You are here
PyRosetta - General
Log in to post new content in the forum.
| Topic / Topic starter | Replies | Views |
Last post |
|
|---|---|---|---|---|
|
Sticky:
FAQ by admin » Mon, 2010-08-30 01:38 |
1 |
18,000 |
by Sergey Fri, 2015-09-04 16:14 |
|
|
New Python 3.7 by ac.research » Wed, 2018-08-15 07:00 |
4 |
176 |
by MNP1986 Thu, 2018-08-30 06:06 |
|
|
Reading poses from silent file that need a params file by Martin Floor » Mon, 2018-08-13 12:25 |
2 |
154 |
by Martin Floor Mon, 2018-08-27 10:51 |
|
|
Alternative to MinMover by MNP1986 » Tue, 2018-07-31 02:18 |
2 |
134 |
by MNP1986 Tue, 2018-07-31 23:50 |
|
|
RosettaDesign Result Evaluation by ac.research » Tue, 2018-06-05 18:45 |
2 |
165 |
by ac.research Wed, 2018-07-18 03:50 |
|
|
Folding Video by ac.research » Sat, 2018-05-12 09:19 |
1 |
173 |
by rmoretti Sat, 2018-06-30 02:38 |
|
|
RemodelMover() and the blueprint file by ac.research » Wed, 2018-06-27 03:55 |
1 |
129 |
by rmoretti Sat, 2018-06-30 02:38 |
|
|
GenericMonteCarloMover accept/reject moves by ac.research » Fri, 2018-06-08 06:04 |
1 |
121 |
by rmoretti Sat, 2018-06-30 02:37 |
|
|
Pyrosetta protocol to move protein-peptide docked complex closer to active site. by eduardoftoliveira » Fri, 2018-06-29 02:50 |
0 |
121 |
by eduardoftoliveira Fri, 2018-06-29 03:46 |
|
|
Error while converting mol2 to params using molfile_to_params.py by ahmadkhalifa » Thu, 2018-06-14 10:30 |
7 |
414 |
by rmoretti Thu, 2018-06-28 12:04 |
|
|
PyMOL Update by ac.research » Tue, 2018-04-10 22:07 |
6 |
362 |
by Sergey Tue, 2018-05-15 11:20 |
|
|
Difference between GenericMonteCarloMover() and GenericSimulatedAnnealer() by ac.research » Fri, 2018-05-11 10:37 |
4 |
232 |
by ac.research Fri, 2018-05-11 15:46 |
|
|
An issue with GenericMonteCarloMover() by ac.research » Wed, 2018-03-07 13:57 |
13 |
739 |
by ac.research Fri, 2018-05-11 10:59 |
|
|
eval_ci_2b() with hydrogen bonds by TensorDuck » Fri, 2018-03-30 14:05 |
2 |
216 |
by TensorDuck Mon, 2018-04-02 13:41 |
|
|
cleanATOM() for non-ideal amino acids by ac.research » Thu, 2018-03-29 07:50 |
0 |
159 |
by ac.research Thu, 2018-03-29 07:50 |
|
|
Output several poses in a silent file by SenyorDrew » Tue, 2018-03-20 07:12 |
0 |
137 |
by SenyorDrew Tue, 2018-03-20 07:12 |
|
|
Fix corrupted Backbone by ac.research » Mon, 2018-03-05 12:48 |
7 |
454 |
by ac.research Tue, 2018-03-13 21:36 |
|
|
ΔΔG Calculation of a Mutation with PyRosetta by akaashvenkat » Fri, 2018-03-09 01:44 |
7 |
941 |
by Sazhnyev Tue, 2018-03-13 15:55 |
|
|
Sample dihedral database by tiagogomes89 » Mon, 2018-03-12 04:28 |
2 |
197 |
by tiagogomes89 Mon, 2018-03-12 10:01 |
|
|
generate_nonstandard_residue_set() takes exactly 2 arguments (1given) by yanghaobjordan » Mon, 2018-01-29 18:59 |
1 |
318 |
by rmoretti Tue, 2018-01-30 06:29 |
|
|
"Server Could Not Be Reached" although I have an Internet connection by aushawxian » Sun, 2018-01-28 20:21 |
1 |
190 |
by walcob Mon, 2018-01-29 11:22 |
|
|
BluePrintBDRMover set_atom_type error by ac.research » Sat, 2017-12-09 02:16 |
3 |
415 |
by rmoretti Sat, 2017-12-16 14:06 |
|
|
Minimization not changing jump edge vector length by bio_james » Tue, 2017-12-12 09:32 |
1 |
207 |
by rmoretti Sat, 2017-12-16 10:47 |
|
|
EnergyMethodCreator error when writing custom energy method by furybubu » Mon, 2017-12-11 15:46 |
2 |
266 |
by furybubu Tue, 2017-12-12 10:04 |
|
|
Score Function with Constraints by ac.research » Fri, 2017-07-28 06:41 |
6 |
1,172 |
by ac.research Sat, 2017-12-09 02:15 |
|
|
Relax with constraints in PyRosetta by ac.research » Tue, 2017-11-21 10:17 |
1 |
441 |
by rmoretti Sat, 2017-12-09 01:50 |
|
|
Docking between peptide and lipid-biayer by sprinkle166 » Thu, 2017-10-26 08:35 |
1 |
248 |
by rmoretti Fri, 2017-12-01 10:34 |
|
|
Determine residues where Backrub Mover is applied by jferrie » Fri, 2017-10-27 08:19 |
1 |
238 |
by rmoretti Fri, 2017-12-01 10:25 |
|
|
Passing a dictionary from pyrosetta to rosetta by SenyorDrew » Mon, 2017-11-13 11:33 |
1 |
237 |
by rmoretti Fri, 2017-12-01 10:10 |
|
|
rosetta.core.pack.pack_rotamers_setup(pose, score_fxn, task_design, rotsets) not working by tschiex » Sun, 2017-11-05 08:29 |
0 |
233 |
by tschiex Sun, 2017-11-05 08:29 |
|
|
Using ref2015 and talaris2014 in the same script by SenyorDrew » Wed, 2017-11-01 10:24 |
2 |
582 |
by SenyorDrew Wed, 2017-11-01 10:39 |
|
|
Using InterfaceSasaFilter by SenyorDrew » Thu, 2017-10-26 07:53 |
2 |
449 |
by SenyorDrew Thu, 2017-10-26 13:30 |
|
|
Which function can be use for mutation? by sprinkle166 » Wed, 2017-10-18 09:10 |
2 |
367 |
by sprinkle166 Thu, 2017-10-19 12:57 |
|
|
Where can I found the dictory of all function of Pyrosetta？ by sprinkle166 » Mon, 2017-10-16 13:58 |
2 |
375 |
by sprinkle166 Wed, 2017-10-18 09:06 |
|
|
Fragment Picking in PyRosetta by ac.research » Thu, 2017-08-31 04:48 |
9 |
1,452 |
by rmoretti Tue, 2017-10-10 09:16 |
|
|
Mistake about rosetta.init() by sprinkle166 » Tue, 2017-09-26 09:46 |
3 |
514 |
by sprinkle166 Wed, 2017-09-27 09:17 |
|
|
Problem about Pyrosetta installation win7 by sprinkle166 » Mon, 2017-09-04 20:15 |
5 |
766 |
by sprinkle166 Fri, 2017-09-08 12:57 |
|
|
Question about gradient of energy function by kyler » Tue, 2017-08-22 14:09 |
7 |
1,111 |
by rmoretti Tue, 2017-09-05 10:05 |
|
|
PSIPRED secondary structure prediction in PyRosetta by ac.research » Fri, 2017-09-01 22:56 |
1 |
491 |
by rmoretti Mon, 2017-09-04 09:52 |
|
|
PyRosetta Global Docking by ac.research » Sat, 2017-08-26 03:31 |
2 |
499 |
by Sergey Thu, 2017-08-31 04:39 |
|
|
Muting output in pyrosetta by SenyorDrew » Mon, 2017-08-14 08:13 |
6 |
977 |
by SenyorDrew Tue, 2017-08-15 07:41 |
|
|
Fragment Quality by ac.research » Mon, 2017-07-10 10:23 |
9 |
1,387 |
by ac.research Fri, 2017-07-14 12:55 |
|
|
RosettaHoles for PyRosetta - Void Detection/Scoring by ac.research » Sat, 2017-07-01 11:28 |
5 |
832 |
by rmoretti Thu, 2017-07-06 12:49 |
|
|
How To Read PyRosetta Documentation - GenericMonteCarloMover as example by ac.research » Wed, 2017-07-05 09:08 |
2 |
543 |
by ac.research Thu, 2017-07-06 11:09 |
|
|
PyRosetta FastDesign by ac.research » Tue, 2017-07-04 10:23 |
9 |
1,618 |
by ac.research Wed, 2017-07-05 16:59 |
|
|
SASA of pose by ac.research » Mon, 2017-06-26 03:55 |
2 |
562 |
by ac.research Fri, 2017-06-30 05:44 |
|
|
Repeat study by thomashrabe » Tue, 2017-06-20 11:21 |
2 |
465 |
by parmef Sat, 2017-06-24 03:18 |
|
|
generate_nonstandard_residue_set Exception by lah435 » Tue, 2017-06-13 18:28 |
3 |
734 |
by lah435 Fri, 2017-06-16 12:24 |
|
|
Reading constraints from a file by lah435 » Wed, 2017-06-14 18:56 |
2 |
572 |
by rmoretti Fri, 2017-06-16 07:22 |
|
|
Fold Tutorial by ac.research » Sat, 2017-06-03 19:39 |
7 |
1,419 |
by smlewis Sat, 2017-06-10 15:15 |
|
|
Cutout part of a protein by ac.research » Wed, 2017-05-31 11:55 |
2 |
481 |
by jadolfbr Sat, 2017-06-03 19:20 |
|
|
Energy scores of D-amino acids by jshen2 » Mon, 2017-05-08 10:15 |
7 |
1,132 |
by jshen2 Sat, 2017-05-13 08:14 |
|
|
hbond_sr_bb, hbond_lr_bb, fa_intra_rep energies from ScoreFunction() by gerdos » Tue, 2017-04-18 04:46 |
4 |
885 |
by gerdos Fri, 2017-04-21 01:53 |
|
|
Creating rotamers, computing pairwise and total energies by gerdos » Wed, 2017-04-12 02:57 |
6 |
1,180 |
by gerdos Tue, 2017-04-18 10:15 |
|
|
Libmini crashes after protocol run by whooper » Tue, 2017-01-31 09:48 |
1 |
589 |
by Sergey Tue, 2017-01-31 13:42 |
|
|
Writing out individual residues to a pdbfile by SenyorDrew » Thu, 2016-12-08 07:33 |
3 |
1,067 |
by SenyorDrew Thu, 2016-12-08 13:10 |
|
|
Symmetric design with PyRosetta by dsim » Thu, 2016-11-17 07:50 |
9 |
2,184 |
by dsim Tue, 2016-11-22 08:11 |
|
|
How to use SAXS energy score in PyRosetta by Jie Hou » Mon, 2016-09-05 08:31 |
5 |
1,918 |
by rmoretti Mon, 2016-11-14 13:21 |
|
|
Glycan minimization by seanle24245 » Thu, 2016-10-06 13:51 |
1 |
562 |
by Labonte Thu, 2016-10-06 14:05 |
|
|
Relaxing experimental structure by aloctavodia » Thu, 2016-09-29 03:46 |
8 |
2,501 |
by aloctavodia Thu, 2016-10-06 03:29 |
|
|
Convert Rotamer Vector to Chi Angles by L-Allanine » Sat, 2016-07-30 09:16 |
1 |
594 |
by rmoretti Mon, 2016-09-05 10:35 |
|
|
Creating FeatureReporters in PyRosetta by LiorZ » Tue, 2016-08-23 23:50 |
7 |
1,966 |
by smlewis Wed, 2016-08-24 14:23 |
|
|
Glycan in IgG1 Fc by seanle24245 » Fri, 2016-07-22 07:50 |
2 |
907 |
by jadolfbr Fri, 2016-07-22 10:29 |
|
|
How to combine two chains by seanle24245 » Tue, 2016-07-19 07:54 |
5 |
2,130 |
by seanle24245 Fri, 2016-07-22 06:53 |
|
|
How to call SnugDock from PyRosetta by SenyorDrew » Tue, 2016-06-21 07:28 |
1 |
632 |
by jeliazkov Fri, 2016-07-01 08:42 |
|
|
How to set up external C++ folding server by seanle24245 » Sat, 2016-06-11 10:54 |
8 |
2,647 |
by seanle24245 Sun, 2016-06-19 18:30 |
|
|
How to determine interface residues by rbehan » Wed, 2015-10-14 11:25 |
2 |
1,712 |
by rmoretti Fri, 2016-06-17 09:25 |
|
|
PyRosetta memory footprint by LiorZ » Thu, 2016-06-16 04:36 |
3 |
1,169 |
by LiorZ Fri, 2016-06-17 08:20 |
|
|
mutate_residue doesn't mutate by dsim » Wed, 2015-03-18 02:32 |
6 |
2,894 |
by rmoretti Fri, 2016-04-29 09:48 |
|
|
cartesian space minimization by bystrc » Fri, 2014-03-28 14:17 |
10 |
6,827 |
by rmoretti Thu, 2016-02-18 14:22 |
|
|
Rigid body perturbation while docking by wajidarshad » Fri, 2015-12-11 02:14 |
1 |
927 |
by rmoretti Wed, 2015-12-16 11:25 |
|
|
ClassicRelax: how to block the backbone by oppopomoz » Fri, 2015-11-27 08:17 |
3 |
1,652 |
by rmoretti Tue, 2015-12-01 15:18 |
|
|
How does Rosetta select atom pairs for Lennard Jones Potential calculations? by bowang2013 » Thu, 2015-10-29 08:04 |
4 |
2,176 |
by smlewis Tue, 2015-11-03 09:17 |
|
|
RuntimeError: unidentifiable C++ exception in both linux and window. by wajidarshad » Tue, 2015-10-27 08:16 |
1 |
1,082 |
by rmoretti Tue, 2015-10-27 08:46 |
|
|
Using a custom scoring method in a high resolution refinement by kalabharath » Sun, 2015-10-25 22:28 |
1 |
925 |
by rmoretti Mon, 2015-10-26 13:57 |
|
|
Parsing XML tags using pyrosetta by rbehan » Mon, 2015-10-19 06:37 |
1 |
870 |
by rmoretti Mon, 2015-10-19 08:25 |
|
|
pose.replace_residue() & incorrect scoring by msun » Tue, 2015-10-06 10:51 |
3 |
1,557 |
by rmoretti Wed, 2015-10-07 16:35 |
|
|
add missing residues into rna by galvaner » Tue, 2015-09-15 16:41 |
3 |
1,586 |
by galvaner Mon, 2015-09-21 13:37 |
|
|
Pypy not working, python works... by MarkW » Thu, 2015-03-05 05:15 |
4 |
3,091 |
by MarkW Mon, 2015-08-24 04:43 |
|
|
Namespace PyRosetta Build for Windows? by protos_heis » Sat, 2015-08-15 10:49 |
3 |
1,744 |
by Sergey Wed, 2015-08-19 15:47 |
|
|
backrub mover by sunlufinal » Sat, 2012-11-24 04:46 |
8 |
5,762 |
by jadolfbr Tue, 2015-08-18 00:53 |
|
|
PyMOL did not work from a remote machine with PyRosetta by Jeremy1990 » Sat, 2015-08-08 21:25 |
1 |
1,006 |
by rmoretti Wed, 2015-08-12 10:29 |
|
|
fragment building by StevPChem » Tue, 2015-08-04 09:01 |
3 |
1,590 |
by StevPChem Thu, 2015-08-06 11:07 |
|
|
Complex DNA Protein docking by kim-nguyen » Wed, 2015-07-22 13:49 |
2 |
1,724 |
by kim-nguyen Fri, 2015-07-24 23:04 |
|
|
Score Function weights by thorx020 » Sun, 2012-08-12 13:59 |
24 |
19,675 |
by msun Fri, 2015-07-10 11:03 |
|
|
Ligand dihedral moves by lah435 » Tue, 2015-03-03 11:56 |
1 |
973 |
by rmoretti Fri, 2015-04-24 13:17 |
|
|
pymover = PyMOL_Mover() hangs IPython? by cossio » Fri, 2015-04-10 07:38 |
4 |
2,001 |
by cossio Wed, 2015-04-15 12:31 |
|
|
Reducing PyRosetta memory usage by ajasja » Fri, 2014-10-03 01:51 |
4 |
2,678 |
by Sergey Fri, 2015-04-10 11:25 |
|
|
"No Python class registered..." when trying to access SymDofs by pitmand » Tue, 2015-03-17 14:29 |
3 |
2,194 |
by Sergey Fri, 2015-03-27 14:34 |
|
|
PyRosetta surface docking not working by cgautier » Mon, 2015-03-16 05:45 |
6 |
3,300 |
by Sergey Wed, 2015-03-18 11:22 |
|
|
number of residues in a specific chain by felipet » Mon, 2015-03-09 09:30 |
1 |
1,054 |
by jadolfbr Mon, 2015-03-09 12:54 |
|
|
RosettaModel blueprint for PyRosetta by bbrown11 » Tue, 2015-03-03 13:53 |
2 |
1,373 |
by bbrown11 Wed, 2015-03-04 18:49 |
|
|
Windows Dunbrack10.lib.bin "out dated" by protos_heis » Thu, 2015-02-26 13:35 |
2 |
1,422 |
by protos_heis Fri, 2015-02-27 13:38 |
|
|
London by MarkW » Sun, 2015-02-08 14:14 |
0 |
1,077 |
by MarkW Sun, 2015-02-08 14:14 |
|
|
PyRosetta AbInitio Folding protocol by batch2k » Tue, 2009-12-15 11:09 |
7 |
6,199 |
by jadolfbr Thu, 2015-02-05 10:32 |
|
|
About missing disulfide partners for residue... by Mon » Wed, 2014-12-17 05:37 |
3 |
2,510 |
by jadolfbr Thu, 2014-12-18 09:37 |
|
|
pose_from_pdb gives RuntimeError: unidentifiable C++ exception? by cossio » Thu, 2014-11-27 14:43 |
1 |
1,439 |
by cossio Fri, 2014-11-28 05:05 |
|
|
Coordinates in pose do not match those in PDB by ajasja » Tue, 2014-10-28 12:29 |
2 |
1,436 |
by ajasja Thu, 2014-10-30 08:32 |
|
|
Generating random number using numeric.random by resiros » Thu, 2014-10-23 09:25 |
3 |
1,754 |
by rmoretti Wed, 2014-10-29 10:00 |
|
|
Enumerating torsion (dihedral) angles by ajasja » Wed, 2014-10-01 09:10 |
2 |
1,857 |
by rmoretti Mon, 2014-10-06 15:10 |
Log in to post new content in the forum.
