The problem hasn't been solved
Hi, I am trying to replace the C-terminal segment of a designed protein with that taken from a crystral structure using the Remodel module with the DomainFusion flag turned on. I have tried several different tweaks to the arrangment however the gist of it is that I use the following command.
Hi guys,
I'm using a tutorial for analysis my results of abinitio, in the step for "identify the best socring models" using this script "~/rosetta_workshop/Rosetta/main/source/bin/combine_silent.default.linuxgccrelease -database ~/rosetta_workshop/Rosetta/main/database/ -in:file:silent 2LZM_0*.out -in:file:silent_struct_type binary -in:file:fullatom -out:output -out:file:silent 2LZM_all_models_silent.out -out:file:silent_struct_type binary -out:file:fullatom"
I has this error
Hello Rosetta forum!
I've been trying to run Rosetta (2015wk39) on an IBM Power8 machine. It has 64-bit PowerPC processors, which, according to our CS department, have been set up to work with little-endian byte ordering. Rosetta compiles fine* but I've been getting failures when running unit-tests.
I've attached the full log, and the epilogue is attached inline at the end of this message. Of all failed tests, I can only find details to the test_rotamer_trials test, which have the following error:
Can one break one large global low-resolution docking run into smaller runs using -run:constant_seed and -run:jran=######## and just assign different ####### seed to each run.
I'm interested in seeing how the energies output by RosettaDock relate to other docking software, so I want to try to take a set of dimer complex PDBs of which I know the score from the other software, and see what the scores would be if produced in RosettaDock.
Hello!
I tried to build MPI executables. And I copied main/source/tools/build/site.settings.topsail to main/source/tools/build/site.settings before that as it is noticed in the documentation.
But an error occured.
Hello,
I need to use mpi_refinement application (I have the most recent version of Rosetta), so I write
./scons.py -j8 bin/mpi_refinement.linuxgccrelease mode=release extras=mpi (from main/source), but the error occurs:
Hello.
I tried to run Unit test (python test/run.py), but it stopped with an error:
Hello,
Can someone explain or show me where to find information about the variables in the constraint function types? For example, in the harmonic function, what are the variables s and d? https://www.rosettacommons.org/docs/latest/rosetta_basics/file_types/constraint-file
Thanks!
Amanda
