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Rosetta 3 - Applications

Topic / Topic starter Replies Views Last postsort ascending
Normal topic Snugdock_input
by luicui » Wed, 2017-01-18 16:48
5
2,462 by smlewis
Fri, 2017-01-20 08:14
Normal topic RosettaCM Tutorials
by smathersc » Wed, 2017-01-11 15:59
5
2,957 by rmoretti
Thu, 2017-01-19 09:11
Normal topic Domain insertion with Non-CAA
by mwfranklin » Mon, 2017-01-16 12:30
0
1,144 by mwfranklin
Mon, 2017-01-16 12:30
Normal topic comparative modeling of a homodimer
by banshee » Mon, 2017-01-09 18:34
1
1,437 by rmoretti
Wed, 2017-01-11 13:00
Normal topic ligand docking, how to combine some silent.out files into a silent_all.out file
by Ryhon Wang » Fri, 2013-12-06 01:53
6
5,106 by rmoretti
Wed, 2017-01-11 12:53
Normal topic Using abinition to predict a new (previously unsolved) structure.
by ac.research » Mon, 2017-01-09 00:59
0
816 by ac.research
Mon, 2017-01-09 00:59
Normal topic ArchiveManager -- spinning down
by Marius1987 » Fri, 2016-12-23 03:10
1
1,104 by smlewis
Fri, 2016-12-23 07:04
Normal topic Altering substrate specificity
by bp » Thu, 2016-12-22 02:45
2
1,553 by bp
Thu, 2016-12-22 07:54
Normal topic How to scan double mutations in RosettaScripts?
by msardejani » Mon, 2016-12-12 16:52
2
1,496 by msardejani
Mon, 2016-12-12 17:48
Normal topic Including ab-initio predicted model in fragment library generation
by ashu4487 » Thu, 2016-12-08 17:49
2
1,428 by ashu4487
Sun, 2016-12-11 19:03
Normal topic Design with limited number of aminoacids at given position
by sdh_h » Sun, 2016-12-04 03:44
1
1,136 by smlewis
Thu, 2016-12-08 15:50
Normal topic backrub application, resfile, and pivot_residues
by tylerborrman » Tue, 2016-12-06 14:46
0
709 by tylerborrman
Tue, 2016-12-06 14:46
Normal topic Ddg_monomer: implementing disulfides
by kabol » Wed, 2016-11-30 02:39
1
1,405 by rmoretti
Wed, 2016-11-30 07:46
Normal topic Should FastRelax be commented out in Calculate_protein_protein_ddg demo?
by cossio » Mon, 2016-10-31 12:01
11
5,724 by cossio
Mon, 2016-11-21 07:56
Normal topic FloppyTail options error
by DmitriiN » Fri, 2016-11-11 02:54
1
1,113 by smlewis
Fri, 2016-11-11 08:33
Normal topic RosettaMatch outputs
by mwfranklin » Tue, 2016-10-11 11:46
1
1,350 by rmoretti
Fri, 2016-10-14 08:56
Normal topic Problem in redesign binding site
by armart999 » Fri, 2016-10-14 01:55
1
1,477 by rmoretti
Fri, 2016-10-14 08:42
Normal topic symmetric design in the presence of a nonsymmetric ligand
by msardejani » Fri, 2016-09-30 15:17
6
3,903 by msardejani
Sat, 2016-10-01 12:55
Normal topic RMSD calculation
by hamedkhakzad » Tue, 2016-09-13 04:56
2
2,430 by rmoretti
Wed, 2016-09-14 02:05
Normal topic refining crystal structure using phenix without CIF file
by banshee » Fri, 2016-09-09 01:14
2
1,977 by banshee
Mon, 2016-09-12 23:41
Normal topic AbinitioRelax with native fragments
by ks » Mon, 2016-09-05 03:03
5
3,385 by ks
Mon, 2016-09-12 03:14
Normal topic why is talaris2014 scoring fuction not used with ligand docking?
by banshee » Fri, 2016-09-09 01:19
1
1,348 by rmoretti
Fri, 2016-09-09 07:47
Normal topic Enzyme Design with additional covalent backbone bonds
by mwfranklin » Wed, 2016-08-03 10:23
1
1,616 by rmoretti
Mon, 2016-09-05 11:29
Normal topic Trouble running Enzyme Design application
by danaitop » Thu, 2016-08-11 13:34
2
1,669 by rmoretti
Mon, 2016-09-05 11:10
Normal topic modeling an extracellular loop of a transmembrane protein
by Hothman » Fri, 2016-08-12 06:16
5
3,034 by rmoretti
Mon, 2016-09-05 10:59
Normal topic fragment picker does not follow dihedral constraints
by attesor » Tue, 2016-05-24 23:22
12
7,032 by smlewis
Wed, 2016-08-17 07:56
Normal topic Collecting all decoys from batch files
by aep » Sun, 2016-08-07 12:23
2
1,551 by aep
Sat, 2016-08-13 13:03
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Mon, 2016-07-25 13:35
1
1,630 by gsuchunli
Mon, 2016-07-25 13:56
Normal topic RosettaMatch and CST files
by mwfranklin » Mon, 2016-07-25 11:49
0
1,399 by mwfranklin
Mon, 2016-07-25 11:49
Normal topic Loop design with length variation
by jarod » Thu, 2016-06-16 19:54
3
2,552 by rmoretti
Tue, 2016-07-12 09:41
Normal topic Rebuilding the structure from unknown residues
by sushreet » Mon, 2016-06-27 09:32
4
3,146 by rmoretti
Tue, 2016-07-12 09:35
Normal topic revert_design_to_native app comparison to FavorNativeResidue mover
by nwhoppe » Wed, 2016-06-29 14:35
3
2,710 by rmoretti
Tue, 2016-07-12 09:30
Normal topic scoring input pdbs as the same as docking score
by hamedkhakzad » Fri, 2016-07-01 07:15
3
2,269 by rmoretti
Tue, 2016-07-12 09:05
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Wed, 2016-07-06 10:35
1
1,327 by rmoretti
Tue, 2016-07-12 08:56
Normal topic How to restart RASREC run
by aep » Fri, 2016-07-01 04:39
2
1,453 by aep
Fri, 2016-07-01 06:54
Normal topic fragment_picker.mpi.linuxgccrelease can't find : libsqlite3.so
by starone » Mon, 2016-06-20 19:22
11
8,231 by starone
Fri, 2016-06-24 18:29
Normal topic Ligand Docking with ARLS
by cam11 » Thu, 2016-06-23 09:34
1
1,359 by rmoretti
Thu, 2016-06-23 10:55
Normal topic problem creating lips4 file using run_lips.pl
by adva » Sun, 2015-02-15 06:22
5
5,307 by linucks
Mon, 2016-06-20 12:02
Normal topic xyzVector error in Enzyme design
by ajmbarbosa » Tue, 2016-01-05 09:46
3
2,734 by rmoretti
Fri, 2016-06-17 10:36
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:16
1
1,197 by rmoretti
Fri, 2016-06-17 10:24
Normal topic No output pdb files after docking protein and DNA/RNA
by yzq » Thu, 2012-10-25 08:23
11
8,079 by rmoretti
Fri, 2016-06-17 10:22
Normal topic Error in Loop modeling and other queries
by ashu4487 » Wed, 2016-05-11 18:23
1
1,486 by rmoretti
Fri, 2016-06-17 10:15
Normal topic Helical Symmetry Axis
by Sandy » Tue, 2016-05-31 18:48
0
1,148 by Sandy
Tue, 2016-05-31 18:48
Normal topic Rosetta relax problem
by jingwei xu » Wed, 2016-03-09 21:41
2
3,348 by jingwei xu
Wed, 2016-05-04 23:28
Normal topic cross correlation calculation
by jingwei xu » Sat, 2016-04-16 19:11
2
1,713 by jingwei xu
Wed, 2016-05-04 23:26
Normal topic ddg_monomer: what is the theoretical solution condition for the scoring?
by lanselibai » Sat, 2016-04-30 03:26
3
2,525 by smlewis
Mon, 2016-05-02 08:20
Normal topic Symmetry definition for apolar helix
by vanrooyenjason » Tue, 2016-01-05 05:20
1
2,255 by rmoretti
Fri, 2016-04-29 09:21
Normal topic Ab-initio peptide-protein docking
by suhail » Sun, 2013-06-23 16:20
9
8,618 by rmoretti
Fri, 2016-04-29 08:57
Normal topic RosettaScripts - SetupNCS mover
by felipet » Fri, 2016-03-25 12:42
2
1,654 by rmoretti
Fri, 2016-04-29 08:26
Normal topic ddg_monomer mutations list: How to specify chain ID?
by cossio » Tue, 2014-12-09 14:26
13
10,625 by rmoretti
Thu, 2016-04-28 16:43
Normal topic Files for Spatial Constraints
by Derek » Tue, 2016-04-12 01:00
1
1,183 by Derek
Wed, 2016-04-27 01:31
Normal topic Finding lowest energy structure among generated structures
by Marius1987 » Sun, 2016-04-10 11:38
0
994 by Marius1987
Sun, 2016-04-10 12:09
Normal topic Enzyme Design - Score File
by nwhoppe » Thu, 2016-04-07 15:11
1
1,336 by rmoretti
Fri, 2016-04-08 07:39
Normal topic Constraints in RosettaCM
by kbuhr » Fri, 2015-07-31 06:55
3
2,795 by kbuhr
Mon, 2016-03-28 01:08
Normal topic Missing CS-HM-Rosetta Binary files
by Marius1987 » Wed, 2016-02-10 05:52
3
2,626 by Marius1987
Mon, 2016-03-14 04:34
Normal topic De novo model-building guided by exprimental density data
by dee2711453 » Thu, 2016-03-10 17:28
3
2,215 by dee2711453
Fri, 2016-03-11 21:32
Normal topic Generating non-redundat dataset for loop models
by dario.corrada » Wed, 2016-03-09 03:00
1
1,170 by smlewis
Wed, 2016-03-09 04:11
Normal topic wallpaper symmetry definition file
by aaj » Fri, 2016-02-26 08:40
0
880 by aaj
Fri, 2016-02-26 08:40
Normal topic Difference between movemap and -pivot_residues
by aloshbau » Wed, 2016-02-24 13:21
1
1,395 by rmoretti
Wed, 2016-02-24 14:39
Normal topic creating compound task mover
by aaj » Wed, 2016-02-24 04:48
2
1,591 by aaj
Wed, 2016-02-24 07:37
Normal topic Space Swap!!!
by jrcf » Sun, 2016-02-14 11:43
2
1,644 by jrcf
Mon, 2016-02-15 17:59
Normal topic No Space
by jrcf » Mon, 2016-01-11 16:18
3
2,223 by jrcf
Fri, 2016-02-12 16:42
Normal topic CS-HM-Rosetta
by pwurm » Thu, 2013-03-07 12:56
6
4,861 by Marius1987
Fri, 2016-02-05 07:20
Normal topic Homology Modelling with cofactors
by Derek Smith » Thu, 2015-07-09 08:24
3
3,026 by Derek Smith
Wed, 2016-02-03 05:47
Normal topic ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result???
by Ryhon Wang » Mon, 2016-01-04 22:36
1
2,040 by rmoretti
Tue, 2016-01-05 08:35
Normal topic RosettaLigand: How to score native pose in protein-ligand docking experiment?
by Ryhon Wang » Tue, 2015-11-10 01:30
5
3,871 by Ryhon Wang
Mon, 2016-01-04 19:59
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Mon, 2016-01-04 11:26
0
935 by achambe
Mon, 2016-01-04 11:26
Normal topic CartesianRefiner compilation problem
by DmitriiN » Tue, 2015-12-15 08:52
1
1,280 by rmoretti
Tue, 2015-12-15 09:48
Normal topic Inserting residues using RosettaRemodel
by eleishaj » Tue, 2015-11-24 08:54
7
5,433 by eyong123
Wed, 2015-12-09 07:17
Normal topic RosettaScripts - FastRelax loops
by jtmacd » Wed, 2015-11-18 09:32
2
2,860 by jtmacd
Fri, 2015-12-04 03:11
Normal topic Fixing part of a ligand in dock-design
by hssnzdh2 » Mon, 2015-11-23 17:14
1
1,419 by rmoretti
Tue, 2015-11-24 16:16
Normal topic cluster.linuxgccrelease Killed error
by samuelrpita » Fri, 2015-11-20 05:56
1
1,562 by rmoretti
Tue, 2015-11-24 16:07
Normal topic RosettaCM Biological Assembly
by jrcf » Mon, 2015-10-26 11:01
5
5,073 by rmoretti
Tue, 2015-11-24 15:30
Normal topic Docking seems to not parse the -nstruct flag
by rosend » Tue, 2015-11-17 12:01
2
2,637 by rosend
Tue, 2015-11-17 12:12
Normal topic very good I_sc values (if not too good)
by attesor » Tue, 2015-11-03 03:30
2
1,960 by attesor
Tue, 2015-11-17 07:36
Normal topic what does initialize_rigid_body_dofs do?
by attesor » Mon, 2015-10-26 05:12
3
2,643 by rmoretti
Tue, 2015-11-10 11:35
Normal topic Protein/Protein Ddg demo: How to write predicted mutant structures?
by cossio » Wed, 2015-11-04 20:14
1
1,196 by rmoretti
Tue, 2015-11-10 11:10
Normal topic FloppyTail :How to specify range of design(mutation)
by syoifczeri » Mon, 2015-11-02 04:14
6
4,435 by syoifczeri
Sat, 2015-11-07 21:42
Normal topic JD2 MPI
by jrcf » Wed, 2015-10-28 14:45
1
1,469 by rmoretti
Sat, 2015-10-31 08:57
Normal topic Can I change high-resolution filter in SymDock
by attesor » Fri, 2015-10-23 07:35
2
1,684 by attesor
Mon, 2015-10-26 09:01
Normal topic heads up for constraints using GAUSSIANFUNC
by attesor » Thu, 2015-10-22 07:30
1
1,175 by smlewis
Thu, 2015-10-22 08:04
Normal topic symmetric docking and constraints
by ytao » Thu, 2013-05-02 12:08
5
5,655 by attesor
Wed, 2015-10-21 13:53
Normal topic Rosetta Holes
by zsun12 » Wed, 2015-09-30 11:40
1
2,578 by rmoretti
Mon, 2015-10-12 15:20
Normal topic Rosetta dock irmsd
by Pernille » Sun, 2015-04-26 13:51
5
4,731 by rmoretti
Mon, 2015-10-12 15:10
Normal topic Generate fragment file on my computer
by jrcf » Mon, 2015-09-21 15:41
2
2,749 by jrcf
Mon, 2015-10-05 21:32
Normal topic ddg_monomer "ERROR: seqpos >= 1"
by cossio » Fri, 2015-10-02 12:20
1
1,508 by rmoretti
Fri, 2015-10-02 12:30
Normal topic -kill_hairpin error
by jadolfbr » Wed, 2011-10-05 18:53
11
11,669 by rmoretti
Mon, 2015-09-28 15:00
Normal topic fixbb algorithm reference?
by tylerborrman » Wed, 2015-09-23 10:20
4
3,530 by tylerborrman
Mon, 2015-09-28 09:30
Normal topic score:weights for fixbb application in Rosetta 3.5
by tylerborrman » Tue, 2015-07-28 14:16
2
1,794 by tylerborrman
Wed, 2015-09-23 10:51
Normal topic Not found some Flags
by jrcf » Sat, 2015-09-19 12:08
2
2,527 by jrcf
Mon, 2015-09-21 11:10
Normal topic Fnat and Irms are nan in score.sc from docking_protocol?
by cossio » Sun, 2015-09-13 07:34
2
2,246 by rmoretti
Thu, 2015-09-17 12:47
Normal topic Use NMR ensemble in protein-protein docking?
by cossio » Sun, 2015-09-13 07:57
2
2,017 by cossio
Tue, 2015-09-15 12:48
Normal topic How to model missing residues on a protein from multiple PDB files?
by cossio » Fri, 2015-08-21 07:18
6
9,249 by rmoretti
Fri, 2015-09-11 13:27
Normal topic Antibody Docking application
by Maryam_tabasinezhad » Sat, 2015-09-05 09:58
1
1,592 by jadolfbr
Wed, 2015-09-09 12:35
Normal topic Antibody modeling
by Maryam_tabasinezhad » Fri, 2015-09-04 11:00
4
3,435 by rmoretti
Wed, 2015-09-09 12:08
Normal topic Is it possible to restart the ddg_monomer.linuxgccrelease?
by lanselibai » Mon, 2015-09-07 03:46
1
1,316 by rmoretti
Wed, 2015-09-09 12:01
Normal topic ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease
by cossio » Thu, 2015-09-03 08:46
1
1,951 by rmoretti
Fri, 2015-09-04 10:25
Normal topic InterfaceAnalyzer dSasa calculation
by mintseris » Wed, 2015-09-02 09:43
2
2,878 by jadolfbr
Thu, 2015-09-03 16:18
Normal topic Distinctions between InterfaceAnalyzer and RosettaScript
by achambe » Wed, 2015-06-17 10:14
6
5,316 by rmoretti
Wed, 2015-09-02 12:43
Normal topic Per residue scoring
by chelsell » Mon, 2015-08-17 14:43
3
2,803 by rmoretti
Wed, 2015-09-02 12:33
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