Hello,
My pyrosetta do not have rosetta/bin or pyrosetta/bin. So I can not run match.linuxgccrelease and so on. why?
Thanks for any help!
Hi all,
I'm currently trying to run the CCDLoopClosureMover function in order to attach two protein domains together.
When I try to add a single cutpoint variant around my jump point, I repeatedly get a warning that says:
"Residue 126 is not compatible with cutpoints; variant type not changed."
Residue 126 is the Cterminus
This warning also shows up for residue 127 (the Nterminus of the other protein domain). And thus, I cannot apply CCD to my pose because I don't have a cutpoint variant....
I have successfully installed PyRosetta via anaconda by command of "conda install pyrosetta" in Linux (Windows subsystem Linux) according to this instruction.
I have tried the latest version of Pyrosetta Anaconda python3.6 (PyRosetta4.Release.python36.mac 2019.19+release 5adc612fd9dee20f808a07e761610d95698b0f35) and previous version, PyRosetta4.Release.python36.mac 2019.18+release on MacOS, but run into the same errors when I do, for example,
I run into this problem when trying to use prepend_polymer_residue_before_seqpos and I can't understand what it really means and, most importantly, what its cause is and how to prevent it from happening. There's a screenshot of the error in the attached pic.
Assertion `moving_connection.icoor().is_internal() && fixed_connection.icoor().is_internal()` failed
I'm currently installing PyRosetta on windows (anaconda) using the linux tar file with the installation instructions from
I've reached step 6:
From within the new PyRosetta directory, type cd setup && python setup.py install into the command line to set up the PyRosetta.
I've run the installation and received the following output:
Hello, I am very new to PyRosetta, so this might not make a lot of sense. What I'm trying to do is minimise the energy of a given pose. I don't know much about this, so any tips about how to approach it and which instruments to use would be appreciated. Thank you.
Hello :
I am learning the basics of pyrosetta from this tutorial
https://graylab.jhu.edu/pyrosetta/downloads/documentation/PyRosetta_Manual.pdf
but when I enter the code verbatim I get an error.
is something wrong with the syntax they give? trying to do this:
Hello everyone,
I just installed and started playing around with PyRosetta, following the corresponding workshops in the web page, when I got the following error:
