You are here

PyRosetta - General

Pages

Topic / Topic starter Replies Views Last postsort ascending
Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 01:38
1
22,775 by Sergey
Fri, 2015-09-04 16:14
Normal topic Rotamers one- and two-body energies
by ajfmdm » Thu, 2024-04-04 00:48
3
382 by ajfmdm
Wed, 2024-05-29 05:39
Normal topic Segmentation fault encountered using Interface
by WenyuanW » Tue, 2024-04-02 13:41
0
88 by WenyuanW
Tue, 2024-04-02 13:41
Normal topic How can I automate mutations with PyRosetta or other Rosetta software?
by archaeopteryx » Mon, 2023-07-03 19:35
7
1,884 by arjan-hada
Sat, 2024-01-27 05:48
Normal topic cartesian delta delta G
by patcD » Wed, 2021-02-10 01:46
4
4,203 by arjan-hada
Sat, 2024-01-27 05:45
Normal topic What is the meaning of "JUMP" in rigid.RigidBodyTransMover(pose,JUMP)?
by lanselibai » Sat, 2023-10-28 09:49
1
555 by rmoretti
Mon, 2023-10-30 08:43
Normal topic Different results FastRelax pyrosetta vs rosetta_scripts
by karenjgonzalez » Tue, 2023-06-20 09:52
2
794 by karenjgonzalez
Fri, 2023-08-11 10:57
Normal topic Minimizing a Symmetric Structure
by ammar.x.gilani » Wed, 2023-08-02 11:10
0
364 by ammar.x.gilani
Wed, 2023-08-02 11:10
Normal topic Post-traslational modifications
by diegoms » Wed, 2023-06-21 01:22
4
1,239 by diegoms
Wed, 2023-08-02 01:18
Normal topic Set torsions for atoms in different residues
by mluengo » Fri, 2023-05-12 03:07
0
415 by mluengo
Fri, 2023-05-12 03:07
Normal topic Challenge with applying AntibodyCDRGrafter method and MinMover method
by kylevaccaro » Sat, 2023-02-18 21:41
1
1,479 by nannemdp
Sun, 2023-02-19 12:05
Normal topic How does one convert a PDB file of an antibody to AHO scheme?
by kylevaccaro » Mon, 2023-02-13 18:14
2
1,620 by kylevaccaro
Wed, 2023-02-15 19:18
Normal topic Applying RMSD constraints using pyrosetta or Rosettascripts
by chenna » Thu, 2023-02-09 05:37
2
1,773 by chenna
Fri, 2023-02-10 05:37
Normal topic Problem importing AlphaFold PDB
by Rick Neubig » Mon, 2023-01-09 09:48
4
2,493 by Rick Neubig
Tue, 2023-01-10 04:11
Normal topic "corrupted" small molecules. aromatic rings get distortet during relax
by patcD » Thu, 2022-07-21 04:51
1
3,308 by rmoretti
Thu, 2022-07-21 07:14
Normal topic 403 on documentation for PyRosetta
by matteoferla » Mon, 2022-06-06 12:19
1
2,602 by rmoretti
Mon, 2022-06-06 12:35
Normal topic Is this the intended behaviour?
by Ken » Thu, 2022-05-05 14:59
2
2,784 by Ken
Fri, 2022-05-06 07:03
Normal topic Protein docking with PyRosetta Error!
by Apiwat » Sat, 2014-01-11 23:32
4
7,190 by shivarawat115
Mon, 2022-04-11 16:03
Normal topic How does min_mover work?
by anidude » Fri, 2022-03-04 07:30
1
2,192 by matteoferla
Sun, 2022-03-20 02:53
Normal topic Atom mapping in RMSD functions
by gkell » Tue, 2022-02-15 15:48
1
1,246 by rmoretti
Fri, 2022-02-18 10:23
Normal topic Acessing energies terms from energy.show() table
by João Sartori » Mon, 2022-02-07 07:56
2
1,517 by João Sartori
Wed, 2022-02-09 04:35
Normal topic Pose is full atom and mover expects centroid, how do I handle it the best?
by hlinn » Thu, 2022-01-27 05:55
4
2,367 by hlinn
Tue, 2022-02-08 07:23
Normal topic ΔΔG Calculation of a Mutation with PyRosetta
by akaashvenkat » Fri, 2018-03-09 01:44
13
14,420 by matteoferla
Wed, 2022-01-12 01:20
Normal topic any examples of calling SnugDock from pyrosetta?
by antonkulaga » Thu, 2021-12-23 16:13
1
1,241 by matteoferla
Mon, 2022-01-10 07:14
Normal topic Questions of Cartesian_ddG calculation in PyRosetta
by CKS2001 » Fri, 2022-01-07 01:36
2
2,092 by CKS2001
Sat, 2022-01-08 02:14
Normal topic Collect data about the modelling
by Roberto » Thu, 2022-01-06 01:43
0
760 by Roberto
Thu, 2022-01-06 01:43
Normal topic Calling SnugDock from PyRosetta
by shruthi.murali » Wed, 2020-07-29 15:10
4
3,404 by antonkulaga
Thu, 2021-12-23 16:07
Normal topic Symmetry breaks due to small structure gaps
by dbiedermann » Mon, 2021-09-20 17:39
0
863 by dbiedermann
Mon, 2021-09-20 17:40
Normal topic Explicit water
This topic has been moved to "Rosetta 3 - General " (View topic)
Normal topic restricted fast relax changes whole structure?
by patcD » Wed, 2021-08-25 02:05
2
2,166 by patcD
Wed, 2021-09-01 03:30
Normal topic Molfile to params creating invalid params output
by edan » Sun, 2021-08-29 01:54
1
1,354 by tsztain
Sun, 2021-08-29 11:15
Normal topic Less silly way to get number of iterations of Relax
by matteoferla » Tue, 2021-07-20 07:00
2
1,807 by matteoferla
Tue, 2021-07-20 13:44
Normal topic How to create an ObjexxFCL FArray?
by matteoferla » Tue, 2020-08-18 03:22
3
2,351 by matteoferla
Thu, 2021-07-08 06:02
Normal topic Hydrogen Bonding Distances and Atom identification
by kmolloy717 » Fri, 2021-06-25 08:15
1
1,569 by matteoferla
Wed, 2021-06-30 09:02
Normal topic FastRelax results in bad structure
by Eden » Mon, 2021-04-26 08:39
2
1,907 by Eden
Wed, 2021-06-23 01:13
Normal topic pyrosetta die slow
by Eden » Sun, 2021-06-13 00:05
2
1,684 by Eden
Mon, 2021-06-14 23:10
Normal topic Atom-wise energy terms from nearest N-neighbors
by jasiozaucha » Thu, 2021-03-25 14:49
3
2,437 by matteoferla
Fri, 2021-05-28 02:41
Normal topic RosettaModel blueprint for PyRosetta
by bbrown11 » Tue, 2015-03-03 13:53
3
4,747 by matteoferla
Thu, 2021-04-29 06:30
Normal topic Pyrosetta score protein structures with missing atoms in sidechain
by xuezhi » Fri, 2021-04-09 13:33
1
1,376 by matteoferla
Sat, 2021-04-10 07:18
Normal topic Best way to store a pose by Pyrosetta for Pyrosetta
by matteoferla » Wed, 2021-04-07 06:50
0
2,203 by matteoferla
Wed, 2021-04-07 06:50
Normal topic Protocol for adding/mutating non-canonical AA
by joeri » Thu, 2021-03-25 08:14
1
1,752 by matteoferla
Tue, 2021-03-30 08:20
Normal topic Protocol for adding/mutating non-canonical AA
by joeri » Thu, 2021-03-25 08:14
2
2,013 by vmulligan
Mon, 2021-03-29 10:39
Normal topic Calculate TM-score
by nasim.soltani58 » Fri, 2021-03-26 16:50
1
2,688 by rmoretti
Mon, 2021-03-29 06:53
Normal topic How to relax glycans after glycosylating sites on a pose?
by sdtruong » Mon, 2021-03-22 09:44
2
1,731 by sdtruong
Mon, 2021-03-22 17:05
Normal topic Alternatives to DockMCMProtocol
by swirt » Thu, 2021-01-28 17:37
4
2,955 by swirt
Thu, 2021-02-25 21:54
Normal topic Individual Residue Energy
by Peik » Fri, 2021-02-19 10:13
2
2,497 by Peik
Fri, 2021-02-19 10:30
Normal topic Error with importing the pdb file
by nasim.soltani58 » Fri, 2020-12-18 22:46
1
1,945 by matteoferla
Tue, 2021-01-05 04:05
Normal topic How do I insert or delete residues into specific locations?
by Mgerber@mail.yu.edu » Sun, 2020-12-20 15:03
1
1,769 by matteoferla
Tue, 2021-01-05 03:53
Normal topic Different types of MinMover
by nasim.soltani58 » Sun, 2020-12-20 11:44
2
1,985 by nasim.soltani58
Tue, 2020-12-22 13:37
Normal topic Using pyrosetta to generate quaternary structure of protein
by nasim.soltani58 » Thu, 2020-11-19 17:35
5
3,512 by nasim.soltani58
Tue, 2020-12-08 22:45
Normal topic Assesing the docking
by nasim.soltani58 » Sat, 2020-12-05 21:19
2
1,958 by nasim.soltani58
Tue, 2020-12-08 22:44
Normal topic How do you combine two .pdb protein structure files of the same protein?
by nasim.soltani58 » Sun, 2020-11-22 23:14
4
5,778 by nasim.soltani58
Tue, 2020-12-08 22:44
Normal topic Extending Pyrosetta toturials for docking by adding constraints
by nasim.soltani58 » Thu, 2020-11-26 13:16
1
1,453 by matteoferla
Wed, 2020-12-02 13:49
Normal topic how do i unding properly?
by patcD » Fri, 2020-11-20 00:38
2
2,381 by matteoferla
Fri, 2020-11-20 07:47
Normal topic Structure not changing after pose.set_phi
by publicclass » Thu, 2020-11-05 09:34
0
1,142 by publicclass
Thu, 2020-11-05 09:34
Normal topic WindowsError: [Error 32]
by jetu20 » Sun, 2020-10-11 21:02
0
1,105 by jetu20
Sun, 2020-10-11 21:02
Normal topic Custom Constraints
by jinli711 » Wed, 2020-07-15 15:22
2
2,419 by matteoferla
Fri, 2020-10-09 05:20
Normal topic Gradient Descent
by nasim.soltani58 » Thu, 2020-10-01 16:02
3
2,658 by vmulligan
Tue, 2020-10-06 15:13
Normal topic "Server Could Not Be Reached" although I have an Internet connection
by epi89 » Mon, 2020-09-28 21:32
1
1,724 by smlewis
Tue, 2020-09-29 12:00
Normal topic trRosetta modelling with a ligand
by ShiranBZ » Tue, 2020-08-25 01:44
0
1,469 by ShiranBZ
Tue, 2020-08-25 01:44
Normal topic Suggestion: setting Sphinx documentation to not skip __init__
by matteoferla » Mon, 2020-08-24 09:02
0
1,688 by matteoferla
Mon, 2020-08-24 09:02
Normal topic Compile C++ Rosetta to Pyrosetta
by michelleqyh » Fri, 2020-08-21 08:44
0
1,125 by michelleqyh
Fri, 2020-08-21 08:44
Normal topic Generating Atom Pair Constraints
by Peik » Wed, 2020-08-05 15:39
3
2,808 by Peik
Thu, 2020-08-06 11:50
Normal topic How can I insert my variable length fragmrnts library into pyrosetta?
by michelleqyh » Tue, 2020-08-04 07:26
0
982 by michelleqyh
Tue, 2020-08-04 07:26
Normal topic Best Way to Append/Insert Residue
by jaulicino » Tue, 2020-07-21 10:24
3
3,921 by matteoferla
Sat, 2020-07-25 03:52
Normal topic Segfault when loading scorefxn() and load_from_pdb()
by mm » Wed, 2020-07-22 03:00
0
1,070 by mm
Wed, 2020-07-22 03:02
Normal topic Adding a residue type to a residue type set
by matteoferla » Wed, 2020-07-08 08:14
2
2,921 by matteoferla
Fri, 2020-07-10 02:20
Normal topic ERROR: unrecognized element Rp when using pose_from_pdb
by johnnytam100 » Thu, 2020-07-09 02:53
3
3,091 by rmoretti
Thu, 2020-07-09 08:35
Normal topic Interface Analyzer with Glycans
by drewaight » Tue, 2020-06-09 20:06
1
1,600 by matteoferla
Wed, 2020-07-01 05:30
Normal topic Python3.8 release for Mac download is a dead link
by noahC_noahDo » Fri, 2020-06-26 18:20
0
1,119 by noahC_noahDo
Fri, 2020-06-26 18:20
Normal topic How to fold-and-dock in PyRosetta?
by sarah_b » Thu, 2020-05-14 02:37
0
1,302 by sarah_b
Thu, 2020-05-14 02:37
Normal topic Affinity optimization with GreedyOptMutationMover
by wentlewi » Thu, 2020-05-07 08:29
0
1,189 by wentlewi
Thu, 2020-05-07 12:33
Normal topic pose_from_rcsb error
by criss.hartzell » Wed, 2020-04-22 15:12
1
2,108 by matteoferla
Thu, 2020-04-30 12:04
Normal topic Pyrosetta imported after rdkit
by matteoferla » Sun, 2020-03-01 02:38
0
1,271 by matteoferla
Sun, 2020-03-01 02:38
Normal topic Rosetta get_fa_scorefxn()
by israeldesta » Thu, 2019-10-31 10:18
3
4,805 by jadolfbr
Thu, 2019-11-14 15:33
Normal topic Modeling small molecules
by iGemBoulder » Wed, 2019-09-18 11:53
2
2,523 by rmoretti
Wed, 2019-09-18 14:24
Normal topic Resfile Error
by ac.research » Wed, 2019-07-17 13:25
3
4,966 by vmulligan
Fri, 2019-07-26 15:08
Normal topic Designating Fold Tree Edges as Flexible or Rigid
by nleroy » Tue, 2019-07-23 11:34
3
3,072 by smlewis
Tue, 2019-07-23 13:27
Normal topic PyMOLMover object has no attribute 'link'
by nleroy » Mon, 2019-07-22 07:51
0
1,288 by nleroy
Mon, 2019-07-22 07:51
Normal topic Classic Relax
by iGemBoulder » Fri, 2019-06-28 09:24
2
2,728 by sheehajh
Wed, 2019-07-17 12:43
Normal topic PyRosetta on a HPC
by ac.research » Thu, 2019-03-14 02:00
1
1,981 by rmoretti
Wed, 2019-07-10 10:17
Normal topic set_torsion_angle error
by yijietseng » Tue, 2019-07-09 12:43
2
2,374 by yijietseng
Wed, 2019-07-10 09:28
Normal topic Score bonus to hbond
by yijietseng » Fri, 2019-07-05 12:28
1
1,770 by rmoretti
Tue, 2019-07-09 09:42
Normal topic Question about the error when using pyrosetta.distributed.io
by cuiyoutian » Sun, 2019-05-19 00:54
1
2,592 by rmoretti
Mon, 2019-06-24 12:54
Normal topic ΔG Calculation with PyRosetta
by Sandra » Tue, 2019-05-21 00:26
1
2,475 by rmoretti
Mon, 2019-06-24 12:47
Normal topic Residue is not compatible with cutpoints
by iGemBoulder » Thu, 2019-06-06 08:57
2
2,764 by iGemBoulder
Tue, 2019-06-11 08:36
Normal topic individual residue score
by yijietseng » Wed, 2019-05-29 09:59
2
2,434 by yijietseng
Fri, 2019-05-31 12:21
Normal topic Relax with constraints
by yijietseng » Tue, 2019-05-07 11:16
2
3,349 by yijietseng
Wed, 2019-05-22 09:54
Normal topic Movers for unspecified DoF
by tfobe » Wed, 2019-04-17 17:30
2
2,585 by tfobe
Mon, 2019-05-20 16:05
Normal topic Error when trying to import 'get_secstruct'
by quantumnumber » Thu, 2019-04-11 03:50
4
5,301 by quantumnumber
Fri, 2019-05-10 02:25
Normal topic Motif Graft Mover error
by ac.research » Tue, 2019-03-26 13:25
1
2,258 by rmoretti
Thu, 2019-05-09 15:56
Normal topic Adding Custom AtomTypes to Pyrosetta
by garrettameek » Wed, 2019-03-13 15:06
1
1,934 by rmoretti
Thu, 2019-05-09 15:06
Normal topic DockingHighResLegacy repacks all sidechains on first apply(), interface sidechains on subsequent apply()
by msellers » Wed, 2012-02-22 22:46
4
5,657 by rmoretti
Thu, 2019-05-09 15:03
Normal topic Need help figuring out the meaning and cause of an error
by AleksanderK » Fri, 2019-05-03 11:02
1
2,080 by rmoretti
Thu, 2019-05-09 14:32
Normal topic Error with etable_atom_pair_energies()
by yijietseng » Mon, 2019-01-28 14:00
2
3,400 by yijietseng
Tue, 2019-05-07 11:02
Normal topic Noob question about optimizing a pose
by AleksanderK » Fri, 2019-04-26 10:49
3
3,266 by AleksanderK
Fri, 2019-05-03 10:57
Normal topic newbie question re pose syntax
by Amy F » Mon, 2019-04-15 12:50
10
9,154 by jadolfbr
Wed, 2019-04-24 10:12
Normal topic Error when using "generate_resfile_from_pose" function
by zhangying1990 » Fri, 2019-01-25 00:45
1
2,354 by zhangying1990
Fri, 2019-02-01 00:44
Normal topic why two packing setting return different energy?
by zhangying1990 » Wed, 2019-01-30 00:18
2
2,682 by zhangying1990
Fri, 2019-02-01 00:30
Normal topic Changing the membrane Thickness (THKN)
by jlapin » Mon, 2018-11-12 06:32
1
2,053 by ralford
Wed, 2018-12-19 03:20

Pages

New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - PyRosetta - General