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PyRosetta - General

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 01:38
1
17,747 by Sergey
Fri, 2015-09-04 16:14
Normal topic Passing a dictionary from pyrosetta to rosetta
by SenyorDrew » Mon, 2017-11-13 11:33
0
41 by SenyorDrew
Mon, 2017-11-13 11:33
Normal topic rosetta.core.pack.pack_rotamers_setup(pose, score_fxn, task_design, rotsets) not working
by tschiex » Sun, 2017-11-05 08:29
0
26 by tschiex
Sun, 2017-11-05 08:29
Normal topic Using ref2015 and talaris2014 in the same script
by SenyorDrew » Wed, 2017-11-01 10:24
2
63 by SenyorDrew
Wed, 2017-11-01 10:39
Normal topic Determine residues where Backrub Mover is applied
by jferrie » Fri, 2017-10-27 08:19
0
42 by jferrie
Fri, 2017-10-27 08:19
Normal topic Using InterfaceSasaFilter
by SenyorDrew » Thu, 2017-10-26 07:53
2
58 by SenyorDrew
Thu, 2017-10-26 13:30
Normal topic Docking between peptide and lipid-biayer
by sprinkle166 » Thu, 2017-10-26 08:35
0
34 by sprinkle166
Thu, 2017-10-26 08:35
Normal topic Which function can be use for mutation?
by sprinkle166 » Wed, 2017-10-18 09:10
2
69 by sprinkle166
Thu, 2017-10-19 12:57
Normal topic Where can I found the dictory of all function of Pyrosetta?
by sprinkle166 » Mon, 2017-10-16 13:58
2
61 by sprinkle166
Wed, 2017-10-18 09:06
Normal topic Fragment Picking in PyRosetta
by ac.research » Thu, 2017-08-31 04:48
9
350 by rmoretti
Tue, 2017-10-10 09:16
Normal topic Mistake about rosetta.init()
by sprinkle166 » Tue, 2017-09-26 09:46
3
142 by sprinkle166
Wed, 2017-09-27 09:17
Normal topic Problem about Pyrosetta installation win7
by sprinkle166 » Mon, 2017-09-04 20:15
5
224 by sprinkle166
Fri, 2017-09-08 12:57
Normal topic Question about gradient of energy function
by kyler » Tue, 2017-08-22 14:09
7
321 by rmoretti
Tue, 2017-09-05 10:05
Normal topic PSIPRED secondary structure prediction in PyRosetta
by ac.research » Fri, 2017-09-01 22:56
1
105 by rmoretti
Mon, 2017-09-04 09:52
Normal topic PyRosetta Global Docking
by ac.research » Sat, 2017-08-26 03:31
2
140 by Sergey
Thu, 2017-08-31 04:39
Normal topic Muting output in pyrosetta
by SenyorDrew » Mon, 2017-08-14 08:13
6
243 by SenyorDrew
Tue, 2017-08-15 07:41
Normal topic Score Function with Constraints
by ac.research » Fri, 2017-07-28 06:41
5
286 by rmoretti
Mon, 2017-08-14 08:26
Normal topic Fragment Quality
by ac.research » Mon, 2017-07-10 10:23
9
522 by ac.research
Fri, 2017-07-14 12:55
Normal topic RosettaHoles for PyRosetta - Void Detection/Scoring
by ac.research » Sat, 2017-07-01 11:28
5
306 by rmoretti
Thu, 2017-07-06 12:49
Normal topic How To Read PyRosetta Documentation - GenericMonteCarloMover as example
by ac.research » Wed, 2017-07-05 09:08
2
169 by ac.research
Thu, 2017-07-06 11:09
Normal topic PyRosetta FastDesign
by ac.research » Tue, 2017-07-04 10:23
9
483 by ac.research
Wed, 2017-07-05 16:59
Normal topic SASA of pose
by ac.research » Mon, 2017-06-26 03:55
2
193 by ac.research
Fri, 2017-06-30 05:44
Normal topic Repeat study
by thomashrabe » Tue, 2017-06-20 11:21
2
177 by parmef
Sat, 2017-06-24 03:18
Normal topic generate_nonstandard_residue_set Exception
by lah435 » Tue, 2017-06-13 18:28
3
261 by lah435
Fri, 2017-06-16 12:24
Normal topic Reading constraints from a file
by lah435 » Wed, 2017-06-14 18:56
2
257 by rmoretti
Fri, 2017-06-16 07:22
Normal topic Fold Tutorial
by ac.research » Sat, 2017-06-03 19:39
7
464 by smlewis
Sat, 2017-06-10 15:15
Normal topic Cutout part of a protein
by ac.research » Wed, 2017-05-31 11:55
2
196 by jadolfbr
Sat, 2017-06-03 19:20
Normal topic Energy scores of D-amino acids
by jshen2 » Mon, 2017-05-08 10:15
7
505 by jshen2
Sat, 2017-05-13 08:14
Normal topic hbond_sr_bb, hbond_lr_bb, fa_intra_rep energies from ScoreFunction()
by gerdos » Tue, 2017-04-18 04:46
4
384 by gerdos
Fri, 2017-04-21 01:53
Normal topic Creating rotamers, computing pairwise and total energies
by gerdos » Wed, 2017-04-12 02:57
6
488 by gerdos
Tue, 2017-04-18 10:15
Normal topic Libmini crashes after protocol run
by whooper » Tue, 2017-01-31 09:48
1
334 by Sergey
Tue, 2017-01-31 13:42
Normal topic Writing out individual residues to a pdbfile
by SenyorDrew » Thu, 2016-12-08 07:33
3
627 by SenyorDrew
Thu, 2016-12-08 13:10
Normal topic Symmetric design with PyRosetta
by dsim » Thu, 2016-11-17 07:50
9
1,242 by dsim
Tue, 2016-11-22 08:11
Normal topic How to use SAXS energy score in PyRosetta
by Jie Hou » Mon, 2016-09-05 08:31
5
1,147 by rmoretti
Mon, 2016-11-14 13:21
Normal topic Glycan minimization
by seanle24245 » Thu, 2016-10-06 13:51
1
340 by Labonte
Thu, 2016-10-06 14:05
Normal topic Relaxing experimental structure
by aloctavodia » Thu, 2016-09-29 03:46
8
1,522 by aloctavodia
Thu, 2016-10-06 03:29
Normal topic Convert Rotamer Vector to Chi Angles
by L-Allanine » Sat, 2016-07-30 09:16
1
388 by rmoretti
Mon, 2016-09-05 10:35
Normal topic Creating FeatureReporters in PyRosetta
by LiorZ » Tue, 2016-08-23 23:50
7
1,233 by smlewis
Wed, 2016-08-24 14:23
Normal topic Glycan in IgG1 Fc
by seanle24245 » Fri, 2016-07-22 07:50
2
580 by jadolfbr
Fri, 2016-07-22 10:29
Normal topic How to combine two chains
by seanle24245 » Tue, 2016-07-19 07:54
5
1,303 by seanle24245
Fri, 2016-07-22 06:53
Normal topic How to call SnugDock from PyRosetta
by SenyorDrew » Tue, 2016-06-21 07:28
1
437 by jeliazkov
Fri, 2016-07-01 08:42
Normal topic How to set up external C++ folding server
by seanle24245 » Sat, 2016-06-11 10:54
8
1,798 by seanle24245
Sun, 2016-06-19 18:30
Normal topic How to determine interface residues
by rbehan » Wed, 2015-10-14 11:25
2
1,206 by rmoretti
Fri, 2016-06-17 09:25
Normal topic PyRosetta memory footprint
by LiorZ » Thu, 2016-06-16 04:36
3
752 by LiorZ
Fri, 2016-06-17 08:20
Normal topic mutate_residue doesn't mutate
by dsim » Wed, 2015-03-18 02:32
6
2,204 by rmoretti
Fri, 2016-04-29 09:48
Normal topic cartesian space minimization
by bystrc » Fri, 2014-03-28 14:17
10
5,587 by rmoretti
Thu, 2016-02-18 14:22
Normal topic Rigid body perturbation while docking
by wajidarshad » Fri, 2015-12-11 02:14
1
672 by rmoretti
Wed, 2015-12-16 11:25
Normal topic ClassicRelax: how to block the backbone
by oppopomoz » Fri, 2015-11-27 08:17
3
1,221 by rmoretti
Tue, 2015-12-01 15:18
Normal topic How does Rosetta select atom pairs for Lennard Jones Potential calculations?
by bowang2013 » Thu, 2015-10-29 08:04
4
1,636 by smlewis
Tue, 2015-11-03 09:17
Normal topic RuntimeError: unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:16
1
699 by rmoretti
Tue, 2015-10-27 08:46
Normal topic Using a custom scoring method in a high resolution refinement
by kalabharath » Sun, 2015-10-25 22:28
1
665 by rmoretti
Mon, 2015-10-26 13:57
Normal topic Parsing XML tags using pyrosetta
by rbehan » Mon, 2015-10-19 06:37
1
586 by rmoretti
Mon, 2015-10-19 08:25
Normal topic pose.replace_residue() & incorrect scoring
by msun » Tue, 2015-10-06 10:51
3
1,100 by rmoretti
Wed, 2015-10-07 16:35
Normal topic add missing residues into rna
by galvaner » Tue, 2015-09-15 16:41
3
1,202 by galvaner
Mon, 2015-09-21 13:37
Normal topic Pypy not working, python works...
by MarkW » Thu, 2015-03-05 05:15
4
2,328 by MarkW
Mon, 2015-08-24 04:43
Normal topic Namespace PyRosetta Build for Windows?
by protos_heis » Sat, 2015-08-15 10:49
3
1,337 by Sergey
Wed, 2015-08-19 15:47
Normal topic backrub mover
by sunlufinal » Sat, 2012-11-24 04:46
8
4,812 by jadolfbr
Tue, 2015-08-18 00:53
Normal topic PyMOL did not work from a remote machine with PyRosetta
by Jeremy1990 » Sat, 2015-08-08 21:25
1
812 by rmoretti
Wed, 2015-08-12 10:29
Normal topic fragment building
by StevPChem » Tue, 2015-08-04 09:01
3
1,164 by StevPChem
Thu, 2015-08-06 11:07
Normal topic Complex DNA Protein docking
by kim-nguyen » Wed, 2015-07-22 13:49
2
1,377 by kim-nguyen
Fri, 2015-07-24 23:04
Hot topic Score Function weights
by thorx020 » Sun, 2012-08-12 13:59
24
16,446 by msun
Fri, 2015-07-10 11:03
Normal topic Ligand dihedral moves
by lah435 » Tue, 2015-03-03 11:56
1
773 by rmoretti
Fri, 2015-04-24 13:17
Normal topic pymover = PyMOL_Mover() hangs IPython?
by cossio » Fri, 2015-04-10 07:38
4
1,614 by cossio
Wed, 2015-04-15 12:31
Normal topic Reducing PyRosetta memory usage
by ajasja » Fri, 2014-10-03 01:51
4
2,249 by Sergey
Fri, 2015-04-10 11:25
Normal topic "No Python class registered..." when trying to access SymDofs
by pitmand » Tue, 2015-03-17 14:29
3
1,751 by Sergey
Fri, 2015-03-27 14:34
Normal topic PyRosetta surface docking not working
by cgautier » Mon, 2015-03-16 05:45
6
2,636 by Sergey
Wed, 2015-03-18 11:22
Normal topic number of residues in a specific chain
by felipet » Mon, 2015-03-09 09:30
1
820 by jadolfbr
Mon, 2015-03-09 12:54
Normal topic RosettaModel blueprint for PyRosetta
by bbrown11 » Tue, 2015-03-03 13:53
2
1,040 by bbrown11
Wed, 2015-03-04 18:49
Normal topic Windows Dunbrack10.lib.bin "out dated"
by protos_heis » Thu, 2015-02-26 13:35
2
1,111 by protos_heis
Fri, 2015-02-27 13:38
Normal topic London
by MarkW » Sun, 2015-02-08 14:14
0
916 by MarkW
Sun, 2015-02-08 14:14
Normal topic PyRosetta AbInitio Folding protocol
by batch2k » Tue, 2009-12-15 11:09
7
5,184 by jadolfbr
Thu, 2015-02-05 10:32
Normal topic About missing disulfide partners for residue...
by Mon » Wed, 2014-12-17 05:37
3
1,903 by jadolfbr
Thu, 2014-12-18 09:37
Normal topic pose_from_pdb gives RuntimeError: unidentifiable C++ exception?
by cossio » Thu, 2014-11-27 14:43
1
1,159 by cossio
Fri, 2014-11-28 05:05
Normal topic Coordinates in pose do not match those in PDB
by ajasja » Tue, 2014-10-28 12:29
2
1,172 by ajasja
Thu, 2014-10-30 08:32
Normal topic Generating random number using numeric.random
by resiros » Thu, 2014-10-23 09:25
3
1,306 by rmoretti
Wed, 2014-10-29 10:00
Normal topic Enumerating torsion (dihedral) angles
by ajasja » Wed, 2014-10-01 09:10
2
1,433 by rmoretti
Mon, 2014-10-06 15:10
Normal topic Residue.set_chi() does not update internal state?
by ajasja » Wed, 2014-09-24 09:19
5
3,145 by rmoretti
Mon, 2014-10-06 14:37
Normal topic I don't know what's the problem when load the fragment file
by john8611 » Mon, 2014-09-29 03:45
5
2,382 by rmoretti
Tue, 2014-09-30 13:16
Normal topic Iterating over graph edges in PyRosetta.
by ajasja » Mon, 2014-09-22 07:21
3
1,515 by rmoretti
Mon, 2014-09-29 00:06
Normal topic Displaying side-chain rotamers in PyMol
by ajasja » Wed, 2014-09-24 08:57
0
960 by ajasja
Wed, 2014-09-24 08:57
Normal topic Getting chi rotamers
by ajasja » Tue, 2014-08-26 12:11
3
1,580 by rmoretti
Tue, 2014-09-23 08:36
Hot topic Making mutations in PyRosetta?
by thorx020 » Thu, 2012-08-09 09:24
15
8,040 by ajasja
Mon, 2014-09-22 10:17
Normal topic Forum webpage not working
by ajasja » Mon, 2014-09-22 06:14
2
903 by ajasja
Mon, 2014-09-22 09:53
Normal topic Large Memory usage in Windows r10 Build
by ajasja » Fri, 2014-08-22 09:09
4
3,000 by ajasja
Mon, 2014-09-22 09:51
Normal topic Viewing and modifying hydrogen bond detection criteria
by promero » Tue, 2014-09-16 15:26
1
1,030 by rmoretti
Wed, 2014-09-17 07:29
Normal topic Inconsistencies in full atom energy calculations
by dsim » Tue, 2014-07-29 06:02
4
1,588 by dsim
Mon, 2014-09-15 07:47
Normal topic Error in loop modeling protocol its showing error "NameError: name 'ccd_closure' is not defined"
by jai_INMAS » Sun, 2013-10-20 05:22
1
976 by Labonte
Mon, 2014-09-08 09:13
Normal topic Missing residue coordinates in PDB files
by lanselibai » Thu, 2014-09-04 07:34
1
2,211 by rmoretti
Thu, 2014-09-04 11:36
Normal topic Can I export command line & result from iPython PyRosetta shell to a text file?
by lanselibai » Mon, 2014-08-25 04:05
2
1,349 by lanselibai
Tue, 2014-08-26 01:49
Normal topic New Windows build is available for download
by Sergey » Fri, 2014-07-18 13:50
2
1,158 by ajasja
Fri, 2014-08-22 08:32
Normal topic Nonstandard residue parameters fail
by lah435 » Wed, 2014-08-06 17:53
2
1,869 by lah435
Mon, 2014-08-18 17:23
Normal topic mutate_residue not working
by lanselibai » Mon, 2014-08-11 03:55
7
3,103 by lanselibai
Sun, 2014-08-17 07:30
Normal topic Calculating sasa per atom and atomid_map
by ioannis.f » Wed, 2014-08-13 05:26
1
949 by Sergey
Thu, 2014-08-14 11:54
Normal topic Can we have email alert for the reply?
by lanselibai » Wed, 2014-08-13 13:24
0
800 by lanselibai
Wed, 2014-08-13 13:24
Normal topic task_pack.restrict_to_repacking() not working
by lanselibai » Mon, 2014-08-11 08:06
1
776 by rmoretti
Tue, 2014-08-12 08:35
Normal topic Argument error when running D120_Ligand_interface.py
by piladam » Wed, 2014-07-09 10:43
5
3,102 by rmoretti
Mon, 2014-07-21 11:15
Normal topic pose_from_sequence with modified residue
by nawsad » Wed, 2014-06-25 02:59
4
1,847 by nawsad
Sun, 2014-07-13 00:49
Normal topic Approximating CHARMM energy by the rosetta scoring function
by ajasja » Fri, 2014-06-20 02:16
4
2,335 by ajasja
Thu, 2014-07-03 05:53
Normal topic Problems when inserting spin-label R1A
by ajasja » Fri, 2014-06-27 04:14
2
1,232 by ajasja
Thu, 2014-07-03 05:36
Normal topic Capturing the output of scorefxn.show(pose)
by ajasja » Fri, 2014-06-20 05:30
2
1,521 by ajasja
Sat, 2014-06-21 11:57
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