There is a unbind function:
def unbind(pose, partners): STEP_SIZE = 100 JUMP = 2 docking.setup_foldtree(pose, partners, Vector1([-1,-1,-1])) trans_mover = rigid.RigidBodyTransMover(pose,JUMP) trans_mover.step_size(STEP_SIZE) trans_mover.apply(pose)
The system is a three-chain complex, and partners is "HL_A", meaning separating chain H&L from chain A.
If I have a two-chain complex, e.g. partners is "L_R", what should be the value of JUMP?