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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 01:38
1
19,958 by Sergey
Fri, 2015-09-04 16:14
Normal topic "corrupted" small molecules. aromatic rings get distortet during relax
by patcD » Thu, 2022-07-21 04:51
1
573 by rmoretti
Thu, 2022-07-21 07:14
Normal topic 403 on documentation for PyRosetta
by matteoferla » Mon, 2022-06-06 12:19
1
579 by rmoretti
Mon, 2022-06-06 12:35
Normal topic Is this the intended behaviour?
by Ken » Thu, 2022-05-05 14:59
2
668 by Ken
Fri, 2022-05-06 07:03
Normal topic Protein docking with PyRosetta Error!
by Apiwat » Sat, 2014-01-11 23:32
4
4,818 by shivarawat115
Mon, 2022-04-11 16:03
Normal topic How does min_mover work?
by anidude » Fri, 2022-03-04 07:30
1
669 by matteoferla
Sun, 2022-03-20 02:53
Normal topic Atom mapping in RMSD functions
by gkell » Tue, 2022-02-15 15:48
1
430 by rmoretti
Fri, 2022-02-18 10:23
Normal topic Acessing energies terms from energy.show() table
by João Sartori » Mon, 2022-02-07 07:56
2
564 by João Sartori
Wed, 2022-02-09 04:35
Normal topic Pose is full atom and mover expects centroid, how do I handle it the best?
by hlinn » Thu, 2022-01-27 05:55
4
824 by hlinn
Tue, 2022-02-08 07:23
Normal topic ΔΔG Calculation of a Mutation with PyRosetta
by akaashvenkat » Fri, 2018-03-09 01:44
13
9,143 by matteoferla
Wed, 2022-01-12 01:20
Normal topic any examples of calling SnugDock from pyrosetta?
by antonkulaga » Thu, 2021-12-23 16:13
1
473 by matteoferla
Mon, 2022-01-10 07:14
Normal topic Questions of Cartesian_ddG calculation in PyRosetta
by CKS2001 » Fri, 2022-01-07 01:36
2
701 by CKS2001
Sat, 2022-01-08 02:14
Normal topic Collect data about the modelling
by Roberto » Thu, 2022-01-06 01:43
0
300 by Roberto
Thu, 2022-01-06 01:43
Normal topic Calling SnugDock from PyRosetta
by shruthi.murali » Wed, 2020-07-29 15:10
4
1,900 by antonkulaga
Thu, 2021-12-23 16:07
Normal topic Symmetry breaks due to small structure gaps
by dbiedermann » Mon, 2021-09-20 17:39
0
423 by dbiedermann
Mon, 2021-09-20 17:40
Normal topic Explicit water
This topic has been moved to "Rosetta 3 - General " (View topic)
Normal topic restricted fast relax changes whole structure?
by patcD » Wed, 2021-08-25 02:05
2
965 by patcD
Wed, 2021-09-01 03:30
Normal topic Molfile to params creating invalid params output
by edan » Sun, 2021-08-29 01:54
1
578 by tsztain
Sun, 2021-08-29 11:15
Normal topic Less silly way to get number of iterations of Relax
by matteoferla » Tue, 2021-07-20 07:00
2
793 by matteoferla
Tue, 2021-07-20 13:44
Normal topic How to create an ObjexxFCL FArray?
by matteoferla » Tue, 2020-08-18 03:22
3
1,154 by matteoferla
Thu, 2021-07-08 06:02
Normal topic Hydrogen Bonding Distances and Atom identification
by kmolloy717 » Fri, 2021-06-25 08:15
1
624 by matteoferla
Wed, 2021-06-30 09:02
Normal topic FastRelax results in bad structure
by Eden » Mon, 2021-04-26 08:39
2
1,002 by Eden
Wed, 2021-06-23 01:13
Normal topic pyrosetta die slow
by Eden » Sun, 2021-06-13 00:05
2
846 by Eden
Mon, 2021-06-14 23:10
Normal topic Atom-wise energy terms from nearest N-neighbors
by jasiozaucha » Thu, 2021-03-25 14:49
3
1,130 by matteoferla
Fri, 2021-05-28 02:41
Normal topic RosettaModel blueprint for PyRosetta
by bbrown11 » Tue, 2015-03-03 13:53
3
3,588 by matteoferla
Thu, 2021-04-29 06:30
Normal topic Pyrosetta score protein structures with missing atoms in sidechain
by xuezhi » Fri, 2021-04-09 13:33
1
625 by matteoferla
Sat, 2021-04-10 07:18
Normal topic Best way to store a pose by Pyrosetta for Pyrosetta
by matteoferla » Wed, 2021-04-07 06:50
0
994 by matteoferla
Wed, 2021-04-07 06:50
Normal topic Protocol for adding/mutating non-canonical AA
by joeri » Thu, 2021-03-25 08:14
1
865 by matteoferla
Tue, 2021-03-30 08:20
Normal topic Protocol for adding/mutating non-canonical AA
by joeri » Thu, 2021-03-25 08:14
2
949 by vmulligan
Mon, 2021-03-29 10:39
Normal topic Calculate TM-score
by nasim.soltani58 » Fri, 2021-03-26 16:50
1
1,269 by rmoretti
Mon, 2021-03-29 06:53
Normal topic How to relax glycans after glycosylating sites on a pose?
by sdtruong » Mon, 2021-03-22 09:44
2
871 by sdtruong
Mon, 2021-03-22 17:05
Normal topic cartesian delta delta G
by patcD » Wed, 2021-02-10 01:46
3
2,077 by j0kaso
Wed, 2021-03-03 17:37
Normal topic Alternatives to DockMCMProtocol
by swirt » Thu, 2021-01-28 17:37
4
1,511 by swirt
Thu, 2021-02-25 21:54
Normal topic Individual Residue Energy
by Peik » Fri, 2021-02-19 10:13
2
1,193 by Peik
Fri, 2021-02-19 10:30
Normal topic Error with importing the pdb file
by nasim.soltani58 » Fri, 2020-12-18 22:46
1
1,010 by matteoferla
Tue, 2021-01-05 04:05
Normal topic How do I insert or delete residues into specific locations?
by Mgerber@mail.yu.edu » Sun, 2020-12-20 15:03
1
912 by matteoferla
Tue, 2021-01-05 03:53
Normal topic Different types of MinMover
by nasim.soltani58 » Sun, 2020-12-20 11:44
2
1,103 by nasim.soltani58
Tue, 2020-12-22 13:37
Normal topic Using pyrosetta to generate quaternary structure of protein
by nasim.soltani58 » Thu, 2020-11-19 17:35
5
2,055 by nasim.soltani58
Tue, 2020-12-08 22:45
Normal topic Assesing the docking
by nasim.soltani58 » Sat, 2020-12-05 21:19
2
1,088 by nasim.soltani58
Tue, 2020-12-08 22:44
Normal topic How do you combine two .pdb protein structure files of the same protein?
by nasim.soltani58 » Sun, 2020-11-22 23:14
4
2,961 by nasim.soltani58
Tue, 2020-12-08 22:44
Normal topic Extending Pyrosetta toturials for docking by adding constraints
by nasim.soltani58 » Thu, 2020-11-26 13:16
1
798 by matteoferla
Wed, 2020-12-02 13:49
Normal topic how do i unding properly?
by patcD » Fri, 2020-11-20 00:38
2
1,344 by matteoferla
Fri, 2020-11-20 07:47
Normal topic Structure not changing after pose.set_phi
by publicclass » Thu, 2020-11-05 09:34
0
599 by publicclass
Thu, 2020-11-05 09:34
Normal topic WindowsError: [Error 32]
by jetu20 » Sun, 2020-10-11 21:02
0
636 by jetu20
Sun, 2020-10-11 21:02
Normal topic Custom Constraints
by jinli711 » Wed, 2020-07-15 15:22
2
1,467 by matteoferla
Fri, 2020-10-09 05:20
Normal topic Gradient Descent
by nasim.soltani58 » Thu, 2020-10-01 16:02
3
1,581 by vmulligan
Tue, 2020-10-06 15:13
Normal topic "Server Could Not Be Reached" although I have an Internet connection
by epi89 » Mon, 2020-09-28 21:32
1
953 by smlewis
Tue, 2020-09-29 12:00
Normal topic trRosetta modelling with a ligand
by ShiranBZ » Tue, 2020-08-25 01:44
0
943 by ShiranBZ
Tue, 2020-08-25 01:44
Normal topic Suggestion: setting Sphinx documentation to not skip __init__
by matteoferla » Mon, 2020-08-24 09:02
0
1,040 by matteoferla
Mon, 2020-08-24 09:02
Normal topic Compile C++ Rosetta to Pyrosetta
by michelleqyh » Fri, 2020-08-21 08:44
0
627 by michelleqyh
Fri, 2020-08-21 08:44
Normal topic Generating Atom Pair Constraints
by Peik » Wed, 2020-08-05 15:39
3
1,611 by Peik
Thu, 2020-08-06 11:50
Normal topic How can I insert my variable length fragmrnts library into pyrosetta?
by michelleqyh » Tue, 2020-08-04 07:26
0
559 by michelleqyh
Tue, 2020-08-04 07:26
Normal topic Best Way to Append/Insert Residue
by jaulicino » Tue, 2020-07-21 10:24
3
2,301 by matteoferla
Sat, 2020-07-25 03:52
Normal topic Segfault when loading scorefxn() and load_from_pdb()
by mm » Wed, 2020-07-22 03:00
0
609 by mm
Wed, 2020-07-22 03:02
Normal topic Adding a residue type to a residue type set
by matteoferla » Wed, 2020-07-08 08:14
2
1,713 by matteoferla
Fri, 2020-07-10 02:20
Normal topic ERROR: unrecognized element Rp when using pose_from_pdb
by johnnytam100 » Thu, 2020-07-09 02:53
3
1,802 by rmoretti
Thu, 2020-07-09 08:35
Normal topic Interface Analyzer with Glycans
by drewaight » Tue, 2020-06-09 20:06
1
993 by matteoferla
Wed, 2020-07-01 05:30
Normal topic Python3.8 release for Mac download is a dead link
by noahC_noahDo » Fri, 2020-06-26 18:20
0
653 by noahC_noahDo
Fri, 2020-06-26 18:20
Normal topic How to fold-and-dock in PyRosetta?
by sarah_b » Thu, 2020-05-14 02:37
0
849 by sarah_b
Thu, 2020-05-14 02:37
Normal topic Affinity optimization with GreedyOptMutationMover
by wentlewi » Thu, 2020-05-07 08:29
0
672 by wentlewi
Thu, 2020-05-07 12:33
Normal topic pose_from_rcsb error
by criss.hartzell » Wed, 2020-04-22 15:12
1
1,313 by matteoferla
Thu, 2020-04-30 12:04
Normal topic Pyrosetta imported after rdkit
by matteoferla » Sun, 2020-03-01 02:38
0
817 by matteoferla
Sun, 2020-03-01 02:38
Normal topic Rosetta get_fa_scorefxn()
by israeldesta » Thu, 2019-10-31 10:18
3
3,202 by jadolfbr
Thu, 2019-11-14 15:33
Normal topic Modeling small molecules
by iGemBoulder » Wed, 2019-09-18 11:53
2
1,626 by rmoretti
Wed, 2019-09-18 14:24
Normal topic Resfile Error
by ac.research » Wed, 2019-07-17 13:25
3
3,188 by vmulligan
Fri, 2019-07-26 15:08
Normal topic Designating Fold Tree Edges as Flexible or Rigid
by nleroy » Tue, 2019-07-23 11:34
3
1,994 by smlewis
Tue, 2019-07-23 13:27
Normal topic PyMOLMover object has no attribute 'link'
by nleroy » Mon, 2019-07-22 07:51
0
822 by nleroy
Mon, 2019-07-22 07:51
Normal topic Classic Relax
by iGemBoulder » Fri, 2019-06-28 09:24
2
1,773 by sheehajh
Wed, 2019-07-17 12:43
Normal topic PyRosetta on a HPC
by ac.research » Thu, 2019-03-14 02:00
1
1,319 by rmoretti
Wed, 2019-07-10 10:17
Normal topic set_torsion_angle error
by yijietseng » Tue, 2019-07-09 12:43
2
1,536 by yijietseng
Wed, 2019-07-10 09:28
Normal topic Score bonus to hbond
by yijietseng » Fri, 2019-07-05 12:28
1
1,145 by rmoretti
Tue, 2019-07-09 09:42
Normal topic Question about the error when using pyrosetta.distributed.io
by cuiyoutian » Sun, 2019-05-19 00:54
1
1,672 by rmoretti
Mon, 2019-06-24 12:54
Normal topic ΔG Calculation with PyRosetta
by Sandra » Tue, 2019-05-21 00:26
1
1,468 by rmoretti
Mon, 2019-06-24 12:47
Normal topic Residue is not compatible with cutpoints
by iGemBoulder » Thu, 2019-06-06 08:57
2
1,844 by iGemBoulder
Tue, 2019-06-11 08:36
Normal topic individual residue score
by yijietseng » Wed, 2019-05-29 09:59
2
1,620 by yijietseng
Fri, 2019-05-31 12:21
Normal topic Relax with constraints
by yijietseng » Tue, 2019-05-07 11:16
2
2,235 by yijietseng
Wed, 2019-05-22 09:54
Normal topic Movers for unspecified DoF
by tfobe » Wed, 2019-04-17 17:30
2
1,652 by tfobe
Mon, 2019-05-20 16:05
Normal topic Error when trying to import 'get_secstruct'
by quantumnumber » Thu, 2019-04-11 03:50
4
3,764 by quantumnumber
Fri, 2019-05-10 02:25
Normal topic Motif Graft Mover error
by ac.research » Tue, 2019-03-26 13:25
1
1,536 by rmoretti
Thu, 2019-05-09 15:56
Normal topic Adding Custom AtomTypes to Pyrosetta
by garrettameek » Wed, 2019-03-13 15:06
1
1,274 by rmoretti
Thu, 2019-05-09 15:06
Normal topic DockingHighResLegacy repacks all sidechains on first apply(), interface sidechains on subsequent apply()
by msellers » Wed, 2012-02-22 22:46
4
4,390 by rmoretti
Thu, 2019-05-09 15:03
Normal topic Need help figuring out the meaning and cause of an error
by AleksanderK » Fri, 2019-05-03 11:02
1
1,333 by rmoretti
Thu, 2019-05-09 14:32
Normal topic Error with etable_atom_pair_energies()
by yijietseng » Mon, 2019-01-28 14:00
2
2,399 by yijietseng
Tue, 2019-05-07 11:02
Normal topic Noob question about optimizing a pose
by AleksanderK » Fri, 2019-04-26 10:49
3
2,182 by AleksanderK
Fri, 2019-05-03 10:57
Normal topic newbie question re pose syntax
by Amy F » Mon, 2019-04-15 12:50
10
6,266 by jadolfbr
Wed, 2019-04-24 10:12
Normal topic Error when using "generate_resfile_from_pose" function
by zhangying1990 » Fri, 2019-01-25 00:45
1
1,692 by zhangying1990
Fri, 2019-02-01 00:44
Normal topic why two packing setting return different energy?
by zhangying1990 » Wed, 2019-01-30 00:18
2
1,825 by zhangying1990
Fri, 2019-02-01 00:30
Normal topic Changing the membrane Thickness (THKN)
by jlapin » Mon, 2018-11-12 06:32
1
1,403 by ralford
Wed, 2018-12-19 03:20
Normal topic Output several poses in a silent file
by SenyorDrew » Tue, 2018-03-20 07:12
1
1,635 by Martin Floor
Tue, 2018-12-11 05:43
Normal topic New Python 3.7
by ac.research » Wed, 2018-08-15 07:00
5
4,111 by MNP1986
Mon, 2018-12-03 04:02
Normal topic Reading poses from silent file that need a params file
by Martin Floor » Mon, 2018-08-13 12:25
2
2,633 by Martin Floor
Mon, 2018-08-27 10:51
Normal topic Alternative to MinMover
by MNP1986 » Tue, 2018-07-31 02:18
2
2,382 by MNP1986
Tue, 2018-07-31 23:50
Normal topic RosettaDesign Result Evaluation
by ac.research » Tue, 2018-06-05 18:45
2
2,207 by ac.research
Wed, 2018-07-18 03:50
Normal topic Folding Video
by ac.research » Sat, 2018-05-12 09:19
1
1,532 by rmoretti
Sat, 2018-06-30 02:38
Normal topic RemodelMover() and the blueprint file
by ac.research » Wed, 2018-06-27 03:55
1
1,647 by rmoretti
Sat, 2018-06-30 02:38
Normal topic GenericMonteCarloMover accept/reject moves
by ac.research » Fri, 2018-06-08 06:04
1
1,622 by rmoretti
Sat, 2018-06-30 02:37
Normal topic Pyrosetta protocol to move protein-peptide docked complex closer to active site.
by eduardoftoliveira » Fri, 2018-06-29 02:50
0
1,623 by eduardoftoliveira
Fri, 2018-06-29 03:46
Normal topic Error while converting mol2 to params using molfile_to_params.py
by ahmadkhalifa » Thu, 2018-06-14 10:30
7
5,478 by rmoretti
Thu, 2018-06-28 12:04
Normal topic PyMOL Update
by ac.research » Tue, 2018-04-10 22:07
6
4,019 by Sergey
Tue, 2018-05-15 11:20
Normal topic Difference between GenericMonteCarloMover() and GenericSimulatedAnnealer()
by ac.research » Fri, 2018-05-11 10:37
4
3,235 by ac.research
Fri, 2018-05-11 15:46

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