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PyRosetta - General

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 01:38
1
17,642 by Sergey
Fri, 2015-09-04 16:14
Normal topic Fragment Quality
by ac.research » Mon, 2017-07-10 10:23
9
107 by ac.research
Fri, 2017-07-14 12:55
Normal topic RosettaHoles for PyRosetta - Void Detection/Scoring
by ac.research » Sat, 2017-07-01 11:28
5
116 by rmoretti
Thu, 2017-07-06 12:49
Normal topic How To Read PyRosetta Documentation - GenericMonteCarloMover as example
by ac.research » Wed, 2017-07-05 09:08
2
52 by ac.research
Thu, 2017-07-06 11:09
Normal topic PyRosetta FastDesign
by ac.research » Tue, 2017-07-04 10:23
9
141 by ac.research
Wed, 2017-07-05 16:59
Normal topic SASA of pose
by ac.research » Mon, 2017-06-26 03:55
2
66 by ac.research
Fri, 2017-06-30 05:44
Normal topic Repeat study
by thomashrabe » Tue, 2017-06-20 11:21
2
75 by parmef
Sat, 2017-06-24 03:18
Normal topic generate_nonstandard_residue_set Exception
by lah435 » Tue, 2017-06-13 18:28
3
90 by lah435
Fri, 2017-06-16 12:24
Normal topic Reading constraints from a file
by lah435 » Wed, 2017-06-14 18:56
2
118 by rmoretti
Fri, 2017-06-16 07:22
Normal topic Fold Tutorial
by ac.research » Sat, 2017-06-03 19:39
7
180 by smlewis
Sat, 2017-06-10 15:15
Normal topic Cutout part of a protein
by ac.research » Wed, 2017-05-31 11:55
2
91 by jadolfbr
Sat, 2017-06-03 19:20
Normal topic Energy scores of D-amino acids
by jshen2 » Mon, 2017-05-08 10:15
7
242 by jshen2
Sat, 2017-05-13 08:14
Normal topic hbond_sr_bb, hbond_lr_bb, fa_intra_rep energies from ScoreFunction()
by gerdos » Tue, 2017-04-18 04:46
4
195 by gerdos
Fri, 2017-04-21 01:53
Normal topic Creating rotamers, computing pairwise and total energies
by gerdos » Wed, 2017-04-12 02:57
6
241 by gerdos
Tue, 2017-04-18 10:15
Normal topic Libmini crashes after protocol run
by whooper » Tue, 2017-01-31 09:48
1
230 by Sergey
Tue, 2017-01-31 13:42
Normal topic Writing out individual residues to a pdbfile
by SenyorDrew » Thu, 2016-12-08 07:33
3
422 by SenyorDrew
Thu, 2016-12-08 13:10
Normal topic Symmetric design with PyRosetta
by dsim » Thu, 2016-11-17 07:50
9
938 by dsim
Tue, 2016-11-22 08:11
Normal topic How to use SAXS energy score in PyRosetta
by Jie Hou » Mon, 2016-09-05 08:31
5
832 by rmoretti
Mon, 2016-11-14 13:21
Normal topic Glycan minimization
by seanle24245 » Thu, 2016-10-06 13:51
1
244 by Labonte
Thu, 2016-10-06 14:05
Normal topic Relaxing experimental structure
by aloctavodia » Thu, 2016-09-29 03:46
8
1,083 by aloctavodia
Thu, 2016-10-06 03:29
Normal topic Convert Rotamer Vector to Chi Angles
by L-Allanine » Sat, 2016-07-30 09:16
1
300 by rmoretti
Mon, 2016-09-05 10:35
Normal topic Creating FeatureReporters in PyRosetta
by LiorZ » Tue, 2016-08-23 23:50
7
888 by smlewis
Wed, 2016-08-24 14:23
Normal topic Glycan in IgG1 Fc
by seanle24245 » Fri, 2016-07-22 07:50
2
426 by jadolfbr
Fri, 2016-07-22 10:29
Normal topic How to combine two chains
by seanle24245 » Tue, 2016-07-19 07:54
5
978 by seanle24245
Fri, 2016-07-22 06:53
Normal topic How to call SnugDock from PyRosetta
by SenyorDrew » Tue, 2016-06-21 07:28
1
348 by jeliazkov
Fri, 2016-07-01 08:42
Normal topic How to set up external C++ folding server
by seanle24245 » Sat, 2016-06-11 10:54
8
1,380 by seanle24245
Sun, 2016-06-19 18:30
Normal topic How to determine interface residues
by rbehan » Wed, 2015-10-14 11:25
2
1,008 by rmoretti
Fri, 2016-06-17 09:25
Normal topic PyRosetta memory footprint
by LiorZ » Thu, 2016-06-16 04:36
3
575 by LiorZ
Fri, 2016-06-17 08:20
Normal topic mutate_residue doesn't mutate
by dsim » Wed, 2015-03-18 02:32
6
1,884 by rmoretti
Fri, 2016-04-29 09:48
Normal topic cartesian space minimization
by bystrc » Fri, 2014-03-28 14:17
10
4,912 by rmoretti
Thu, 2016-02-18 14:22
Normal topic Rigid body perturbation while docking
by wajidarshad » Fri, 2015-12-11 02:14
1
558 by rmoretti
Wed, 2015-12-16 11:25
Normal topic ClassicRelax: how to block the backbone
by oppopomoz » Fri, 2015-11-27 08:17
3
1,049 by rmoretti
Tue, 2015-12-01 15:18
Normal topic How does Rosetta select atom pairs for Lennard Jones Potential calculations?
by bowang2013 » Thu, 2015-10-29 08:04
4
1,394 by smlewis
Tue, 2015-11-03 09:17
Normal topic RuntimeError: unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:16
1
578 by rmoretti
Tue, 2015-10-27 08:46
Normal topic Using a custom scoring method in a high resolution refinement
by kalabharath » Sun, 2015-10-25 22:28
1
558 by rmoretti
Mon, 2015-10-26 13:57
Normal topic Parsing XML tags using pyrosetta
by rbehan » Mon, 2015-10-19 06:37
1
502 by rmoretti
Mon, 2015-10-19 08:25
Normal topic pose.replace_residue() & incorrect scoring
by msun » Tue, 2015-10-06 10:51
3
904 by rmoretti
Wed, 2015-10-07 16:35
Normal topic add missing residues into rna
by galvaner » Tue, 2015-09-15 16:41
3
1,020 by galvaner
Mon, 2015-09-21 13:37
Normal topic Pypy not working, python works...
by MarkW » Thu, 2015-03-05 05:15
4
2,080 by MarkW
Mon, 2015-08-24 04:43
Normal topic Namespace PyRosetta Build for Windows?
by protos_heis » Sat, 2015-08-15 10:49
3
1,145 by Sergey
Wed, 2015-08-19 15:47
Normal topic backrub mover
by sunlufinal » Sat, 2012-11-24 04:46
8
4,275 by jadolfbr
Tue, 2015-08-18 00:53
Normal topic PyMOL did not work from a remote machine with PyRosetta
by Jeremy1990 » Sat, 2015-08-08 21:25
1
713 by rmoretti
Wed, 2015-08-12 10:29
Normal topic fragment building
by StevPChem » Tue, 2015-08-04 09:01
3
981 by StevPChem
Thu, 2015-08-06 11:07
Normal topic Complex DNA Protein docking
by kim-nguyen » Wed, 2015-07-22 13:49
2
1,231 by kim-nguyen
Fri, 2015-07-24 23:04
Hot topic Score Function weights
by thorx020 » Sun, 2012-08-12 13:59
24
15,033 by msun
Fri, 2015-07-10 11:03
Normal topic Ligand dihedral moves
by lah435 » Tue, 2015-03-03 11:56
1
682 by rmoretti
Fri, 2015-04-24 13:17
Normal topic pymover = PyMOL_Mover() hangs IPython?
by cossio » Fri, 2015-04-10 07:38
4
1,410 by cossio
Wed, 2015-04-15 12:31
Normal topic Reducing PyRosetta memory usage
by ajasja » Fri, 2014-10-03 01:51
4
2,010 by Sergey
Fri, 2015-04-10 11:25
Normal topic "No Python class registered..." when trying to access SymDofs
by pitmand » Tue, 2015-03-17 14:29
3
1,544 by Sergey
Fri, 2015-03-27 14:34
Normal topic PyRosetta surface docking not working
by cgautier » Mon, 2015-03-16 05:45
6
2,296 by Sergey
Wed, 2015-03-18 11:22
Normal topic number of residues in a specific chain
by felipet » Mon, 2015-03-09 09:30
1
746 by jadolfbr
Mon, 2015-03-09 12:54
Normal topic RosettaModel blueprint for PyRosetta
by bbrown11 » Tue, 2015-03-03 13:53
2
912 by bbrown11
Wed, 2015-03-04 18:49
Normal topic Windows Dunbrack10.lib.bin "out dated"
by protos_heis » Thu, 2015-02-26 13:35
2
973 by protos_heis
Fri, 2015-02-27 13:38
Normal topic London
by MarkW » Sun, 2015-02-08 14:14
0
859 by MarkW
Sun, 2015-02-08 14:14
Normal topic PyRosetta AbInitio Folding protocol
by batch2k » Tue, 2009-12-15 11:09
7
4,794 by jadolfbr
Thu, 2015-02-05 10:32
Normal topic About missing disulfide partners for residue...
by Mon » Wed, 2014-12-17 05:37
3
1,678 by jadolfbr
Thu, 2014-12-18 09:37
Normal topic pose_from_pdb gives RuntimeError: unidentifiable C++ exception?
by cossio » Thu, 2014-11-27 14:43
1
1,064 by cossio
Fri, 2014-11-28 05:05
Normal topic Coordinates in pose do not match those in PDB
by ajasja » Tue, 2014-10-28 12:29
2
1,063 by ajasja
Thu, 2014-10-30 08:32
Normal topic Generating random number using numeric.random
by resiros » Thu, 2014-10-23 09:25
3
1,158 by rmoretti
Wed, 2014-10-29 10:00
Normal topic Enumerating torsion (dihedral) angles
by ajasja » Wed, 2014-10-01 09:10
2
1,286 by rmoretti
Mon, 2014-10-06 15:10
Normal topic Residue.set_chi() does not update internal state?
by ajasja » Wed, 2014-09-24 09:19
5
2,954 by rmoretti
Mon, 2014-10-06 14:37
Normal topic I don't know what's the problem when load the fragment file
by john8611 » Mon, 2014-09-29 03:45
5
2,126 by rmoretti
Tue, 2014-09-30 13:16
Normal topic Iterating over graph edges in PyRosetta.
by ajasja » Mon, 2014-09-22 07:21
3
1,348 by rmoretti
Mon, 2014-09-29 00:06
Normal topic Displaying side-chain rotamers in PyMol
by ajasja » Wed, 2014-09-24 08:57
0
867 by ajasja
Wed, 2014-09-24 08:57
Normal topic Getting chi rotamers
by ajasja » Tue, 2014-08-26 12:11
3
1,380 by rmoretti
Tue, 2014-09-23 08:36
Hot topic Making mutations in PyRosetta?
by thorx020 » Thu, 2012-08-09 09:24
15
7,312 by ajasja
Mon, 2014-09-22 10:17
Normal topic Forum webpage not working
by ajasja » Mon, 2014-09-22 06:14
2
814 by ajasja
Mon, 2014-09-22 09:53
Normal topic Large Memory usage in Windows r10 Build
by ajasja » Fri, 2014-08-22 09:09
4
2,799 by ajasja
Mon, 2014-09-22 09:51
Normal topic Viewing and modifying hydrogen bond detection criteria
by promero » Tue, 2014-09-16 15:26
1
923 by rmoretti
Wed, 2014-09-17 07:29
Normal topic Inconsistencies in full atom energy calculations
by dsim » Tue, 2014-07-29 06:02
4
1,399 by dsim
Mon, 2014-09-15 07:47
Normal topic Error in loop modeling protocol its showing error "NameError: name 'ccd_closure' is not defined"
by jai_INMAS » Sun, 2013-10-20 05:22
1
910 by Labonte
Mon, 2014-09-08 09:13
Normal topic Missing residue coordinates in PDB files
by lanselibai » Thu, 2014-09-04 07:34
1
2,025 by rmoretti
Thu, 2014-09-04 11:36
Normal topic Can I export command line & result from iPython PyRosetta shell to a text file?
by lanselibai » Mon, 2014-08-25 04:05
2
1,231 by lanselibai
Tue, 2014-08-26 01:49
Normal topic New Windows build is available for download
by Sergey » Fri, 2014-07-18 13:50
2
1,054 by ajasja
Fri, 2014-08-22 08:32
Normal topic Nonstandard residue parameters fail
by lah435 » Wed, 2014-08-06 17:53
2
1,758 by lah435
Mon, 2014-08-18 17:23
Normal topic mutate_residue not working
by lanselibai » Mon, 2014-08-11 03:55
7
2,694 by lanselibai
Sun, 2014-08-17 07:30
Normal topic Calculating sasa per atom and atomid_map
by ioannis.f » Wed, 2014-08-13 05:26
1
841 by Sergey
Thu, 2014-08-14 11:54
Normal topic Can we have email alert for the reply?
by lanselibai » Wed, 2014-08-13 13:24
0
745 by lanselibai
Wed, 2014-08-13 13:24
Normal topic task_pack.restrict_to_repacking() not working
by lanselibai » Mon, 2014-08-11 08:06
1
704 by rmoretti
Tue, 2014-08-12 08:35
Normal topic Argument error when running D120_Ligand_interface.py
by piladam » Wed, 2014-07-09 10:43
5
2,494 by rmoretti
Mon, 2014-07-21 11:15
Normal topic pose_from_sequence with modified residue
by nawsad » Wed, 2014-06-25 02:59
4
1,655 by nawsad
Sun, 2014-07-13 00:49
Normal topic Approximating CHARMM energy by the rosetta scoring function
by ajasja » Fri, 2014-06-20 02:16
4
2,086 by ajasja
Thu, 2014-07-03 05:53
Normal topic Problems when inserting spin-label R1A
by ajasja » Fri, 2014-06-27 04:14
2
1,107 by ajasja
Thu, 2014-07-03 05:36
Normal topic Capturing the output of scorefxn.show(pose)
by ajasja » Fri, 2014-06-20 05:30
2
1,390 by ajasja
Sat, 2014-06-21 11:57
Normal topic Getting which rigid body a residue belongs to?
by JuliusSu » Thu, 2014-04-17 21:12
3
1,483 by jadolfbr
Mon, 2014-04-21 17:28
Normal topic Quadratic Function for Distance Constraints?
by protos_heis » Mon, 2014-01-27 06:21
4
1,445 by protos_heis
Mon, 2014-04-21 06:48
Normal topic How to calculate the pairwise rotamer-to-rotamer energy table between mutable residues allowed to change to all amino acid types
by AyushGoyal » Wed, 2014-01-22 16:24
7
3,204 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Amino acid modifications: retinal linked to lysine
by tsikosek » Tue, 2014-01-21 12:52
1
1,371 by rmoretti
Mon, 2014-04-21 06:48
Normal topic is_aromatic function
by jadolfbr » Mon, 2013-12-02 19:31
2
1,011 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Alignment and RMSD
by ñ » Wed, 2013-11-27 12:43
5
3,500 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Rotamer information from pose
by AyushGoyal » Wed, 2014-01-15 14:37
7
3,150 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Symmetric pose initialization fails
by gudmal » Tue, 2013-11-26 06:42
3
1,395 by Sergey
Mon, 2014-04-21 06:48
Normal topic Protein docking with PyRosetta Error!
by Apiwat » Sat, 2014-01-11 23:32
3
1,969 by Apiwat
Mon, 2014-04-21 06:48
Normal topic Fragments file
by Run » Tue, 2013-11-26 02:40
4
1,773 by rmoretti
Mon, 2014-04-21 06:48
Normal topic GDT_TS how can I get it with pyrosetta?
by oppopomoz » Thu, 2014-01-09 02:51
1
1,083 by rmoretti
Mon, 2014-04-21 06:48
Normal topic loop modeling error 'CcdLoopClosureMover' object is not callable
by jai_INMAS » Tue, 2013-10-22 01:49
2
1,312 by jai_INMAS
Mon, 2014-04-21 06:48
Normal topic change dihedral angles of any residue
by bharat_46010 » Fri, 2013-11-15 00:30
3
1,738 by bharat_46010
Mon, 2014-04-21 06:48
Normal topic Documentation of ``mysterious'' protocols
by ñ » Wed, 2013-10-30 08:19
3
1,634 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Error in loop modeling protocol
by jai_INMAS » Fri, 2013-10-18 07:08
5
2,159 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Regarding the Documentation of Rosetta and PyRosetta
by jai_INMAS » Tue, 2013-10-22 23:41
3
1,544 by jai_INMAS
Mon, 2014-04-21 06:48
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