ac.research » Thu, 2018-03-29 07:50 |
0 |
803 |
by ac.research Thu, 2018-03-29 07:50 |
|
|
Fix corrupted Backbone by ac.research » Mon, 2018-03-05 12:48 |
7 |
3,165 |
by ac.research Tue, 2018-03-13 21:36 |
|
|
ΔΔG Calculation of a Mutation with PyRosetta by akaashvenkat » Fri, 2018-03-09 01:44 |
7 |
4,939 |
by Sazhnyev Tue, 2018-03-13 15:55 |
|
|
Sample dihedral database by tiagogomes89 » Mon, 2018-03-12 04:28 |
2 |
1,271 |
by tiagogomes89 Mon, 2018-03-12 10:01 |
|
|
generate_nonstandard_residue_set() takes exactly 2 arguments (1given) by yanghaobjordan » Mon, 2018-01-29 18:59 |
1 |
1,369 |
by rmoretti Tue, 2018-01-30 06:29 |
|
|
"Server Could Not Be Reached" although I have an Internet connection by aushawxian » Sun, 2018-01-28 20:21 |
1 |
1,150 |
by walcob Mon, 2018-01-29 11:22 |
|
|
BluePrintBDRMover set_atom_type error by ac.research » Sat, 2017-12-09 02:16 |
3 |
1,906 |
by rmoretti Sat, 2017-12-16 14:06 |
|
|
Minimization not changing jump edge vector length by bio_james » Tue, 2017-12-12 09:32 |
1 |
1,007 |
by rmoretti Sat, 2017-12-16 10:47 |
|
|
EnergyMethodCreator error when writing custom energy method by furybubu » Mon, 2017-12-11 15:46 |
2 |
1,457 |
by furybubu Tue, 2017-12-12 10:04 |
|
|
Score Function with Constraints by ac.research » Fri, 2017-07-28 06:41 |
6 |
4,372 |
by ac.research Sat, 2017-12-09 02:15 |
|
|
Relax with constraints in PyRosetta by ac.research » Tue, 2017-11-21 10:17 |
1 |
1,963 |
by rmoretti Sat, 2017-12-09 01:50 |
|
|
Docking between peptide and lipid-biayer by sprinkle166 » Thu, 2017-10-26 08:35 |
1 |
1,137 |
by rmoretti Fri, 2017-12-01 10:34 |
|
|
Determine residues where Backrub Mover is applied by jferrie » Fri, 2017-10-27 08:19 |
1 |
997 |
by rmoretti Fri, 2017-12-01 10:25 |
|
|
Passing a dictionary from pyrosetta to rosetta by SenyorDrew » Mon, 2017-11-13 11:33 |
1 |
985 |
by rmoretti Fri, 2017-12-01 10:10 |
|
|
rosetta.core.pack.pack_rotamers_setup(pose, score_fxn, task_design, rotsets) not working by tschiex » Sun, 2017-11-05 08:29 |
0 |
819 |
by tschiex Sun, 2017-11-05 08:29 |
|
|
Using ref2015 and talaris2014 in the same script by SenyorDrew » Wed, 2017-11-01 10:24 |
2 |
2,531 |
by SenyorDrew Wed, 2017-11-01 10:39 |
Log in to post new content in the forum.
