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Rosetta 3 - Applications
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Side-chain grafting at the fixed protein and position by Kazu » Wed, 2020-05-20 08:49 |
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237 |
by Kazu Wed, 2020-05-20 08:49 |
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Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB" by brspurri » Fri, 2017-03-24 10:52 |
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2,279 |
by brspurri Fri, 2017-03-24 11:35 |
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Single Strand DNA (ssDNA) 3D structure prediction by mkoohim » Fri, 2012-04-06 00:52 |
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11,327 |
by smlewis Mon, 2014-04-21 06:47 |
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SnugDock - What protocol should I use? by dfcoelho » Tue, 2018-11-27 07:32 |
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2,983 |
by dfcoelho Wed, 2018-11-28 08:07 |
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Snugdock+ensembledock usage by Anouk » Mon, 2014-09-22 08:09 |
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2,057 |
by jadolfbr Mon, 2014-10-20 13:42 |
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SnugDocking a VHH:antigen complex possible? by David Weis » Thu, 2017-02-16 05:57 |
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3,501 |
by rmoretti Thu, 2017-07-06 13:00 |
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Snugdock_error by luicui » Thu, 2017-02-09 21:06 |
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951 |
by smlewis Thu, 2017-02-09 21:50 |
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Snugdock_input by luicui » Wed, 2017-01-18 16:48 |
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2,424 |
by smlewis Fri, 2017-01-20 08:14 |
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some application troubles when using resfile flag by chenchaozhao » Tue, 2011-04-05 00:05 |
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17,684 |
by smlewis Mon, 2014-04-21 06:47 |
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Some wrong with the flag "-l" for score_jd2.linuxgccrelease by lanselibai » Mon, 2014-09-29 02:29 |
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3,290 |
by lanselibai Tue, 2014-09-30 02:28 |
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Space Swap!!! by jrcf » Sun, 2016-02-14 11:43 |
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1,615 |
by jrcf Mon, 2016-02-15 17:59 |
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Specifying resfile in rosetta scripts by johnnytam100 » Mon, 2019-03-18 02:19 |
4 |
1,576 |
by rmoretti Fri, 2019-03-29 09:30 |
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Speed problem when running RosettaLigand ligand docking by Nicole Deng » Tue, 2019-10-08 04:29 |
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962 |
by Nicole Deng Tue, 2020-11-03 19:07 |
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SPLINE EPR_DISTANCE Constraint Error by mmw88 » Tue, 2018-09-18 14:39 |
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1,125 |
by rmoretti Thu, 2018-09-20 09:19 |
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splitfile.py by saladi » Fri, 2018-03-30 10:31 |
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897 |
by rmoretti Tue, 2018-04-10 15:34 |
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Standalone alanine scanning protocol by exchhattu » Thu, 2011-10-13 19:40 |
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4,476 |
by smlewis Mon, 2014-04-21 06:47 |
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std::bad_alloc error after changing .xml script? by chrisHKL » Wed, 2020-03-04 11:44 |
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1,672 |
by jadolfbr Thu, 2020-03-05 07:02 |
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Steric clashes in RNA minimization by brianmlee » Tue, 2014-11-18 18:29 |
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4,127 |
by brianmlee Mon, 2014-11-24 19:40 |
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strange effect in: SymDock.linuxgccrelease by ast » Tue, 2013-06-11 11:05 |
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2,661 |
by ast Mon, 2014-04-21 06:48 |
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Strong bias in sampling observed in RosettaDock by chenna » Thu, 2020-08-27 22:23 |
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376 |
by ssrb Sun, 2020-09-20 15:50 |
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Structure determination combining X-ray diffraction data and NMR chemical shift by MajorID » Mon, 2011-10-17 19:55 |
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2,722 |
by rmoretti Mon, 2014-04-21 06:47 |
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structure prediction by MA » Wed, 2018-09-05 00:50 |
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455 |
by MA Wed, 2018-09-05 00:50 |
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Structure prediction using true distance and angle constraint by maruhuang » Wed, 2019-08-21 02:29 |
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922 |
by maruhuang Thu, 2019-09-26 18:52 |
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submit_NGK.py not creating output files by nkato2 » Wed, 2013-08-28 23:37 |
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1,817 |
by rmoretti Mon, 2014-04-21 06:48 |
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Successful RosettaCM? by jlawrie » Wed, 2020-08-19 06:53 |
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455 |
by jlawrie Thu, 2020-08-20 11:00 |
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suppress pdb output from backrub by attesor » Mon, 2014-10-27 11:16 |
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4,487 |
by rmoretti Mon, 2014-11-03 15:47 |
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Surface accessible residue as a constraint. by arthuc01 » Fri, 2012-03-09 23:27 |
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1,568 |
by smlewis Mon, 2014-04-21 06:47 |
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Surface Docking Application Crash by dkozuch » Sat, 2017-09-02 18:32 |
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4,664 |
by Anpu Tue, 2018-09-25 19:06 |
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Surface Docking Crash (continued) by dkozuch » Tue, 2017-09-12 06:18 |
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862 |
by rmoretti Tue, 2017-10-10 10:08 |
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SymDock for docking only the ligand? by ast » Mon, 2013-06-17 09:53 |
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3,742 |
by rmoretti Mon, 2014-04-21 06:48 |
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SymDock with constraints by felipet » Thu, 2015-05-14 09:01 |
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2,188 |
by rmoretti Mon, 2015-05-25 11:49 |
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Symmetric assembly and output reconstruction by felipet » Wed, 2014-07-02 10:23 |
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906 |
by felipet Wed, 2014-07-02 10:23 |
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symmetric design in the presence of a nonsymmetric ligand by msardejani » Fri, 2016-09-30 15:17 |
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3,852 |
by msardejani Sat, 2016-10-01 12:55 |
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symmetric docking and constraints by ytao » Thu, 2013-05-02 12:08 |
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5,623 |
by attesor Wed, 2015-10-21 13:53 |
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Symmetric docking with multiple chains as asymmetric unit by sarah29 » Tue, 2013-11-05 20:24 |
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2,375 |
by rmoretti Mon, 2014-04-21 06:48 |
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symmetric fixbb design with design_hpatch by sdh_h » Sat, 2013-02-02 01:48 |
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1,948 |
by ronj Mon, 2014-04-21 06:47 |
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Symmetric Minimization by aroop » Mon, 2012-12-17 11:45 |
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3,000 |
by aroop Mon, 2014-04-21 06:47 |
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symmetrical membrane modeling by rlwoltz » Tue, 2013-10-29 03:41 |
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4,151 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Symmetry definition for apolar helix by vanrooyenjason » Tue, 2016-01-05 05:20 |
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2,235 |
by rmoretti Fri, 2016-04-29 09:21 |
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Symmetry definition for coiled-coil dimer and trimer by kszczepaniak » Fri, 2013-10-11 05:33 |
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4,551 |
by kszczepaniak Mon, 2014-04-21 06:48 |
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Symmetry Docking and Clustering with Ligands by skovacs » Wed, 2012-03-07 16:46 |
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8,541 |
by Anonymous Mon, 2014-04-21 06:47 |
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Symmetry mode in Remodel for N-terminal extension by yvonne.chan2 » Mon, 2019-11-04 13:41 |
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500 |
by yvonne.chan2 Mon, 2019-11-04 13:41 |
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Symmetry-aware Backrub? by gamacy » Fri, 2014-11-14 02:18 |
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1,377 |
by rmoretti Tue, 2014-11-18 09:10 |
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Syntax for python-based (.py) command line on cluster by lanselibai » Fri, 2014-11-14 09:32 |
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4,042 |
by lanselibai Thu, 2014-11-20 02:15 |
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Syntax for relax.linuxgccrelease by lanselibai » Wed, 2014-09-24 04:34 |
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16,323 |
by lanselibai Tue, 2014-12-02 09:46 |
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Syntax for the alignment file in "minirosetta comparative modeling" by lanselibai » Thu, 2014-10-16 15:29 |
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3,213 |
by lanselibai Thu, 2014-10-23 03:26 |
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Syntax to build a silent file by lanselibai » Fri, 2014-09-26 09:13 |
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6,805 |
by lanselibai Tue, 2014-09-30 03:45 |
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Syntax to extract PDB files from a silent file by lanselibai » Fri, 2014-09-26 13:48 |
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2,827 |
by lanselibai Fri, 2014-09-26 14:58 |
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Template/Input length mismatch error during RosettaCM by marinok » Mon, 2020-05-04 13:12 |
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807 |
by marinok Mon, 2020-05-11 12:48 |
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terminal amino acids of gap has incomplete valency by malkeet.singh » Wed, 2017-11-29 05:20 |
6 |
2,227 |
by rmoretti Fri, 2017-12-01 12:05 |
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the ddg of mutant is same as the wt by deepanshuiitb » Wed, 2015-03-04 11:56 |
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4,485 |
by jadolfbr Tue, 2015-04-07 10:50 |
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The difference between the H1 regions of modeled camelid antibody and the crystal structure. by Sunyp_IM » Sun, 2020-06-07 02:34 |
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423 |
by nannemdp Sun, 2020-06-07 08:01 |
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the extracted pdb file by benniu2004 » Fri, 2013-01-04 17:55 |
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9,658 |
by benniu2004 Mon, 2014-04-21 06:47 |
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the flexpepdock refinement and ab-initio by tfliu » Mon, 2013-12-23 19:17 |
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4,392 |
by tfliu Mon, 2014-04-21 06:48 |
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the meaning of total_score in docking by libai2098 » Mon, 2011-03-21 05:46 |
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3,365 |
by libai2098 Mon, 2014-04-21 06:47 |
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The problems on pdb renumbering by Sunyp_IM » Sun, 2017-08-20 06:39 |
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1,325 |
by Sunyp_IM Sun, 2017-08-20 06:39 |
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The question about ligand score function by asbelx » Sun, 2018-06-17 02:07 |
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1,500 |
by asbelx Mon, 2018-06-18 22:34 |
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The question of ligand docking with constraints by asbelx » Mon, 2018-06-11 09:39 |
3 |
1,601 |
by rmoretti Thu, 2018-06-28 12:58 |
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The relax qustion of Rosetta VIP by asbelx » Mon, 2019-06-10 07:52 |
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583 |
by rmoretti Mon, 2019-06-24 14:42 |
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The usage of antibody_H3.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 22:50 |
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604 |
by Sunyp_IM Thu, 2020-06-04 08:20 |
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The Usage of motifgraft by Sunyp_IM » Sun, 2017-11-19 20:22 |
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1,704 |
by Sunyp_IM Mon, 2017-11-20 19:20 |
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Thread target sequence by duz » Thu, 2021-04-01 10:09 |
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97 |
by nannemdp Thu, 2021-04-01 14:39 |
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Threading a sequence onto a template with ligands/metal ions included by ajkal » Wed, 2017-04-19 11:53 |
3 |
2,078 |
by ahmadkhalifa Sun, 2019-03-31 23:27 |
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Threading with Ligand by ekwan » Thu, 2018-12-06 15:10 |
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698 |
by rmoretti Fri, 2019-03-29 13:21 |
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to create the template pdb file by benniu2004 » Sat, 2012-12-29 23:04 |
8 |
5,668 |
by benniu2004 Mon, 2014-04-21 06:47 |
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too many constraints result in no output pose by Yao Wu » Sun, 2012-11-18 23:45 |
5 |
4,384 |
by smlewis Mon, 2014-04-21 06:47 |
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Total score problems with high-res ddg_monomer by jklesmith » Tue, 2015-03-10 15:54 |
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2,309 |
by jennifer Fri, 2015-03-27 05:56 |
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Translate mover chain X doesnot exist. by surya » Thu, 2020-07-09 08:36 |
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1,060 |
by rmoretti Tue, 2020-07-14 10:54 |
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Transmembrane helix fold-and-dock? by sarah_b » Tue, 2020-05-12 02:09 |
3 |
751 |
by jkleman Tue, 2020-05-19 15:02 |
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Trouble enforcing a disulfide in loop building by chelsell » Sun, 2015-05-10 16:31 |
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2,408 |
by chelsell Wed, 2015-05-27 14:36 |
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trouble in floppytail modelling by ytao » Thu, 2013-06-27 13:15 |
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1,741 |
by ytao Mon, 2014-04-21 06:48 |
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Trouble running Enzyme Design application by danaitop » Thu, 2016-08-11 13:34 |
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1,650 |
by rmoretti Mon, 2016-09-05 11:10 |
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Trouble running MPI docking protocol, please help! by Rob_Barringer » Tue, 2020-08-18 06:40 |
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627 |
by Rob_Barringer Fri, 2020-09-25 05:45 |
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Two questions on the RosettaScripts flexbb-interfacedesign.xml by johnnytam100 » Fri, 2019-03-15 04:54 |
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736 |
by rmoretti Fri, 2019-03-29 09:58 |
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Unable to run Rosetta LoopModeling application by BDBorrillo » Tue, 2011-07-19 14:06 |
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3,969 |
by BDBorrillo Mon, 2014-04-21 06:47 |
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Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking) by snorp » Mon, 2014-04-14 13:01 |
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2,816 |
by jadolfbr Mon, 2014-05-12 10:41 |
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Unable to understand fragment picking tutorial points. by Danielsebas » Thu, 2019-09-05 03:44 |
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1,062 |
by danpf Fri, 2019-09-06 11:29 |
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Undesirable behaviour of PoseFromSFRBuilder regarding Hydrogen atoms by Corvin » Wed, 2020-12-02 04:00 |
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219 |
by rmoretti Wed, 2020-12-02 07:27 |
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Unexpected Error with RosettaCM - by terry » Fri, 2019-02-22 14:26 |
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1,867 |
by rmoretti Fri, 2019-03-29 12:25 |
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UnfoldedStateEnergyCalculator MPI Error by colin.walsh.brown » Mon, 2017-11-13 09:43 |
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979 |
by smlewis Mon, 2017-11-13 10:43 |
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Up to date Vall database by JadAbbass » Sat, 2013-06-29 10:35 |
3 |
4,081 |
by rmoretti Tue, 2017-06-20 09:02 |
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usage of score3 by Run » Sat, 2013-09-28 02:06 |
16 |
11,646 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Usage of the TaskOperations "RestrictToCDRsAndNeighbors" by johnnytam100 » Wed, 2019-04-10 02:58 |
1 |
690 |
by rmoretti Wed, 2019-07-10 10:10 |
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Use "loopmodel.linuxgccrelease" CCD to build missing residue positions by lanselibai » Sun, 2014-10-12 09:00 |
2 |
2,371 |
by lanselibai Mon, 2014-10-13 10:10 |
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Use membrane or non-membrane weights in RosettaCM for a hexon in virus capsid? by lanselibai » Sat, 2020-04-11 02:10 |
0 |
345 |
by lanselibai Sat, 2020-04-11 02:10 |
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Use NMR ensemble in protein-protein docking? by cossio » Sun, 2015-09-13 07:57 |
2 |
1,991 |
by cossio Tue, 2015-09-15 12:48 |
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Using abinition to predict a new (previously unsolved) structure. by ac.research » Mon, 2017-01-09 00:59 |
0 |
800 |
by ac.research Mon, 2017-01-09 00:59 |
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using DARC in rosetta by syntekabio2019 » Thu, 2019-12-12 01:27 |
0 |
435 |
by syntekabio2019 Thu, 2019-12-12 01:27 |
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Using different number of 9-mers (UPDATED) by JadAbbass » Mon, 2017-08-28 07:20 |
1 |
1,067 |
by rmoretti Mon, 2017-09-04 10:33 |
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Using MoveMap within Relax Application? by m_grisewood » Mon, 2012-08-13 12:21 |
5 |
5,101 |
by m_grisewood Mon, 2014-04-21 06:47 |
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using piper-flexpepdock by syntekabio2019 » Thu, 2019-12-12 01:22 |
0 |
470 |
by syntekabio2019 Thu, 2019-12-12 01:22 |
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Using residue patches in AbinitioRelax by kent » Fri, 2018-11-02 11:19 |
1 |
892 |
by rmoretti Wed, 2018-11-21 15:40 |
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Using Rmsd RosettaScripts filter with alignment files by bjharris » Sun, 2020-11-08 15:51 |
1 |
214 |
by rmoretti Sun, 2020-11-08 18:56 |
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Using Rosetta Docking for nucleic acids by Adrien Guilhot » Thu, 2011-04-28 06:16 |
3 |
3,711 |
by Adrien Guilhot Mon, 2014-04-21 06:47 |
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using Rosetta to compute pH dependent binding? by JuliusSu » Sun, 2014-06-15 20:28 |
3 |
2,919 |
by rmoretti Tue, 2014-06-17 08:51 |
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variable length fragments for Ab initio by attesor » Wed, 2015-07-01 06:13 |
7 |
4,592 |
by rmoretti Tue, 2015-08-18 16:47 |
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very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
2 |
1,945 |
by attesor Tue, 2015-11-17 07:36 |
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VH-VL Orientation in antibody by sujigeorge1979 » Mon, 2019-06-17 01:23 |
1 |
662 |
by jeliazkov Mon, 2019-06-17 06:03 |
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wallpaper symmetry definition file by aaj » Fri, 2016-02-26 08:40 |
0 |
869 |
by aaj Fri, 2016-02-26 08:40 |
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Warning messages in Interface analyzer output by Pernille » Wed, 2015-03-25 00:53 |
4 |
2,977 |
by rmoretti Tue, 2015-03-31 08:20 |
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