You are here

PyRosetta - General

Pages

Topic / Topic startersort descending Replies Views Last post
Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 01:38
1
18,717 by Sergey
Fri, 2015-09-04 16:14
Normal topic GPU computing and PyRosetta
by oppopomoz » Thu, 2013-07-11 05:55
1
3,146 by rmoretti
Mon, 2014-04-21 06:48
Normal topic "No Python class registered..." when trying to access SymDofs
by pitmand » Tue, 2015-03-17 14:29
3
3,280 by Sergey
Fri, 2015-03-27 14:34
Normal topic "Server Could Not Be Reached" although I have an Internet connection
by epi89 » Mon, 2020-09-28 21:32
1
94 by smlewis
Tue, 2020-09-29 12:00
Normal topic "Server Could Not Be Reached" although I have an Internet connection
by aushawxian » Sun, 2018-01-28 20:21
1
822 by walcob
Mon, 2018-01-29 11:22
Normal topic (1) Score pose, (2) move atom, (3) score pose
by msellers » Fri, 2011-07-15 11:04
6
3,683 by msellers
Mon, 2014-04-21 06:47
Normal topic About missing disulfide partners for residue...
by Mon » Wed, 2014-12-17 05:37
3
3,583 by jadolfbr
Thu, 2014-12-18 09:37
Normal topic add missing residues into rna
by galvaner » Tue, 2015-09-15 16:41
3
2,574 by galvaner
Mon, 2015-09-21 13:37
Normal topic Add new atom
by eberhardt » Thu, 2013-03-14 02:01
4
4,784 by eberhardt
Mon, 2014-04-21 06:47
Normal topic Adding a residue type to a residue type set
by matteoferla » Wed, 2020-07-08 08:14
2
264 by matteoferla
Fri, 2020-07-10 02:20
Normal topic adding coordinate constraints
by jtmacd » Tue, 2011-04-12 04:51
11
7,212 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Adding Custom AtomTypes to Pyrosetta
by garrettameek » Wed, 2019-03-13 15:06
1
530 by rmoretti
Thu, 2019-05-09 15:06
Normal topic Adding energies of residues doesnt add up to energy of the entire protein
by astrofunk » Tue, 2010-09-14 11:24
1
1,978 by smlewis
Mon, 2014-04-21 06:47
Normal topic adding nucleotides to a dna model
by jadolfbr » Wed, 2012-12-05 11:40
3
2,886 by smlewis
Mon, 2014-04-21 06:47
Normal topic Affinity optimization with GreedyOptMutationMover
by wentlewi » Thu, 2020-05-07 08:29
0
194 by wentlewi
Thu, 2020-05-07 12:33
Normal topic Alignment and RMSD
by ñ » Wed, 2013-11-27 12:43
5
6,688 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Allowing cysteines to repack
by eyliaw » Thu, 2012-07-05 14:46
3
2,487 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Altering Score/EMapVector
by mmertens » Fri, 2012-01-27 09:33
5
3,022 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Alternative to MinMover
by MNP1986 » Tue, 2018-07-31 02:18
2
1,104 by MNP1986
Tue, 2018-07-31 23:50
Normal topic Amino acid modifications: retinal linked to lysine
by tsikosek » Tue, 2014-01-21 12:52
1
2,118 by rmoretti
Mon, 2014-04-21 06:48
Normal topic An issue with GenericMonteCarloMover()
by ac.research » Wed, 2018-03-07 13:57
13
3,433 by ac.research
Fri, 2018-05-11 10:59
Normal topic analysis utilities for trajectories
by cbala » Mon, 2010-06-14 02:58
0
1,161 by cbala
Mon, 2014-04-21 06:47
Normal topic Announcements
by sid » Fri, 2009-10-02 08:54
0
1,048 by sid
Mon, 2014-04-21 06:47
Normal topic Approximating CHARMM energy by the rosetta scoring function
by ajasja » Fri, 2014-06-20 02:16
4
3,654 by ajasja
Thu, 2014-07-03 05:53
Normal topic Architecture question
by jwillis » Thu, 2010-02-25 09:43
0
1,218 by jwillis
Mon, 2014-04-21 06:47
Normal topic Are there any plans to make PyRosetta directly functional on 64-bit architecture?
by AndrewBworth » Fri, 2009-12-18 10:09
2
1,595 by sid
Mon, 2014-04-21 06:47
Normal topic Argument error when running D120_Ligand_interface.py
by piladam » Wed, 2014-07-09 10:43
5
4,907 by rmoretti
Mon, 2014-07-21 11:15
Normal topic Backbone didn't change in docking, why?
by SunH » Wed, 2010-06-02 10:07
6
3,637 by SunH
Mon, 2014-04-21 06:47
Normal topic backrub mover
by sunlufinal » Sat, 2012-11-24 04:46
8
7,741 by jadolfbr
Tue, 2015-08-18 00:53
Normal topic BackrubMover options
by AOK » Thu, 2012-05-24 05:06
5
3,083 by AOK
Mon, 2014-04-21 06:47
Normal topic Best Way to Append/Insert Residue
by jaulicino » Tue, 2020-07-21 10:24
3
318 by matteoferla
Sat, 2020-07-25 03:52
Normal topic Beta-Hairpin Design
by bharat_46010 » Wed, 2014-02-12 23:18
2
2,457 by bharat_46010
Thu, 2014-02-13 16:00
Normal topic BluePrintBDRMover set_atom_type error
by ac.research » Sat, 2017-12-09 02:16
3
1,445 by rmoretti
Sat, 2017-12-16 14:06
Normal topic Boost.Python C++/PyRosetta interop
by gipsonb » Wed, 2010-10-06 15:15
1
1,779 by gipsonb
Mon, 2014-04-21 06:47
Normal topic building a 77 amino acid long fragment
by tevang » Fri, 2010-02-19 06:37
0
1,060 by tevang
Mon, 2014-04-21 06:47
Normal topic Calculate residue-residue pairwise energies
by pachecoj » Tue, 2013-07-23 04:51
4
4,604 by Sergey
Mon, 2014-04-21 06:48
Normal topic Calculating sasa per atom and atomid_map
by ioannis.f » Wed, 2014-08-13 05:26
1
1,649 by Sergey
Thu, 2014-08-14 11:54
Normal topic Calling SnugDock from PyRosetta
by shruthi.murali » Wed, 2020-07-29 15:10
3
265 by matteoferla
Fri, 2020-08-07 03:29
Normal topic Can I export command line & result from iPython PyRosetta shell to a text file?
by lanselibai » Mon, 2014-08-25 04:05
2
2,287 by lanselibai
Tue, 2014-08-26 01:49
Normal topic Can we have email alert for the reply?
by lanselibai » Wed, 2014-08-13 13:24
0
1,201 by lanselibai
Wed, 2014-08-13 13:24
Normal topic Cannot get PyMOL_mover to work on MacOS
by cno » Fri, 2012-02-10 07:24
2
2,968 by cno
Mon, 2014-04-21 06:47
Normal topic Cannot get PyMOL_Observer to work on MacOS
by cno » Thu, 2012-02-16 09:15
1
1,487 by Sergey
Mon, 2014-04-21 06:47
Normal topic Capturing the output of scorefxn.show(pose)
by ajasja » Fri, 2014-06-20 05:30
2
2,538 by ajasja
Sat, 2014-06-21 11:57
Normal topic cartesian space minimization
by bystrc » Fri, 2014-03-28 14:17
10
9,752 by rmoretti
Thu, 2016-02-18 14:22
Normal topic change dihedral angles of any residue
by bharat_46010 » Fri, 2013-11-15 00:30
3
3,299 by bharat_46010
Mon, 2014-04-21 06:48
Normal topic Changing the membrane Thickness (THKN)
by jlapin » Mon, 2018-11-12 06:32
1
650 by ralford
Wed, 2018-12-19 03:20
Normal topic Charmm, hydroxyproline, hydrogen atom ID
by rfschleif » Tue, 2011-07-12 11:26
1
2,452 by rfschleif
Mon, 2014-04-21 06:47
Normal topic Classic Relax
by iGemBoulder » Fri, 2019-06-28 09:24
2
618 by sheehajh
Wed, 2019-07-17 12:43
Normal topic ClassicRelax with ligand
by S » Mon, 2010-09-27 07:55
1
1,350 by smlewis
Mon, 2014-04-21 06:47
Normal topic ClassicRelax: how to block the backbone
by oppopomoz » Fri, 2015-11-27 08:17
3
2,567 by rmoretti
Tue, 2015-12-01 15:18
Normal topic cleanATOM() for non-ideal amino acids
by ac.research » Thu, 2018-03-29 07:50
0
615 by ac.research
Thu, 2018-03-29 07:50
Normal topic Compile C++ Rosetta to Pyrosetta
by michelleqyh » Fri, 2020-08-21 08:44
0
83 by michelleqyh
Fri, 2020-08-21 08:44
Normal topic Complex DNA Protein docking
by kim-nguyen » Wed, 2015-07-22 13:49
2
2,614 by kim-nguyen
Fri, 2015-07-24 23:04
Normal topic Concatenate Pose
by jadolfbr » Sat, 2011-02-19 21:12
8
5,685 by smlewis
Mon, 2014-04-21 06:47
Normal topic Constraint files, section formatted
by srballard » Fri, 2010-11-05 11:55
2
1,725 by drluca77
Mon, 2014-04-21 06:47
Normal topic Convert Rotamer Vector to Chi Angles
by L-Allanine » Sat, 2016-07-30 09:16
1
1,183 by rmoretti
Mon, 2016-09-05 10:35
Normal topic Coordinates in pose do not match those in PDB
by ajasja » Tue, 2014-10-28 12:29
2
2,076 by ajasja
Thu, 2014-10-30 08:32
Normal topic Create PDB for heterodimer
by pachecoj » Mon, 2013-08-05 19:11
1
4,554 by rmoretti
Mon, 2014-04-21 06:48
Hot topic Creating a vector1 of AtomID objects
by msellers » Mon, 2011-07-18 06:24
19
9,617 by msellers
Mon, 2014-04-21 06:47
Normal topic Creating FeatureReporters in PyRosetta
by LiorZ » Tue, 2016-08-23 23:50
7
3,572 by smlewis
Wed, 2016-08-24 14:23
Normal topic Creating rotamers, computing pairwise and total energies
by gerdos » Wed, 2017-04-12 02:57
6
2,774 by gerdos
Tue, 2017-04-18 10:15
Normal topic Custom Constraints
by jinli711 » Wed, 2020-07-15 15:22
2
205 by matteoferla
Fri, 2020-10-09 05:20
Normal topic Customize Rosetta codes and make it accessible to PyRosetta
by xfliu » Thu, 2012-05-24 06:27
7
3,667 by Sergey
Mon, 2014-04-21 06:47
Normal topic Cutout part of a protein
by ac.research » Wed, 2017-05-31 11:55
2
1,312 by jadolfbr
Sat, 2017-06-03 19:20
Normal topic D070_Refinement.py
by thorx020 » Fri, 2012-09-14 06:40
1
1,596 by smlewis
Mon, 2014-04-21 06:47
Normal topic De novo loop modeling using pyrosetta
by bharat_46010 » Sun, 2011-01-16 17:38
4
3,547 by Sergey
Mon, 2014-04-21 06:47
Normal topic Decoy Clustering
by jadolfbr » Mon, 2010-02-01 22:50
5
3,574 by nawsad
Mon, 2014-04-21 06:47
Normal topic Define custom potential?
by rfschleif » Fri, 2011-05-06 11:25
2
2,468 by weitzner
Mon, 2014-04-21 06:47
Normal topic Deleting residue one produces a segmentation fault
by rfschleif » Thu, 2011-06-16 07:02
1
1,535 by smlewis
Mon, 2014-04-21 06:47
Normal topic Deprotonated LYS
by Arik » Wed, 2011-06-22 16:34
3
2,736 by smlewis
Mon, 2014-04-21 06:47
Normal topic Designating Fold Tree Edges as Flexible or Rigid
by nleroy » Tue, 2019-07-23 11:34
3
654 by smlewis
Tue, 2019-07-23 13:27
Normal topic Determine residues where Backrub Mover is applied
by jferrie » Fri, 2017-10-27 08:19
1
768 by rmoretti
Fri, 2017-12-01 10:25
Normal topic dG(partner) and ddG(bind)
by levinthal » Sat, 2010-08-21 17:04
2
3,880 by smlewis
Mon, 2014-04-21 06:47
Normal topic Difference between GenericMonteCarloMover() and GenericSimulatedAnnealer()
by ac.research » Fri, 2018-05-11 10:37
4
1,546 by ac.research
Fri, 2018-05-11 15:46
Normal topic Displaying side-chain rotamers in PyMol
by ajasja » Wed, 2014-09-24 08:57
0
1,835 by ajasja
Wed, 2014-09-24 08:57
Normal topic Distance constraints for amino acids pairs
by blubbi » Tue, 2010-05-18 05:39
0
1,198 by blubbi
Mon, 2014-04-21 06:47
Normal topic Disuplhide bonds
by batch2k » Tue, 2009-12-15 09:57
3
3,051 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Dock antibody at the epitope of antigen
by styang » Fri, 2012-06-22 05:44
3
3,941 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking between peptide and lipid-biayer
by sprinkle166 » Thu, 2017-10-26 08:35
1
865 by rmoretti
Fri, 2017-12-01 10:34
Normal topic DockingHighResLegacy repacks all sidechains on first apply(), interface sidechains on subsequent apply()
by msellers » Wed, 2012-02-22 22:46
4
2,678 by rmoretti
Thu, 2019-05-09 15:03
Normal topic DockingSlideIntoContact does not work
by batch2k » Wed, 2010-02-17 05:57
0
1,060 by batch2k
Mon, 2014-04-21 06:47
Normal topic Documentation of ``mysterious'' protocols
by ñ » Wed, 2013-10-30 08:19
3
2,644 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Does Rosetta scoring function can distinguish good structure from bad one?
by Victor » Sun, 2013-06-16 21:11
4
2,839 by Victor
Mon, 2014-04-21 06:48
Normal topic Dose it support Fixed Backbone Ddg Prediction?
by ppprotein » Fri, 2010-01-29 00:54
1
1,354 by sid
Mon, 2014-04-21 06:47
Normal topic dump_pdb problems
by srballard » Fri, 2010-05-28 14:04
0
1,470 by srballard
Mon, 2014-04-21 06:47
Normal topic Dunbrack Library
by jadolfbr » Tue, 2011-05-10 13:59
3
2,594 by weitzner
Mon, 2014-04-21 06:47
Hot topic Energy Minimization
by bharat_46010 » Wed, 2013-07-31 20:45
24
20,235 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Energy of individual loop/region
by jadolfbr » Mon, 2012-04-02 13:15
3
2,005 by smlewis
Mon, 2014-04-21 06:47
Normal topic Energy scores of D-amino acids
by jshen2 » Mon, 2017-05-08 10:15
7
2,858 by jshen2
Sat, 2017-05-13 08:14
Normal topic EnergyMethodCreator error when writing custom energy method
by furybubu » Mon, 2017-12-11 15:46
2
1,059 by furybubu
Tue, 2017-12-12 10:04
Normal topic Enumerating torsion (dihedral) angles
by ajasja » Wed, 2014-10-01 09:10
2
2,743 by rmoretti
Mon, 2014-10-06 15:10
Normal topic Error getting MinMover attributes
by assaff » Sun, 2012-03-25 10:54
6
3,437 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error in core/scoring/methods/VDW_Energy.cc line: 169
by pepfolder » Thu, 2012-05-31 11:13
2
2,829 by pepfolder
Mon, 2014-04-21 06:47
Normal topic Error in loop modeling protocol
by jai_INMAS » Fri, 2013-10-18 07:08
5
3,832 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Error in loop modeling protocol its showing error "NameError: name 'ccd_closure' is not defined"
by jai_INMAS » Sun, 2013-10-20 05:22
1
1,588 by Labonte
Mon, 2014-09-08 09:13
Normal topic Error when importing protocols.simple_filters
by xfliu » Tue, 2012-10-16 13:37
8
4,417 by xfliu
Mon, 2014-04-21 06:47
Normal topic Error when trying to import 'get_secstruct'
by quantumnumber » Thu, 2019-04-11 03:50
4
1,635 by quantumnumber
Fri, 2019-05-10 02:25
Normal topic Error when using "generate_resfile_from_pose" function
by zhangying1990 » Fri, 2019-01-25 00:45
1
845 by zhangying1990
Fri, 2019-02-01 00:44
Normal topic Error while converting mol2 to params using molfile_to_params.py
by ahmadkhalifa » Thu, 2018-06-14 10:30
7
2,564 by rmoretti
Thu, 2018-06-28 12:04
Normal topic Error with etable_atom_pair_energies()
by yijietseng » Mon, 2019-01-28 14:00
2
1,043 by yijietseng
Tue, 2019-05-07 11:02

Pages

New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - PyRosetta - General