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Rosetta 3 - Applications

Topic / Topic starter Replies Views Last postsort descending
Normal topic Running RosettaHoles2
by weehee » Wed, 2013-02-13 09:35
3
2,501 by weehee
Mon, 2014-04-21 06:47
Hot topic membrane scoring function performance
by tevang » Wed, 2013-03-20 08:40
15
10,872 by smlewis
Mon, 2014-04-21 06:47
Normal topic symmetric fixbb design with design_hpatch
by sdh_h » Sat, 2013-02-02 01:48
2
2,007 by ronj
Mon, 2014-04-21 06:47
Normal topic Results of enzyme_design not consistent with Resfile
by yogeshkd » Thu, 2013-02-14 15:56
6
4,677 by yogeshkd
Mon, 2014-04-21 06:47
Normal topic dihedral_between_bonded_children: atoms are not both my children!
by pdbb » Fri, 2013-04-05 06:40
3
2,244 by smlewis
Mon, 2014-04-21 06:47
Normal topic ligand conformer generation for enzyme design
by bo » Mon, 2013-02-11 16:51
1
1,770 by smlewis
Mon, 2014-04-21 06:47
Normal topic Reproducing the exact result using information from previos run
by nawsad » Thu, 2013-03-14 12:05
2
1,729 by nawsad
Mon, 2014-04-21 06:47
Normal topic Docking with constraints
by ytao » Tue, 2013-04-02 09:45
6
5,790 by smlewis
Mon, 2014-04-21 06:47
Normal topic Multiple ligands in enzyme design application
by yogeshkd » Mon, 2013-02-11 10:13
4
3,825 by yogeshkd
Mon, 2014-04-21 06:47
Normal topic loop re-modeling std::out_of_range
by rlwoltz » Tue, 2013-03-12 18:11
9
5,807 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fold tree C->N: RosettaScripts
by aroop » Wed, 2013-02-13 10:31
8
5,561 by smlewis
Mon, 2014-04-21 06:47
Normal topic loopmodel thinks there are no residues in the pose
by lah435 » Wed, 2013-03-27 02:46
3
3,087 by rmoretti
Mon, 2014-04-21 06:47
Normal topic comparative modelling and broker
by felipet » Tue, 2013-02-05 08:33
4
2,963 by smlewis
Mon, 2014-04-21 06:47
Normal topic score and relax
by Prasanth Kumar » Thu, 2013-05-02 05:09
1
2,561 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic modeling 4 linkers between 2 domains
by pdbb » Thu, 2013-05-16 08:23
1
1,786 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with always_constrained_relax_script
by wsgosal » Wed, 2013-05-29 04:39
3
3,502 by rmoretti
Mon, 2014-04-21 06:47
Normal topic contents of span file
by tevang » Mon, 2013-04-15 05:01
1
1,911 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax with protein+complex
by Prasanth Kumar » Wed, 2013-05-08 23:16
4
3,824 by Prasanth Kumar
Mon, 2014-04-21 06:47
Normal topic Problems with ligand when running RosettaLigand
by Cat » Mon, 2013-05-20 15:58
5
4,605 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Error when running cluster
by aloshbau » Wed, 2013-05-01 20:45
3
3,311 by rmoretti
Mon, 2014-04-21 06:47
Normal topic deltaG calculations
by Prasanth Kumar » Wed, 2013-05-15 07:06
3
4,751 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ddG filter gives deltaG calculation number?
by jarod » Tue, 2013-05-28 23:43
2
2,907 by jarod
Mon, 2014-04-21 06:47
Normal topic number of structures in homology modeling for cluster analysis
by pdbb » Fri, 2013-04-12 08:52
1
1,980 by smlewis
Mon, 2014-04-21 06:47
Normal topic docking with constraints
by talavera » Tue, 2013-05-07 01:50
1
3,167 by rmoretti
Mon, 2014-04-21 06:47
Normal topic mover "RepackMinimize" does not support chains > 2?
by jarod » Mon, 2013-05-20 02:17
6
5,382 by jarod
Mon, 2014-04-21 06:47
Normal topic Problems when running Rosetta VIP with cofactors
by Basantab » Fri, 2013-04-26 13:31
14
10,670 by Basantab
Mon, 2014-04-21 06:47
Normal topic Modeling flexible linkers with Floppytail
by pdbb » Sun, 2013-05-12 15:55
2
2,370 by smlewis
Mon, 2014-04-21 06:47
Normal topic Pepspec Errors running 3.4
by rrphenix » Tue, 2013-05-28 12:08
4
3,037 by rmoretti
Mon, 2014-04-21 06:47
Normal topic make_rot_lib issue
by jarek » Thu, 2013-04-11 08:21
4
3,567 by smlewis
Mon, 2014-04-21 06:47
Normal topic in silico affinity maturation design
by jarod » Mon, 2013-05-20 02:07
11
8,967 by jarod
Mon, 2014-04-21 06:47
Normal topic PDB format for RosettaDNA
by brspurri » Thu, 2013-05-30 11:21
5
4,840 by brspurri
Mon, 2014-04-21 06:47
Normal topic Error when running Remodel with EnzDes constraint file
by aloshbau » Wed, 2013-04-17 22:23
2
2,982 by aloshbau
Mon, 2014-04-21 06:47
Normal topic ligand_docking_analysis
by Prasanth Kumar » Thu, 2013-05-09 23:51
4
3,639 by rmoretti
Mon, 2014-04-21 06:47
Normal topic No interface for protein - Interface Analyzer
by aloshbau » Tue, 2013-05-21 21:00
1
2,158 by jarod
Mon, 2014-04-21 06:47
Normal topic strange effect in: SymDock.linuxgccrelease
by ast » Tue, 2013-06-11 11:05
3
2,734 by ast
Mon, 2014-04-21 06:48
Normal topic trouble in floppytail modelling
by ytao » Thu, 2013-06-27 13:15
1
1,793 by ytao
Mon, 2014-04-21 06:48
Normal topic select_best_unique_ligand_poses output
by ast » Thu, 2013-07-11 02:33
2
2,392 by ast
Mon, 2014-04-21 06:48
Normal topic interface_delta ligand_docking
by Prasanth Kumar » Tue, 2013-06-18 08:37
1
1,895 by rmoretti
Mon, 2014-04-21 06:48
Normal topic membrane modeling error
by benniu2004 » Mon, 2013-07-01 17:59
1
1,846 by smlewis
Mon, 2014-04-21 06:48
Normal topic Why is proline hydroxylated?
by kwonglynn » Tue, 2013-06-25 02:38
3
3,956 by rmoretti
Mon, 2014-04-21 06:48
Normal topic pdb2vall
by JadAbbass » Mon, 2013-07-08 12:11
3
2,786 by rmoretti
Mon, 2014-04-21 06:48
Normal topic SymDock for docking only the ligand?
by ast » Mon, 2013-06-17 09:53
4
3,841 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Protein-DNA Docking using RosettaScripts?
by brspurri » Fri, 2013-06-07 09:06
1
3,510 by rmoretti
Mon, 2014-04-21 06:48
Normal topic printing our per-residue energies including H-bonding energies
by vijayan » Tue, 2013-07-02 08:51
2
2,884 by rmoretti
Mon, 2014-04-21 06:48
Normal topic A question on the logic of enzyme design
by agulsevin » Thu, 2013-06-13 08:10
2
2,973 by agulsevin
Mon, 2014-04-21 06:48
Normal topic CSrosetta run problem
by erin_cutts » Fri, 2013-06-28 09:52
2
2,770 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic Add missing residues in loop modeling
by exchhattu » Thu, 2013-06-20 17:38
1
2,767 by smlewis
Mon, 2014-04-21 06:48
Normal topic Discrepancy between the total pose energy and sum of per residue energies
by vijayan » Tue, 2013-07-02 07:24
3
3,282 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Ligand creation
by Prasanth Kumar » Fri, 2013-08-02 09:48
1
1,830 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Unsatisfied interface H-bond in Ligand docking
by Prasanth Kumar » Thu, 2013-07-18 12:04
1
3,275 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Error while running RosettaLigand
by Ryhon Wang » Tue, 2013-07-30 02:51
4
3,798 by Ryhon Wang
Mon, 2014-04-21 06:48
Hot topic A problem with RosettaLigand
by Rosettasz » Fri, 2013-07-19 16:09
16
13,529 by Rosettasz
Mon, 2014-04-21 06:48
Normal topic Alanine Scanning
by gjbartlett » Mon, 2013-08-05 07:02
1
2,731 by rmoretti
Mon, 2014-04-21 06:48
Normal topic high-res docking
by tfliu » Mon, 2013-07-15 02:49
2
2,349 by tfliu
Mon, 2014-04-21 06:48
Normal topic Binding energy contribution broken down by residue
by brspurri » Tue, 2013-07-23 12:47
1
2,046 by rmoretti
Mon, 2014-04-21 06:48
Normal topic docking energies - deltadeltaG calculation
by ast » Fri, 2013-07-19 07:30
5
7,583 by rmoretti
Mon, 2014-04-21 06:48
Normal topic creating a model using a base pdb and extending a chain
by rlwoltz » Fri, 2013-07-12 15:35
1
2,017 by nawsad
Mon, 2014-04-21 06:48
Normal topic About loophash and batchrelax.
by Run » Mon, 2013-07-22 23:54
14
8,910 by Run
Mon, 2014-04-21 06:48
Normal topic Loop prediction
by yzhou » Thu, 2013-07-18 14:24
3
3,137 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Comparative modeling
by MRH » Mon, 2013-08-19 23:08
1
1,836 by smlewis
Mon, 2014-04-21 06:48
Normal topic Loop modelling before peptide docking
by wsgosal » Tue, 2013-10-01 07:24
4
3,853 by wsgosal
Mon, 2014-04-21 06:48
Normal topic Error with FlexPepDock
by aloshbau » Sat, 2013-08-10 11:51
1
1,926 by rmoretti
Mon, 2014-04-21 06:48
Normal topic homology membrane modeling demo in rosetta 3.5
by rlwoltz » Mon, 2013-09-09 10:26
1
2,237 by smlewis
Mon, 2014-04-21 06:48
Normal topic Full Protocol
by shekhar » Fri, 2013-10-04 01:07
1
2,348 by rmoretti
Mon, 2014-04-21 06:48
Hot topic usage of score3
by Run » Sat, 2013-09-28 02:06
16
11,978 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic comparative modeling of protein-ligand complex
by tevang » Mon, 2013-09-09 09:06
3
3,133 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Ligand atom RMSD calculation
by lkrathn » Wed, 2013-08-14 21:25
2
3,681 by lkrathn
Mon, 2014-04-21 06:48
Normal topic Problem with SymmDock in helical symmetry
by mumdonar » Wed, 2013-09-18 03:59
2
2,943 by mumdonar
Mon, 2014-04-21 06:48
Normal topic submit_NGK.py not creating output files
by nkato2 » Wed, 2013-08-28 23:37
1
1,866 by rmoretti
Mon, 2014-04-21 06:48
Normal topic rosetta.script segmentation fault
by felipet » Wed, 2013-10-02 10:41
4
4,441 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic RosettaRemodel can not work now?
by myputer » Tue, 2013-08-13 16:56
7
5,355 by rmoretti
Mon, 2014-04-21 06:48
Normal topic About scorefunction.
by Run » Mon, 2013-09-09 23:08
7
5,034 by rmoretti
Mon, 2014-04-21 06:48
Normal topic profit program in antibody design
by tzhou » Tue, 2013-10-15 23:29
1
2,091 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Score - Strange message
by Ashafix » Wed, 2013-11-20 15:23
2
2,557 by Ashafix
Mon, 2014-04-21 06:48
Normal topic restrain residues in docking
by albumns » Sat, 2013-11-02 08:52
1
1,955 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic MaxSub and MaxSub2.0
by JadAbbass » Tue, 2013-10-15 13:36
2
2,588 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic Make Fragments
by Run » Mon, 2013-11-11 05:31
1
1,964 by smlewis
Mon, 2014-04-21 06:48
Normal topic symmetrical membrane modeling
by rlwoltz » Tue, 2013-10-29 03:41
5
4,269 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic assymetric dymer modelling with comparative and ab initio
by marcia » Mon, 2013-10-14 08:33
3
3,639 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Symmetric docking with multiple chains as asymmetric unit
by sarah29 » Tue, 2013-11-05 20:24
1
2,445 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Symmetry definition for coiled-coil dimer and trimer
by kszczepaniak » Fri, 2013-10-11 05:33
2
4,636 by kszczepaniak
Mon, 2014-04-21 06:48
Normal topic Problem about energy score
by tfliu » Tue, 2013-11-05 02:09
7
5,483 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic the flexpepdock refinement and ab-initio
by tfliu » Mon, 2013-12-23 19:17
6
4,517 by tfliu
Mon, 2014-04-21 06:48
Normal topic rosetta's keyword list
by fred » Tue, 2014-01-21 06:03
1
2,037 by rmoretti
Mon, 2014-04-21 06:48
Normal topic protein-protein docking with flexible backbone
by tim » Fri, 2013-12-20 05:52
1
3,540 by rmoretti
Mon, 2014-04-21 06:48
Normal topic FlexPepDock and total score problem
by tkellici » Fri, 2014-01-17 06:07
2
2,315 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic Ab-initio modeling on part of the protein
by xiayanlawrence » Thu, 2013-12-19 07:45
1
2,701 by rmoretti
Mon, 2014-04-21 06:48
Normal topic fixbb with symmetry error
by Prasanth Kumar » Sun, 2014-01-26 10:56
4
3,996 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic do mpi apps share memory?
by fred » Thu, 2014-01-23 11:49
2
2,402 by fred
Mon, 2014-04-21 06:48
Normal topic Abinito for Multimers
by Prasanth Kumar » Wed, 2014-01-22 17:45
2
2,418 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic Cannot get a negative score after relax
by kxiao » Tue, 2014-01-28 22:28
6
5,557 by rmoretti
Mon, 2014-04-21 06:48
Normal topic minirosetta: weird behavior
by fred » Wed, 2014-01-22 05:57
4
3,732 by fred
Mon, 2014-04-21 06:48
Normal topic extract silent error - tag mismatch
by shrutikhare » Thu, 2014-04-03 00:13
5
5,077 by rmoretti
Mon, 2014-04-21 10:47
Normal topic Scoring residue vs. organic ligand
by almeida » Tue, 2014-04-08 12:18
12
9,700 by rmoretti
Thu, 2014-04-24 14:43
Normal topic ambiguous constraints
by shrutikhare » Mon, 2014-05-12 04:42
1
2,414 by rmoretti
Mon, 2014-05-12 08:25
Normal topic Connecting linkers
by Prasanth Kumar » Tue, 2014-05-06 00:53
1
2,161 by smlewis
Mon, 2014-05-12 08:32
Normal topic clustering in RosettaRemodel
by cheyuk » Wed, 2014-04-23 03:09
3
2,842 by rmoretti
Mon, 2014-05-12 08:45
Normal topic How do I explicitly add residues for design in the interface optimization script?
by ahonegger » Mon, 2014-05-12 07:40
2
2,468 by ahonegger
Mon, 2014-05-12 09:08
Normal topic Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking)
by snorp » Mon, 2014-04-14 13:01
2
2,874 by jadolfbr
Mon, 2014-05-12 10:41
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
1,883 by rmoretti
Mon, 2014-05-12 15:08
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