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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 01:38
1
22,824 by Sergey
Fri, 2015-09-04 16:14
Normal topic Different results FastRelax pyrosetta vs rosetta_scripts
by karenjgonzalez » Tue, 2023-06-20 09:52
2
867 by karenjgonzalez
Fri, 2023-08-11 10:57
Normal topic GPU computing and PyRosetta
by oppopomoz » Thu, 2013-07-11 05:55
1
4,710 by rmoretti
Mon, 2014-04-21 06:48
Normal topic "corrupted" small molecules. aromatic rings get distortet during relax
by patcD » Thu, 2022-07-21 04:51
1
3,351 by rmoretti
Thu, 2022-07-21 07:14
Normal topic "No Python class registered..." when trying to access SymDofs
by pitmand » Tue, 2015-03-17 14:29
3
5,260 by Sergey
Fri, 2015-03-27 14:34
Normal topic "Server Could Not Be Reached" although I have an Internet connection
by epi89 » Mon, 2020-09-28 21:32
1
1,764 by smlewis
Tue, 2020-09-29 12:00
Normal topic "Server Could Not Be Reached" although I have an Internet connection
by aushawxian » Sun, 2018-01-28 20:21
1
2,111 by walcob
Mon, 2018-01-29 11:22
Normal topic (1) Score pose, (2) move atom, (3) score pose
by msellers » Fri, 2011-07-15 11:04
6
6,412 by msellers
Mon, 2014-04-21 06:47
Normal topic 403 on documentation for PyRosetta
by matteoferla » Mon, 2022-06-06 12:19
1
2,641 by rmoretti
Mon, 2022-06-06 12:35
Normal topic About missing disulfide partners for residue...
by Mon » Wed, 2014-12-17 05:37
3
6,059 by jadolfbr
Thu, 2014-12-18 09:37
Normal topic Acessing energies terms from energy.show() table
by João Sartori » Mon, 2022-02-07 07:56
2
1,584 by João Sartori
Wed, 2022-02-09 04:35
Normal topic add missing residues into rna
by galvaner » Tue, 2015-09-15 16:41
3
4,761 by galvaner
Mon, 2015-09-21 13:37
Normal topic Add new atom
by eberhardt » Thu, 2013-03-14 02:01
4
7,271 by eberhardt
Mon, 2014-04-21 06:47
Normal topic Adding a residue type to a residue type set
by matteoferla » Wed, 2020-07-08 08:14
2
3,008 by matteoferla
Fri, 2020-07-10 02:20
Normal topic adding coordinate constraints
by jtmacd » Tue, 2011-04-12 04:51
11
12,503 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Adding Custom AtomTypes to Pyrosetta
by garrettameek » Wed, 2019-03-13 15:06
1
1,970 by rmoretti
Thu, 2019-05-09 15:06
Normal topic Adding energies of residues doesnt add up to energy of the entire protein
by astrofunk » Tue, 2010-09-14 11:24
1
3,241 by smlewis
Mon, 2014-04-21 06:47
Normal topic adding nucleotides to a dna model
by jadolfbr » Wed, 2012-12-05 11:40
3
4,848 by smlewis
Mon, 2014-04-21 06:47
Normal topic Affinity optimization with GreedyOptMutationMover
by wentlewi » Thu, 2020-05-07 08:29
0
1,216 by wentlewi
Thu, 2020-05-07 12:33
Normal topic Alignment and RMSD
by ñ » Wed, 2013-11-27 12:43
5
10,926 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Allowing cysteines to repack
by eyliaw » Thu, 2012-07-05 14:46
3
4,356 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Altering Score/EMapVector
by mmertens » Fri, 2012-01-27 09:33
5
5,312 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Alternative to MinMover
by MNP1986 » Tue, 2018-07-31 02:18
2
3,311 by MNP1986
Tue, 2018-07-31 23:50
Normal topic Alternatives to DockMCMProtocol
by swirt » Thu, 2021-01-28 17:37
4
3,086 by swirt
Thu, 2021-02-25 21:54
Normal topic Amino acid modifications: retinal linked to lysine
by tsikosek » Tue, 2014-01-21 12:52
1
3,297 by rmoretti
Mon, 2014-04-21 06:48
Normal topic An issue with GenericMonteCarloMover()
by ac.research » Wed, 2018-03-07 13:57
13
9,852 by ac.research
Fri, 2018-05-11 10:59
Normal topic analysis utilities for trajectories
by cbala » Mon, 2010-06-14 02:58
0
1,827 by cbala
Mon, 2014-04-21 06:47
Normal topic Announcements
by sid » Fri, 2009-10-02 08:54
0
1,737 by sid
Mon, 2014-04-21 06:47
Normal topic any examples of calling SnugDock from pyrosetta?
by antonkulaga » Thu, 2021-12-23 16:13
1
1,293 by matteoferla
Mon, 2022-01-10 07:14
Normal topic Applying RMSD constraints using pyrosetta or Rosettascripts
by chenna » Thu, 2023-02-09 05:37
2
1,837 by chenna
Fri, 2023-02-10 05:37
Normal topic Approximating CHARMM energy by the rosetta scoring function
by ajasja » Fri, 2014-06-20 02:16
4
6,016 by ajasja
Thu, 2014-07-03 05:53
Normal topic Architecture question
by jwillis » Thu, 2010-02-25 09:43
0
1,882 by jwillis
Mon, 2014-04-21 06:47
Normal topic Are there any plans to make PyRosetta directly functional on 64-bit architecture?
by AndrewBworth » Fri, 2009-12-18 10:09
2
2,968 by sid
Mon, 2014-04-21 06:47
Normal topic Argument error when running D120_Ligand_interface.py
by piladam » Wed, 2014-07-09 10:43
5
7,377 by rmoretti
Mon, 2014-07-21 11:15
Normal topic Assesing the docking
by nasim.soltani58 » Sat, 2020-12-05 21:19
2
2,021 by nasim.soltani58
Tue, 2020-12-08 22:44
Normal topic Atom mapping in RMSD functions
by gkell » Tue, 2022-02-15 15:48
1
1,300 by rmoretti
Fri, 2022-02-18 10:23
Normal topic Atom-wise energy terms from nearest N-neighbors
by jasiozaucha » Thu, 2021-03-25 14:49
3
2,553 by matteoferla
Fri, 2021-05-28 02:41
Normal topic Backbone didn't change in docking, why?
by SunH » Wed, 2010-06-02 10:07
6
6,551 by SunH
Mon, 2014-04-21 06:47
Normal topic backrub mover
by sunlufinal » Sat, 2012-11-24 04:46
8
11,739 by jadolfbr
Tue, 2015-08-18 00:53
Normal topic BackrubMover options
by AOK » Thu, 2012-05-24 05:06
5
5,669 by AOK
Mon, 2014-04-21 06:47
Normal topic Best Way to Append/Insert Residue
by jaulicino » Tue, 2020-07-21 10:24
3
4,051 by matteoferla
Sat, 2020-07-25 03:52
Normal topic Best way to store a pose by Pyrosetta for Pyrosetta
by matteoferla » Wed, 2021-04-07 06:50
0
2,263 by matteoferla
Wed, 2021-04-07 06:50
Normal topic Beta-Hairpin Design
by bharat_46010 » Wed, 2014-02-12 23:18
2
4,121 by bharat_46010
Thu, 2014-02-13 16:00
Normal topic BluePrintBDRMover set_atom_type error
by ac.research » Sat, 2017-12-09 02:16
3
3,425 by rmoretti
Sat, 2017-12-16 14:06
Normal topic Boost.Python C++/PyRosetta interop
by gipsonb » Wed, 2010-10-06 15:15
1
2,803 by gipsonb
Mon, 2014-04-21 06:47
Normal topic building a 77 amino acid long fragment
by tevang » Fri, 2010-02-19 06:37
0
1,750 by tevang
Mon, 2014-04-21 06:47
Normal topic Calculate residue-residue pairwise energies
by pachecoj » Tue, 2013-07-23 04:51
4
6,922 by Sergey
Mon, 2014-04-21 06:48
Normal topic Calculate TM-score
by nasim.soltani58 » Fri, 2021-03-26 16:50
1
2,793 by rmoretti
Mon, 2021-03-29 06:53
Normal topic Calculating sasa per atom and atomid_map
by ioannis.f » Wed, 2014-08-13 05:26
1
2,770 by Sergey
Thu, 2014-08-14 11:54
Normal topic Calling SnugDock from PyRosetta
by shruthi.murali » Wed, 2020-07-29 15:10
4
3,516 by antonkulaga
Thu, 2021-12-23 16:07
Normal topic Can I export command line & result from iPython PyRosetta shell to a text file?
by lanselibai » Mon, 2014-08-25 04:05
2
3,881 by lanselibai
Tue, 2014-08-26 01:49
Normal topic Can we have email alert for the reply?
by lanselibai » Wed, 2014-08-13 13:24
0
1,833 by lanselibai
Wed, 2014-08-13 13:24
Normal topic Cannot get PyMOL_mover to work on MacOS
by cno » Fri, 2012-02-10 07:24
2
4,535 by cno
Mon, 2014-04-21 06:47
Normal topic Cannot get PyMOL_Observer to work on MacOS
by cno » Thu, 2012-02-16 09:15
1
2,499 by Sergey
Mon, 2014-04-21 06:47
Normal topic Capturing the output of scorefxn.show(pose)
by ajasja » Fri, 2014-06-20 05:30
2
4,084 by ajasja
Sat, 2014-06-21 11:57
Normal topic cartesian delta delta G
by patcD » Wed, 2021-02-10 01:46
4
4,334 by arjan-hada
Sat, 2024-01-27 05:45
Normal topic cartesian space minimization
by bystrc » Fri, 2014-03-28 14:17
10
15,456 by rmoretti
Thu, 2016-02-18 14:22
Normal topic Challenge with applying AntibodyCDRGrafter method and MinMover method
by kylevaccaro » Sat, 2023-02-18 21:41
1
1,520 by nannemdp
Sun, 2023-02-19 12:05
Normal topic change dihedral angles of any residue
by bharat_46010 » Fri, 2013-11-15 00:30
3
5,492 by bharat_46010
Mon, 2014-04-21 06:48
Normal topic Changing the membrane Thickness (THKN)
by jlapin » Mon, 2018-11-12 06:32
1
2,096 by ralford
Wed, 2018-12-19 03:20
Normal topic Charmm, hydroxyproline, hydrogen atom ID
by rfschleif » Tue, 2011-07-12 11:26
1
3,718 by rfschleif
Mon, 2014-04-21 06:47
Normal topic Classic Relax
by iGemBoulder » Fri, 2019-06-28 09:24
2
2,801 by sheehajh
Wed, 2019-07-17 12:43
Normal topic ClassicRelax with ligand
by S » Mon, 2010-09-27 07:55
1
2,298 by smlewis
Mon, 2014-04-21 06:47
Normal topic ClassicRelax: how to block the backbone
by oppopomoz » Fri, 2015-11-27 08:17
3
4,400 by rmoretti
Tue, 2015-12-01 15:18
Normal topic cleanATOM() for non-ideal amino acids
by ac.research » Thu, 2018-03-29 07:50
0
1,461 by ac.research
Thu, 2018-03-29 07:50
Normal topic Collect data about the modelling
by Roberto » Thu, 2022-01-06 01:43
0
783 by Roberto
Thu, 2022-01-06 01:43
Normal topic Compile C++ Rosetta to Pyrosetta
by michelleqyh » Fri, 2020-08-21 08:44
0
1,152 by michelleqyh
Fri, 2020-08-21 08:44
Normal topic Complex DNA Protein docking
by kim-nguyen » Wed, 2015-07-22 13:49
2
4,213 by kim-nguyen
Fri, 2015-07-24 23:04
Normal topic Concatenate Pose
by jadolfbr » Sat, 2011-02-19 21:12
8
9,555 by smlewis
Mon, 2014-04-21 06:47
Normal topic Constraint files, section formatted
by srballard » Fri, 2010-11-05 11:55
2
3,040 by drluca77
Mon, 2014-04-21 06:47
Normal topic Convert Rotamer Vector to Chi Angles
by L-Allanine » Sat, 2016-07-30 09:16
1
2,303 by rmoretti
Mon, 2016-09-05 10:35
Normal topic Coordinates in pose do not match those in PDB
by ajasja » Tue, 2014-10-28 12:29
2
3,676 by ajasja
Thu, 2014-10-30 08:32
Normal topic Create PDB for heterodimer
by pachecoj » Mon, 2013-08-05 19:11
1
5,906 by rmoretti
Mon, 2014-04-21 06:48
Hot topic Creating a vector1 of AtomID objects
by msellers » Mon, 2011-07-18 06:24
19
18,056 by msellers
Mon, 2014-04-21 06:47
Normal topic Creating FeatureReporters in PyRosetta
by LiorZ » Tue, 2016-08-23 23:50
7
6,729 by smlewis
Wed, 2016-08-24 14:23
Normal topic Creating rotamers, computing pairwise and total energies
by gerdos » Wed, 2017-04-12 02:57
6
6,114 by gerdos
Tue, 2017-04-18 10:15
Normal topic Custom Constraints
by jinli711 » Wed, 2020-07-15 15:22
2
2,478 by matteoferla
Fri, 2020-10-09 05:20
Normal topic Customize Rosetta codes and make it accessible to PyRosetta
by xfliu » Thu, 2012-05-24 06:27
7
6,742 by Sergey
Mon, 2014-04-21 06:47
Normal topic Cutout part of a protein
by ac.research » Wed, 2017-05-31 11:55
2
2,925 by jadolfbr
Sat, 2017-06-03 19:20
Normal topic D070_Refinement.py
by thorx020 » Fri, 2012-09-14 06:40
1
2,622 by smlewis
Mon, 2014-04-21 06:47
Normal topic De novo loop modeling using pyrosetta
by bharat_46010 » Sun, 2011-01-16 17:38
4
5,965 by Sergey
Mon, 2014-04-21 06:47
Normal topic Decoy Clustering
by jadolfbr » Mon, 2010-02-01 22:50
5
6,090 by nawsad
Mon, 2014-04-21 06:47
Normal topic Define custom potential?
by rfschleif » Fri, 2011-05-06 11:25
2
3,909 by weitzner
Mon, 2014-04-21 06:47
Normal topic Deleting residue one produces a segmentation fault
by rfschleif » Thu, 2011-06-16 07:02
1
2,485 by smlewis
Mon, 2014-04-21 06:47
Normal topic Deprotonated LYS
by Arik » Wed, 2011-06-22 16:34
3
4,987 by smlewis
Mon, 2014-04-21 06:47
Normal topic Designating Fold Tree Edges as Flexible or Rigid
by nleroy » Tue, 2019-07-23 11:34
3
3,148 by smlewis
Tue, 2019-07-23 13:27
Normal topic Determine residues where Backrub Mover is applied
by jferrie » Fri, 2017-10-27 08:19
1
1,865 by rmoretti
Fri, 2017-12-01 10:25
Normal topic dG(partner) and ddG(bind)
by levinthal » Sat, 2010-08-21 17:04
2
5,693 by smlewis
Mon, 2014-04-21 06:47
Normal topic Difference between GenericMonteCarloMover() and GenericSimulatedAnnealer()
by ac.research » Fri, 2018-05-11 10:37
4
4,436 by ac.research
Fri, 2018-05-11 15:46
Normal topic Different types of MinMover
by nasim.soltani58 » Sun, 2020-12-20 11:44
2
2,058 by nasim.soltani58
Tue, 2020-12-22 13:37
Normal topic Displaying side-chain rotamers in PyMol
by ajasja » Wed, 2014-09-24 08:57
0
2,999 by ajasja
Wed, 2014-09-24 08:57
Normal topic Distance constraints for amino acids pairs
by blubbi » Tue, 2010-05-18 05:39
0
1,891 by blubbi
Mon, 2014-04-21 06:47
Normal topic Disuplhide bonds
by batch2k » Tue, 2009-12-15 09:57
3
5,103 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Dock antibody at the epitope of antigen
by styang » Fri, 2012-06-22 05:44
3
5,645 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking between peptide and lipid-biayer
by sprinkle166 » Thu, 2017-10-26 08:35
1
2,054 by rmoretti
Fri, 2017-12-01 10:34
Normal topic DockingHighResLegacy repacks all sidechains on first apply(), interface sidechains on subsequent apply()
by msellers » Wed, 2012-02-22 22:46
4
5,747 by rmoretti
Thu, 2019-05-09 15:03
Normal topic DockingSlideIntoContact does not work
by batch2k » Wed, 2010-02-17 05:57
0
1,717 by batch2k
Mon, 2014-04-21 06:47
Normal topic Documentation of ``mysterious'' protocols
by ñ » Wed, 2013-10-30 08:19
3
4,414 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Does Rosetta scoring function can distinguish good structure from bad one?
by Victor » Sun, 2013-06-16 21:11
4
4,840 by Victor
Mon, 2014-04-21 06:48
Normal topic Dose it support Fixed Backbone Ddg Prediction?
by ppprotein » Fri, 2010-01-29 00:54
1
2,420 by sid
Mon, 2014-04-21 06:47

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