The definition of the "MaxSub" is the maximum number of residues that fit "well", and according to the original paper, the default cutoff distance is 3.5A.
Q1: Does Rosetta use the same cut-off?
Q2: what about MaxSub2.0?
Q3: Why some web servers give me different "maxsub" form Rosetta's?
Thank you so much for your continuous support.