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Rosetta 3 - Applications

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Normal topic Flexible docking using rosetta density-fitting for DNA
by helm » Thu, 2012-06-14 23:43 		1
 2,835 by smlewis
Mon, 2014-04-21 06:47
Normal topic null mutation with ddg_monomer
by fred » Fri, 2012-05-11 07:16 		4
 4,266 by fred
Mon, 2014-04-21 06:47
Normal topic Holes output interpretation
by lah435 » Mon, 2012-06-04 15:02 		1
 2,523 by smlewis
Mon, 2014-04-21 06:47
Normal topic analysis of clustering
by loris.moretti » Thu, 2012-04-19 02:52 		3
 7,154 by rmoretti
Mon, 2014-04-21 06:47
Normal topic error with fragment_picker.linuxgccrelease
by jiongzhang » Tue, 2012-04-17 09:07 		3
 3,622 by smlewis
Mon, 2014-04-21 06:47
Normal topic Single Strand DNA (ssDNA) 3D structure prediction
by mkoohim » Fri, 2012-04-06 00:52 		4
 14,685 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains
by ahonegger » Tue, 2012-04-24 01:34 		3
 4,239 by ahonegger
Mon, 2014-04-21 06:47
Normal topic ddg_monomer problem
by deltag » Wed, 2012-04-04 07:53 		11
 12,573 by smlewis
Mon, 2014-04-21 06:47
Normal topic Surface accessible residue as a constraint.
by arthuc01 » Fri, 2012-03-09 23:27 		1
 2,336 by smlewis
Mon, 2014-04-21 06:47
Normal topic fragment_picker bug
by David Hoover » Wed, 2012-02-29 11:43 		0
 1,799 by David Hoover
Mon, 2014-04-21 06:47
Normal topic Symmetry Docking and Clustering with Ligands
by skovacs » Wed, 2012-03-07 16:46 		9
 11,844 by Anonymous
Mon, 2014-04-21 06:47
Normal topic how to run my openmp programe in rosetta3.3?
by lihowe » Mon, 2012-02-27 23:43 		1
 2,443 by smlewis
Mon, 2014-04-21 06:47
Normal topic Residue_energy_breakdown utility
by cn » Sat, 2012-03-17 06:11 		3
 3,668 by cn
Mon, 2014-04-21 06:47
Hot topic FloppyTail bugs for N-terminal tails
by Dave C » Thu, 2012-03-01 13:06 		18
 16,144 by bbarryabc
Mon, 2014-04-21 06:47
Normal topic docking in rosetta 3.3
by Ammu » Thu, 2012-03-15 12:03 		6
 6,164 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddG Monomer Low Res Protocol Convergence
by harshkhare » Thu, 2012-03-01 00:45 		2
 3,869 by harshkhare
Mon, 2014-04-21 06:47
Normal topic ab initio protein prediction using homologs
by justin » Mon, 2012-02-13 07:52 		5
 5,860 by justin
Mon, 2014-04-21 06:47
Normal topic parameterizing new residues
by chiendarret » Fri, 2012-02-03 22:59 		3
 7,780 by rmoretti
Mon, 2014-04-21 06:47
Normal topic pair energies across interface
by irini » Fri, 2012-02-10 09:17 		5
 5,090 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Generate fragment locally
by deltag » Wed, 2012-02-01 06:26 		2
 3,527 by deltag
Mon, 2014-04-21 06:47
Normal topic Difference between relax and mimimize_with_cst
by basvandenberg » Thu, 2012-02-09 00:16 		1
 2,910 by rmoretti
Mon, 2014-04-21 06:47
Normal topic loopmodel issue
by chiendarret » Fri, 2012-01-27 00:51 		1
 3,175 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does linker modeling exist?
by aroop » Wed, 2012-02-22 07:34 		5
 5,412 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax a structure with >1 copy of a modified residue fails [Solved]
by franfdez » Wed, 2012-02-08 00:47 		6
 6,552 by franfdez
Mon, 2014-04-21 06:47
Normal topic Runnig Abinitio & score app
by Gaurav_kumar » Wed, 2011-11-23 20:45 		9
 11,823 by rmoretti
Mon, 2014-04-21 06:47
Hot topic Run AbinitioRelax (rosetta 3.3) on cluster
by grisha » Mon, 2011-12-12 14:20 		18
 18,025 by grisha
Mon, 2014-04-21 06:47
Normal topic loop modeling during enzyme design?
by lzx32 » Wed, 2011-11-16 00:30 		6
 6,121 by lzx32
Mon, 2014-04-21 06:47
Normal topic problems in InterfaceAnalyzer analysis
by chenchaozhao » Fri, 2011-12-02 23:36 		9
 8,843 by smlewis
Mon, 2014-04-21 06:47
Normal topic How do you use two patches simulataneously with ab initio folding?
by smiruthi » Wed, 2011-12-21 15:24 		5
 5,477 by wangyr
Mon, 2014-04-21 06:47
Normal topic Don't know how to extract scores from a RNA de novo silent file.
by Basantab » Wed, 2011-11-23 17:27 		10
 10,159 by smlewis
Mon, 2014-04-21 06:47
Normal topic RMS determination using Rosetta 3.3
by adraney » Thu, 2011-12-08 12:44 		2
 3,380 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic Representing Cross-linked nitrogens
by jjlee2 » Sat, 2011-11-26 18:42 		1
 2,508 by smlewis
Mon, 2014-04-21 06:47
Hot topic Garbled Ligands from docking_protocol
by skovacs » Tue, 2011-12-20 07:55 		21
 19,581 by skovacs
Mon, 2014-04-21 06:47
Normal topic rosetta scores for mutated structures
by harshkhare » Wed, 2011-11-23 09:30 		1
 2,880 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Idealize in Rosetta 3.3
by jadolfbr » Tue, 2011-12-06 11:59 		2
 3,275 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic limit_cluster_size default value
by sacch » Thu, 2011-11-24 17:57 		2
 2,973 by sacch
Mon, 2014-04-21 06:47
Normal topic ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly'
by smiruthi » Mon, 2011-12-12 14:27 		1
 2,830 by rmoretti
Mon, 2014-04-21 06:47
Normal topic cluster.mpi running in MPI mode?
by sacch » Fri, 2011-11-18 23:30 		2
 4,495 by sacch
Mon, 2014-04-21 06:47
Normal topic ddg with ligands
by bhaines1 » Mon, 2011-12-05 14:32 		4
 5,652 by rmoretti
Mon, 2014-04-21 06:47
Normal topic proline patching problem
by xun » Tue, 2012-01-03 11:15 		3
 4,033 by xun
Mon, 2014-04-21 06:47
Normal topic Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-'
by AG88 » Thu, 2011-11-03 01:25 		4
 7,782 by weitzner
Mon, 2014-04-21 06:47
Normal topic Fragments for long sequence
by exchhattu » Tue, 2011-10-04 01:51 		2
 3,292 by exchhattu
Mon, 2014-04-21 06:47
Normal topic prepack_example.sh error message
by sacch » Sun, 2011-10-23 23:22 		2
 3,365 by sacch
Mon, 2014-04-21 06:47
Normal topic [SOLVED] swamped memory
by fred » Fri, 2011-09-16 08:19 		13
 12,525 by fred
Mon, 2014-04-21 06:47
Normal topic Enzyme design with variable CST blocks possible?
by petrikigor » Thu, 2011-10-06 11:24 		6
 7,299 by petrikigor
Mon, 2014-04-21 06:47
Normal topic InterfaceAnalyzer -resfile
by gw » Wed, 2011-11-02 16:01 		1
 2,947 by smlewis
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax Disulfide Bonds are not being retained
by brspurri » Wed, 2011-09-28 13:55 		1
 4,470 by parmef
Mon, 2014-04-21 06:47
Normal topic Error while running Enzyme Design
by saxen » Fri, 2011-10-21 15:46 		11
 11,196 by akpole
Mon, 2014-04-21 06:47
Normal topic fragment_picker with fasta only
by gw » Tue, 2011-11-15 13:20 		3
 4,496 by gw
Mon, 2014-04-21 06:47
Normal topic RosettaRemodel
by gw » Wed, 2011-09-14 13:24 		2
 3,688 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg_monomer.mpi
by gw » Thu, 2011-10-27 16:45 		3
 4,274 by smlewis
Mon, 2014-04-21 06:47
Normal topic minimize_with_cst problems (ddg_monomer)
by alexn » Tue, 2011-09-20 13:46 		2
 3,628 by alexn
Mon, 2014-04-21 06:47
Normal topic Structure determination combining X-ray diffraction data and NMR chemical shift
by MajorID » Mon, 2011-10-17 19:55 		2
 3,868 by rmoretti
Mon, 2014-04-21 06:47
Hot topic Error with recognizing rotamer library atoms
by oerbilgin » Fri, 2011-11-04 15:23 		19
 29,196 by oerbilgin
Mon, 2014-04-21 06:47
Normal topic Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved]
by loreseeker » Wed, 2011-09-14 08:13 		2
 3,698 by loreseeker
Mon, 2014-04-21 06:47
Normal topic [SOLVED]core.io.silent: [ WARNING ] ...
by fred » Wed, 2011-10-05 07:38 		8
 8,186 by fred
Mon, 2014-04-21 06:47
Normal topic behind threading protocol
by fred » Tue, 2011-10-25 05:37 		0
 2,256 by fred
Mon, 2014-04-21 06:47
Normal topic Abrelax - Dunbrack02.lib.bin missing
by omirus » Sun, 2011-09-18 06:30 		3
 5,011 by smlewis
Mon, 2014-04-21 06:47
Normal topic Standalone alanine scanning protocol
by exchhattu » Thu, 2011-10-13 19:40 		1
 5,486 by smlewis
Mon, 2014-04-21 06:47
Normal topic Unable to run Rosetta LoopModeling application
by BDBorrillo » Tue, 2011-07-19 14:06 		2
 5,524 by BDBorrillo
Mon, 2014-04-21 06:47
Normal topic Compiling Rosetta 3.3 on Linux Mint
by proteinproteindock » Thu, 2011-09-01 16:05 		2
 3,772 by proteinproteindock
Mon, 2014-04-21 06:47
Normal topic relax with resfile
by gw » Fri, 2011-08-05 10:57 		3
 6,261 by nannemdp
Mon, 2014-04-21 06:47
Normal topic flexpepdock flag "-packing:unboundrot"
by gw » Mon, 2011-07-11 12:23 		2
 4,140 by Ora Schueler-Furman
Mon, 2014-04-21 06:47
Normal topic Problems with Ligand Docking
by saxen » Fri, 2011-08-19 00:19 		8
 8,957 by glemmon
Mon, 2014-04-21 06:47
Normal topic score_jd2.linuxgccrelease documentation
by fglaser » Mon, 2011-08-01 04:08 		1
 4,109 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to define pi-pi stacking in cst file?
by lzx32 » Mon, 2011-07-04 23:47 		6
 8,264 by lzx32
Mon, 2014-04-21 06:47
Normal topic partial ab initio modeling
by fred » Wed, 2011-08-17 14:14 		3
 4,262 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fragment Files
by nkemjika » Fri, 2011-07-22 15:11 		1
 3,123 by dgront
Mon, 2014-04-21 06:47
Normal topic ERROR: no fragment to compute secondary structure
by byin » Sun, 2011-08-07 23:55 		3
 4,603 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ligand docking and protein design of an internal pocket in a protein with a cofactor
by oerbilgin » Mon, 2011-06-20 13:55 		2
 4,876 by frichter
Mon, 2014-04-21 06:47
Normal topic FlexPepDocking with GDP-bound protein
by LI » Sun, 2011-06-12 20:02 		3
 4,815 by rmoretti
Mon, 2014-04-21 06:47
Normal topic rosetta protein protein docking start up
by vk » Fri, 2011-06-24 09:01 		5
 7,151 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to add constrains to FlexPepDocking?
by MajorID » Thu, 2011-06-02 11:00 		2
 3,327 by MajorID
Mon, 2014-04-21 06:47
Normal topic cluster error
by sudhar » Fri, 2011-06-17 05:58 		1
 3,029 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Missing common atom definitions in constraints
by ic3reyes » Sat, 2011-06-11 13:09 		3
 5,191 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling of side-chains onto membrane ab initio cluster?
by akfried » Thu, 2011-06-23 04:03 		3
 4,114 by nkemjika
Mon, 2014-04-21 06:47
Normal topic flexpep docking problem-----How to do with phosphorylation peptide?
by MajorID » Thu, 2011-06-02 00:37 		4
 6,373 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Why do non proten ligands get a very high score in kinematic loop modeling/ in general?
by a_s_a » Wed, 2011-06-15 00:03 		8
 8,077 by a_s_a
Mon, 2014-04-21 06:47
Normal topic Molecular Replacement with multiple chains
by brspurri » Fri, 2011-06-10 08:25 		0
 2,188 by brspurri
Mon, 2014-04-21 06:47
Normal topic DNA Interface design
by zadie1118 » Wed, 2011-06-22 07:05 		0
 2,195 by zadie1118
Mon, 2014-04-21 06:47
Normal topic protein structure prediction using relax -- high-powered jobs
by rfieldhouse » Mon, 2011-05-30 18:29 		7
 7,839 by dimaio
Mon, 2014-04-21 06:47
Normal topic score to use for picking top docking solutions?
by sudhar » Tue, 2011-06-14 06:47 		3
 5,980 by weitzner
Mon, 2014-04-21 06:47
Normal topic Floppytail modelling
by felipet » Fri, 2011-06-24 09:23 		2
 3,812 by felipet
Mon, 2014-04-21 06:47
Normal topic cluster,how to get the statistic data
by MajorID » Wed, 2011-06-08 09:20 		0
 1,998 by MajorID
Mon, 2014-04-21 06:47
Normal topic Rosetta-Holes Scoring Function
by kroberts » Fri, 2011-05-13 14:05 		11
 15,012 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Problem with symmetric docking
by saxen » Fri, 2011-04-29 15:15 		3
 4,187 by smlewis
Mon, 2014-04-21 06:47
Normal topic kinematic loop modeling multiple input: possible?
by a_s_a » Thu, 2011-05-12 09:33 		2
 3,384 by a_s_a
Mon, 2014-04-21 06:47
Normal topic Using Rosetta Docking for nucleic acids
by Adrien Guilhot » Thu, 2011-04-28 06:16 		3
 5,190 by Adrien Guilhot
Mon, 2014-04-21 06:47
Normal topic ab inito memberane(error in alignblast.pl)
by kingljy » Tue, 2011-05-03 23:41 		6
 7,202 by karthishanmugam
Mon, 2014-04-21 06:47
Normal topic Problem readin .ccp4 map file
by jljbbc » Tue, 2011-05-03 11:29 		4
 5,844 by jljbbc
Mon, 2014-04-21 06:47
Normal topic placing a constraint during structure prediction
by cbala » Thu, 2011-04-07 08:54 		1
 3,249 by ic3reyes
Mon, 2014-04-21 06:47
Normal topic Destination of score.fsc file
by anirbanzz » Wed, 2011-04-20 23:30 		1
 2,887 by smlewis
Mon, 2014-04-21 06:47
Normal topic Dimer of dimers
by smiruthi » Fri, 2011-04-15 10:41 		4
 7,161 by IAndre
Mon, 2014-04-21 06:47
Normal topic membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template?
by fglaser » Thu, 2011-04-07 07:57 		0
 2,289 by fglaser
Mon, 2014-04-21 06:47
Normal topic flexpep docking problem
by michael_luntan » Mon, 2011-04-18 17:15 		5
 5,783 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic rna structure prediction
by cbala » Thu, 2011-04-14 07:42 		5
 5,972 by mkoohim
Mon, 2014-04-21 06:47
Normal topic protein-protein docking
by cbala » Mon, 2011-04-18 09:15 		1
 2,671 by smlewis
Mon, 2014-04-21 06:47
Normal topic Help with enzyme design
by lzx32 » Fri, 2011-04-08 22:29 		6
 6,652 by lzx32
Mon, 2014-04-21 06:47
Normal topic flexpep docking, select the decoy to do the further docking, questions
by michael_luntan » Fri, 2011-04-22 04:43 		2
 3,579 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic problem when exact pdb from silent file
by wenchangyu2008 » Mon, 2011-04-18 00:42 		1
 3,211 by wenchangyu2008
Mon, 2014-04-21 06:47
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