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PyRosetta - General
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FAQ by admin » Mon, 2010-08-30 01:38 |
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by Sergey Fri, 2015-09-04 16:14 |
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Fragment Quality by ac.research » Mon, 2017-07-10 10:23 |
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107 |
by ac.research Fri, 2017-07-14 12:55 |
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RosettaHoles for PyRosetta - Void Detection/Scoring by ac.research » Sat, 2017-07-01 11:28 |
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116 |
by rmoretti Thu, 2017-07-06 12:49 |
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How To Read PyRosetta Documentation - GenericMonteCarloMover as example by ac.research » Wed, 2017-07-05 09:08 |
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52 |
by ac.research Thu, 2017-07-06 11:09 |
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PyRosetta FastDesign by ac.research » Tue, 2017-07-04 10:23 |
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141 |
by ac.research Wed, 2017-07-05 16:59 |
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SASA of pose by ac.research » Mon, 2017-06-26 03:55 |
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66 |
by ac.research Fri, 2017-06-30 05:44 |
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Repeat study by thomashrabe » Tue, 2017-06-20 11:21 |
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75 |
by parmef Sat, 2017-06-24 03:18 |
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generate_nonstandard_residue_set Exception by lah435 » Tue, 2017-06-13 18:28 |
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90 |
by lah435 Fri, 2017-06-16 12:24 |
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Reading constraints from a file by lah435 » Wed, 2017-06-14 18:56 |
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118 |
by rmoretti Fri, 2017-06-16 07:22 |
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Fold Tutorial by ac.research » Sat, 2017-06-03 19:39 |
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180 |
by smlewis Sat, 2017-06-10 15:15 |
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Cutout part of a protein by ac.research » Wed, 2017-05-31 11:55 |
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91 |
by jadolfbr Sat, 2017-06-03 19:20 |
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Energy scores of D-amino acids by jshen2 » Mon, 2017-05-08 10:15 |
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242 |
by jshen2 Sat, 2017-05-13 08:14 |
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hbond_sr_bb, hbond_lr_bb, fa_intra_rep energies from ScoreFunction() by gerdos » Tue, 2017-04-18 04:46 |
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195 |
by gerdos Fri, 2017-04-21 01:53 |
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Creating rotamers, computing pairwise and total energies by gerdos » Wed, 2017-04-12 02:57 |
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241 |
by gerdos Tue, 2017-04-18 10:15 |
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Libmini crashes after protocol run by whooper » Tue, 2017-01-31 09:48 |
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230 |
by Sergey Tue, 2017-01-31 13:42 |
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Writing out individual residues to a pdbfile by SenyorDrew » Thu, 2016-12-08 07:33 |
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422 |
by SenyorDrew Thu, 2016-12-08 13:10 |
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Symmetric design with PyRosetta by dsim » Thu, 2016-11-17 07:50 |
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938 |
by dsim Tue, 2016-11-22 08:11 |
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How to use SAXS energy score in PyRosetta by Jie Hou » Mon, 2016-09-05 08:31 |
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832 |
by rmoretti Mon, 2016-11-14 13:21 |
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Glycan minimization by seanle24245 » Thu, 2016-10-06 13:51 |
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244 |
by Labonte Thu, 2016-10-06 14:05 |
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Relaxing experimental structure by aloctavodia » Thu, 2016-09-29 03:46 |
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1,083 |
by aloctavodia Thu, 2016-10-06 03:29 |
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Convert Rotamer Vector to Chi Angles by L-Allanine » Sat, 2016-07-30 09:16 |
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300 |
by rmoretti Mon, 2016-09-05 10:35 |
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Creating FeatureReporters in PyRosetta by LiorZ » Tue, 2016-08-23 23:50 |
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888 |
by smlewis Wed, 2016-08-24 14:23 |
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Glycan in IgG1 Fc by seanle24245 » Fri, 2016-07-22 07:50 |
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426 |
by jadolfbr Fri, 2016-07-22 10:29 |
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How to combine two chains by seanle24245 » Tue, 2016-07-19 07:54 |
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978 |
by seanle24245 Fri, 2016-07-22 06:53 |
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How to call SnugDock from PyRosetta by SenyorDrew » Tue, 2016-06-21 07:28 |
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348 |
by jeliazkov Fri, 2016-07-01 08:42 |
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How to set up external C++ folding server by seanle24245 » Sat, 2016-06-11 10:54 |
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1,380 |
by seanle24245 Sun, 2016-06-19 18:30 |
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How to determine interface residues by rbehan » Wed, 2015-10-14 11:25 |
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1,008 |
by rmoretti Fri, 2016-06-17 09:25 |
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PyRosetta memory footprint by LiorZ » Thu, 2016-06-16 04:36 |
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575 |
by LiorZ Fri, 2016-06-17 08:20 |
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mutate_residue doesn't mutate by dsim » Wed, 2015-03-18 02:32 |
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1,884 |
by rmoretti Fri, 2016-04-29 09:48 |
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cartesian space minimization by bystrc » Fri, 2014-03-28 14:17 |
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4,912 |
by rmoretti Thu, 2016-02-18 14:22 |
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Rigid body perturbation while docking by wajidarshad » Fri, 2015-12-11 02:14 |
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558 |
by rmoretti Wed, 2015-12-16 11:25 |
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ClassicRelax: how to block the backbone by oppopomoz » Fri, 2015-11-27 08:17 |
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1,049 |
by rmoretti Tue, 2015-12-01 15:18 |
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How does Rosetta select atom pairs for Lennard Jones Potential calculations? by bowang2013 » Thu, 2015-10-29 08:04 |
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1,394 |
by smlewis Tue, 2015-11-03 09:17 |
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RuntimeError: unidentifiable C++ exception in both linux and window. by wajidarshad » Tue, 2015-10-27 08:16 |
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578 |
by rmoretti Tue, 2015-10-27 08:46 |
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Using a custom scoring method in a high resolution refinement by kalabharath » Sun, 2015-10-25 22:28 |
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558 |
by rmoretti Mon, 2015-10-26 13:57 |
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Parsing XML tags using pyrosetta by rbehan » Mon, 2015-10-19 06:37 |
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502 |
by rmoretti Mon, 2015-10-19 08:25 |
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pose.replace_residue() & incorrect scoring by msun » Tue, 2015-10-06 10:51 |
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904 |
by rmoretti Wed, 2015-10-07 16:35 |
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add missing residues into rna by galvaner » Tue, 2015-09-15 16:41 |
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1,020 |
by galvaner Mon, 2015-09-21 13:37 |
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Pypy not working, python works... by MarkW » Thu, 2015-03-05 05:15 |
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2,080 |
by MarkW Mon, 2015-08-24 04:43 |
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Namespace PyRosetta Build for Windows? by protos_heis » Sat, 2015-08-15 10:49 |
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1,145 |
by Sergey Wed, 2015-08-19 15:47 |
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backrub mover by sunlufinal » Sat, 2012-11-24 04:46 |
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4,275 |
by jadolfbr Tue, 2015-08-18 00:53 |
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PyMOL did not work from a remote machine with PyRosetta by Jeremy1990 » Sat, 2015-08-08 21:25 |
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713 |
by rmoretti Wed, 2015-08-12 10:29 |
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fragment building by StevPChem » Tue, 2015-08-04 09:01 |
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981 |
by StevPChem Thu, 2015-08-06 11:07 |
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Complex DNA Protein docking by kim-nguyen » Wed, 2015-07-22 13:49 |
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1,231 |
by kim-nguyen Fri, 2015-07-24 23:04 |
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Score Function weights by thorx020 » Sun, 2012-08-12 13:59 |
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15,033 |
by msun Fri, 2015-07-10 11:03 |
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Ligand dihedral moves by lah435 » Tue, 2015-03-03 11:56 |
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682 |
by rmoretti Fri, 2015-04-24 13:17 |
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pymover = PyMOL_Mover() hangs IPython? by cossio » Fri, 2015-04-10 07:38 |
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1,410 |
by cossio Wed, 2015-04-15 12:31 |
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Reducing PyRosetta memory usage by ajasja » Fri, 2014-10-03 01:51 |
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2,010 |
by Sergey Fri, 2015-04-10 11:25 |
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"No Python class registered..." when trying to access SymDofs by pitmand » Tue, 2015-03-17 14:29 |
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1,544 |
by Sergey Fri, 2015-03-27 14:34 |
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PyRosetta surface docking not working by cgautier » Mon, 2015-03-16 05:45 |
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2,296 |
by Sergey Wed, 2015-03-18 11:22 |
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number of residues in a specific chain by felipet » Mon, 2015-03-09 09:30 |
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746 |
by jadolfbr Mon, 2015-03-09 12:54 |
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RosettaModel blueprint for PyRosetta by bbrown11 » Tue, 2015-03-03 13:53 |
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912 |
by bbrown11 Wed, 2015-03-04 18:49 |
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Windows Dunbrack10.lib.bin "out dated" by protos_heis » Thu, 2015-02-26 13:35 |
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973 |
by protos_heis Fri, 2015-02-27 13:38 |
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London by MarkW » Sun, 2015-02-08 14:14 |
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859 |
by MarkW Sun, 2015-02-08 14:14 |
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PyRosetta AbInitio Folding protocol by batch2k » Tue, 2009-12-15 11:09 |
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4,794 |
by jadolfbr Thu, 2015-02-05 10:32 |
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About missing disulfide partners for residue... by Mon » Wed, 2014-12-17 05:37 |
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1,678 |
by jadolfbr Thu, 2014-12-18 09:37 |
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pose_from_pdb gives RuntimeError: unidentifiable C++ exception? by cossio » Thu, 2014-11-27 14:43 |
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1,064 |
by cossio Fri, 2014-11-28 05:05 |
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Coordinates in pose do not match those in PDB by ajasja » Tue, 2014-10-28 12:29 |
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1,063 |
by ajasja Thu, 2014-10-30 08:32 |
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Generating random number using numeric.random by resiros » Thu, 2014-10-23 09:25 |
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1,158 |
by rmoretti Wed, 2014-10-29 10:00 |
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Enumerating torsion (dihedral) angles by ajasja » Wed, 2014-10-01 09:10 |
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1,286 |
by rmoretti Mon, 2014-10-06 15:10 |
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Residue.set_chi() does not update internal state? by ajasja » Wed, 2014-09-24 09:19 |
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2,954 |
by rmoretti Mon, 2014-10-06 14:37 |
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I don't know what's the problem when load the fragment file by john8611 » Mon, 2014-09-29 03:45 |
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2,126 |
by rmoretti Tue, 2014-09-30 13:16 |
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Iterating over graph edges in PyRosetta. by ajasja » Mon, 2014-09-22 07:21 |
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1,348 |
by rmoretti Mon, 2014-09-29 00:06 |
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Displaying side-chain rotamers in PyMol by ajasja » Wed, 2014-09-24 08:57 |
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867 |
by ajasja Wed, 2014-09-24 08:57 |
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Getting chi rotamers by ajasja » Tue, 2014-08-26 12:11 |
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1,380 |
by rmoretti Tue, 2014-09-23 08:36 |
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Making mutations in PyRosetta? by thorx020 » Thu, 2012-08-09 09:24 |
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7,312 |
by ajasja Mon, 2014-09-22 10:17 |
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Forum webpage not working by ajasja » Mon, 2014-09-22 06:14 |
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814 |
by ajasja Mon, 2014-09-22 09:53 |
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Large Memory usage in Windows r10 Build by ajasja » Fri, 2014-08-22 09:09 |
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2,799 |
by ajasja Mon, 2014-09-22 09:51 |
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Viewing and modifying hydrogen bond detection criteria by promero » Tue, 2014-09-16 15:26 |
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923 |
by rmoretti Wed, 2014-09-17 07:29 |
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Inconsistencies in full atom energy calculations by dsim » Tue, 2014-07-29 06:02 |
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1,399 |
by dsim Mon, 2014-09-15 07:47 |
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Error in loop modeling protocol its showing error "NameError: name 'ccd_closure' is not defined" by jai_INMAS » Sun, 2013-10-20 05:22 |
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910 |
by Labonte Mon, 2014-09-08 09:13 |
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Missing residue coordinates in PDB files by lanselibai » Thu, 2014-09-04 07:34 |
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2,025 |
by rmoretti Thu, 2014-09-04 11:36 |
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Can I export command line & result from iPython PyRosetta shell to a text file? by lanselibai » Mon, 2014-08-25 04:05 |
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1,231 |
by lanselibai Tue, 2014-08-26 01:49 |
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New Windows build is available for download by Sergey » Fri, 2014-07-18 13:50 |
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1,054 |
by ajasja Fri, 2014-08-22 08:32 |
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Nonstandard residue parameters fail by lah435 » Wed, 2014-08-06 17:53 |
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1,758 |
by lah435 Mon, 2014-08-18 17:23 |
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mutate_residue not working by lanselibai » Mon, 2014-08-11 03:55 |
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2,694 |
by lanselibai Sun, 2014-08-17 07:30 |
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Calculating sasa per atom and atomid_map by ioannis.f » Wed, 2014-08-13 05:26 |
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841 |
by Sergey Thu, 2014-08-14 11:54 |
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Can we have email alert for the reply? by lanselibai » Wed, 2014-08-13 13:24 |
0 |
745 |
by lanselibai Wed, 2014-08-13 13:24 |
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task_pack.restrict_to_repacking() not working by lanselibai » Mon, 2014-08-11 08:06 |
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704 |
by rmoretti Tue, 2014-08-12 08:35 |
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Argument error when running D120_Ligand_interface.py by piladam » Wed, 2014-07-09 10:43 |
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2,494 |
by rmoretti Mon, 2014-07-21 11:15 |
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pose_from_sequence with modified residue by nawsad » Wed, 2014-06-25 02:59 |
4 |
1,655 |
by nawsad Sun, 2014-07-13 00:49 |
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Approximating CHARMM energy by the rosetta scoring function by ajasja » Fri, 2014-06-20 02:16 |
4 |
2,086 |
by ajasja Thu, 2014-07-03 05:53 |
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Problems when inserting spin-label R1A by ajasja » Fri, 2014-06-27 04:14 |
2 |
1,107 |
by ajasja Thu, 2014-07-03 05:36 |
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Capturing the output of scorefxn.show(pose) by ajasja » Fri, 2014-06-20 05:30 |
2 |
1,390 |
by ajasja Sat, 2014-06-21 11:57 |
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Getting which rigid body a residue belongs to? by JuliusSu » Thu, 2014-04-17 21:12 |
3 |
1,483 |
by jadolfbr Mon, 2014-04-21 17:28 |
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Quadratic Function for Distance Constraints? by protos_heis » Mon, 2014-01-27 06:21 |
4 |
1,445 |
by protos_heis Mon, 2014-04-21 06:48 |
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How to calculate the pairwise rotamer-to-rotamer energy table between mutable residues allowed to change to all amino acid types by AyushGoyal » Wed, 2014-01-22 16:24 |
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3,204 |
by rmoretti Mon, 2014-04-21 06:48 |
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Amino acid modifications: retinal linked to lysine by tsikosek » Tue, 2014-01-21 12:52 |
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1,371 |
by rmoretti Mon, 2014-04-21 06:48 |
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is_aromatic function by jadolfbr » Mon, 2013-12-02 19:31 |
2 |
1,011 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Alignment and RMSD by ñ » Wed, 2013-11-27 12:43 |
5 |
3,500 |
by rmoretti Mon, 2014-04-21 06:48 |
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Rotamer information from pose by AyushGoyal » Wed, 2014-01-15 14:37 |
7 |
3,150 |
by rmoretti Mon, 2014-04-21 06:48 |
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Symmetric pose initialization fails by gudmal » Tue, 2013-11-26 06:42 |
3 |
1,395 |
by Sergey Mon, 2014-04-21 06:48 |
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Protein docking with PyRosetta Error! by Apiwat » Sat, 2014-01-11 23:32 |
3 |
1,969 |
by Apiwat Mon, 2014-04-21 06:48 |
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Fragments file by Run » Tue, 2013-11-26 02:40 |
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1,773 |
by rmoretti Mon, 2014-04-21 06:48 |
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GDT_TS how can I get it with pyrosetta? by oppopomoz » Thu, 2014-01-09 02:51 |
1 |
1,083 |
by rmoretti Mon, 2014-04-21 06:48 |
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loop modeling error 'CcdLoopClosureMover' object is not callable by jai_INMAS » Tue, 2013-10-22 01:49 |
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1,312 |
by jai_INMAS Mon, 2014-04-21 06:48 |
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change dihedral angles of any residue by bharat_46010 » Fri, 2013-11-15 00:30 |
3 |
1,738 |
by bharat_46010 Mon, 2014-04-21 06:48 |
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Documentation of ``mysterious'' protocols by ñ » Wed, 2013-10-30 08:19 |
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1,634 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Error in loop modeling protocol by jai_INMAS » Fri, 2013-10-18 07:08 |
5 |
2,159 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Regarding the Documentation of Rosetta and PyRosetta by jai_INMAS » Tue, 2013-10-22 23:41 |
3 |
1,544 |
by jai_INMAS Mon, 2014-04-21 06:48 |
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