You are here

Rosetta 3 - Applications

Topic / Topic startersort descending Replies Views Last post
Normal topic Side-chain grafting at the fixed protein and position
by Kazu » Wed, 2020-05-20 08:49
0
237 by Kazu
Wed, 2020-05-20 08:49
Normal topic Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB"
by brspurri » Fri, 2017-03-24 10:52
3
2,279 by brspurri
Fri, 2017-03-24 11:35
Normal topic Single Strand DNA (ssDNA) 3D structure prediction
by mkoohim » Fri, 2012-04-06 00:52
4
11,327 by smlewis
Mon, 2014-04-21 06:47
Normal topic SnugDock - What protocol should I use?
by dfcoelho » Tue, 2018-11-27 07:32
8
2,983 by dfcoelho
Wed, 2018-11-28 08:07
Normal topic Snugdock+ensembledock usage
by Anouk » Mon, 2014-09-22 08:09
1
2,057 by jadolfbr
Mon, 2014-10-20 13:42
Normal topic SnugDocking a VHH:antigen complex possible?
by David Weis » Thu, 2017-02-16 05:57
7
3,501 by rmoretti
Thu, 2017-07-06 13:00
Normal topic Snugdock_error
by luicui » Thu, 2017-02-09 21:06
1
951 by smlewis
Thu, 2017-02-09 21:50
Normal topic Snugdock_input
by luicui » Wed, 2017-01-18 16:48
5
2,424 by smlewis
Fri, 2017-01-20 08:14
Hot topic some application troubles when using resfile flag
by chenchaozhao » Tue, 2011-04-05 00:05
24
17,684 by smlewis
Mon, 2014-04-21 06:47
Normal topic Some wrong with the flag "-l" for score_jd2.linuxgccrelease
by lanselibai » Mon, 2014-09-29 02:29
2
3,290 by lanselibai
Tue, 2014-09-30 02:28
Normal topic Space Swap!!!
by jrcf » Sun, 2016-02-14 11:43
2
1,615 by jrcf
Mon, 2016-02-15 17:59
Normal topic Specifying resfile in rosetta scripts
by johnnytam100 » Mon, 2019-03-18 02:19
4
1,576 by rmoretti
Fri, 2019-03-29 09:30
Normal topic Speed problem when running RosettaLigand ligand docking
by Nicole Deng » Tue, 2019-10-08 04:29
2
962 by Nicole Deng
Tue, 2020-11-03 19:07
Normal topic SPLINE EPR_DISTANCE Constraint Error
by mmw88 » Tue, 2018-09-18 14:39
2
1,125 by rmoretti
Thu, 2018-09-20 09:19
Normal topic splitfile.py
by saladi » Fri, 2018-03-30 10:31
1
897 by rmoretti
Tue, 2018-04-10 15:34
Normal topic Standalone alanine scanning protocol
by exchhattu » Thu, 2011-10-13 19:40
1
4,476 by smlewis
Mon, 2014-04-21 06:47
Normal topic std::bad_alloc error after changing .xml script?
by chrisHKL » Wed, 2020-03-04 11:44
10
1,672 by jadolfbr
Thu, 2020-03-05 07:02
Normal topic Steric clashes in RNA minimization
by brianmlee » Tue, 2014-11-18 18:29
5
4,127 by brianmlee
Mon, 2014-11-24 19:40
Normal topic strange effect in: SymDock.linuxgccrelease
by ast » Tue, 2013-06-11 11:05
3
2,661 by ast
Mon, 2014-04-21 06:48
Normal topic Strong bias in sampling observed in RosettaDock
by chenna » Thu, 2020-08-27 22:23
1
376 by ssrb
Sun, 2020-09-20 15:50
Normal topic Structure determination combining X-ray diffraction data and NMR chemical shift
by MajorID » Mon, 2011-10-17 19:55
2
2,722 by rmoretti
Mon, 2014-04-21 06:47
Normal topic structure prediction
by MA » Wed, 2018-09-05 00:50
0
455 by MA
Wed, 2018-09-05 00:50
Normal topic Structure prediction using true distance and angle constraint
by maruhuang » Wed, 2019-08-21 02:29
4
922 by maruhuang
Thu, 2019-09-26 18:52
Normal topic submit_NGK.py not creating output files
by nkato2 » Wed, 2013-08-28 23:37
1
1,817 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Successful RosettaCM?
by jlawrie » Wed, 2020-08-19 06:53
2
455 by jlawrie
Thu, 2020-08-20 11:00
Normal topic suppress pdb output from backrub
by attesor » Mon, 2014-10-27 11:16
7
4,487 by rmoretti
Mon, 2014-11-03 15:47
Normal topic Surface accessible residue as a constraint.
by arthuc01 » Fri, 2012-03-09 23:27
1
1,568 by smlewis
Mon, 2014-04-21 06:47
Normal topic Surface Docking Application Crash
by dkozuch » Sat, 2017-09-02 18:32
12
4,664 by Anpu
Tue, 2018-09-25 19:06
Normal topic Surface Docking Crash (continued)
by dkozuch » Tue, 2017-09-12 06:18
1
862 by rmoretti
Tue, 2017-10-10 10:08
Normal topic SymDock for docking only the ligand?
by ast » Mon, 2013-06-17 09:53
4
3,742 by rmoretti
Mon, 2014-04-21 06:48
Normal topic SymDock with constraints
by felipet » Thu, 2015-05-14 09:01
1
2,188 by rmoretti
Mon, 2015-05-25 11:49
Normal topic Symmetric assembly and output reconstruction
by felipet » Wed, 2014-07-02 10:23
0
906 by felipet
Wed, 2014-07-02 10:23
Normal topic symmetric design in the presence of a nonsymmetric ligand
by msardejani » Fri, 2016-09-30 15:17
6
3,852 by msardejani
Sat, 2016-10-01 12:55
Normal topic symmetric docking and constraints
by ytao » Thu, 2013-05-02 12:08
5
5,623 by attesor
Wed, 2015-10-21 13:53
Normal topic Symmetric docking with multiple chains as asymmetric unit
by sarah29 » Tue, 2013-11-05 20:24
1
2,375 by rmoretti
Mon, 2014-04-21 06:48
Normal topic symmetric fixbb design with design_hpatch
by sdh_h » Sat, 2013-02-02 01:48
2
1,948 by ronj
Mon, 2014-04-21 06:47
Normal topic Symmetric Minimization
by aroop » Mon, 2012-12-17 11:45
5
3,000 by aroop
Mon, 2014-04-21 06:47
Normal topic symmetrical membrane modeling
by rlwoltz » Tue, 2013-10-29 03:41
5
4,151 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Symmetry definition for apolar helix
by vanrooyenjason » Tue, 2016-01-05 05:20
1
2,235 by rmoretti
Fri, 2016-04-29 09:21
Normal topic Symmetry definition for coiled-coil dimer and trimer
by kszczepaniak » Fri, 2013-10-11 05:33
2
4,551 by kszczepaniak
Mon, 2014-04-21 06:48
Normal topic Symmetry Docking and Clustering with Ligands
by skovacs » Wed, 2012-03-07 16:46
9
8,541 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Symmetry mode in Remodel for N-terminal extension
by yvonne.chan2 » Mon, 2019-11-04 13:41
0
500 by yvonne.chan2
Mon, 2019-11-04 13:41
Normal topic Symmetry-aware Backrub?
by gamacy » Fri, 2014-11-14 02:18
1
1,377 by rmoretti
Tue, 2014-11-18 09:10
Normal topic Syntax for python-based (.py) command line on cluster
by lanselibai » Fri, 2014-11-14 09:32
2
4,042 by lanselibai
Thu, 2014-11-20 02:15
Hot topic Syntax for relax.linuxgccrelease
by lanselibai » Wed, 2014-09-24 04:34
18
16,323 by lanselibai
Tue, 2014-12-02 09:46
Normal topic Syntax for the alignment file in "minirosetta comparative modeling"
by lanselibai » Thu, 2014-10-16 15:29
3
3,213 by lanselibai
Thu, 2014-10-23 03:26
Normal topic Syntax to build a silent file
by lanselibai » Fri, 2014-09-26 09:13
8
6,805 by lanselibai
Tue, 2014-09-30 03:45
Normal topic Syntax to extract PDB files from a silent file
by lanselibai » Fri, 2014-09-26 13:48
1
2,827 by lanselibai
Fri, 2014-09-26 14:58
Normal topic Template/Input length mismatch error during RosettaCM
by marinok » Mon, 2020-05-04 13:12
4
807 by marinok
Mon, 2020-05-11 12:48
Normal topic terminal amino acids of gap has incomplete valency
by malkeet.singh » Wed, 2017-11-29 05:20
6
2,227 by rmoretti
Fri, 2017-12-01 12:05
Normal topic the ddg of mutant is same as the wt
by deepanshuiitb » Wed, 2015-03-04 11:56
6
4,485 by jadolfbr
Tue, 2015-04-07 10:50
Normal topic The difference between the H1 regions of modeled camelid antibody and the crystal structure.
by Sunyp_IM » Sun, 2020-06-07 02:34
1
423 by nannemdp
Sun, 2020-06-07 08:01
Normal topic the extracted pdb file
by benniu2004 » Fri, 2013-01-04 17:55
12
9,658 by benniu2004
Mon, 2014-04-21 06:47
Normal topic the flexpepdock refinement and ab-initio
by tfliu » Mon, 2013-12-23 19:17
6
4,392 by tfliu
Mon, 2014-04-21 06:48
Normal topic the meaning of total_score in docking
by libai2098 » Mon, 2011-03-21 05:46
2
3,365 by libai2098
Mon, 2014-04-21 06:47
Normal topic The problems on pdb renumbering
by Sunyp_IM » Sun, 2017-08-20 06:39
0
1,325 by Sunyp_IM
Sun, 2017-08-20 06:39
Normal topic The question about ligand score function
by asbelx » Sun, 2018-06-17 02:07
2
1,500 by asbelx
Mon, 2018-06-18 22:34
Normal topic The question of ligand docking with constraints
by asbelx » Mon, 2018-06-11 09:39
3
1,601 by rmoretti
Thu, 2018-06-28 12:58
Normal topic The relax qustion of Rosetta VIP
by asbelx » Mon, 2019-06-10 07:52
1
583 by rmoretti
Mon, 2019-06-24 14:42
Normal topic The usage of antibody_H3.linuxgccrelease
by Sunyp_IM » Thu, 2020-05-28 22:50
2
604 by Sunyp_IM
Thu, 2020-06-04 08:20
Normal topic The Usage of motifgraft
by Sunyp_IM » Sun, 2017-11-19 20:22
2
1,704 by Sunyp_IM
Mon, 2017-11-20 19:20
Normal topic Thread target sequence
by duz » Thu, 2021-04-01 10:09
3
97 by nannemdp
Thu, 2021-04-01 14:39
Normal topic Threading a sequence onto a template with ligands/metal ions included
by ajkal » Wed, 2017-04-19 11:53
3
2,078 by ahmadkhalifa
Sun, 2019-03-31 23:27
Normal topic Threading with Ligand
by ekwan » Thu, 2018-12-06 15:10
1
698 by rmoretti
Fri, 2019-03-29 13:21
Normal topic to create the template pdb file
by benniu2004 » Sat, 2012-12-29 23:04
8
5,668 by benniu2004
Mon, 2014-04-21 06:47
Normal topic too many constraints result in no output pose
by Yao Wu » Sun, 2012-11-18 23:45
5
4,384 by smlewis
Mon, 2014-04-21 06:47
Normal topic Total score problems with high-res ddg_monomer
by jklesmith » Tue, 2015-03-10 15:54
2
2,309 by jennifer
Fri, 2015-03-27 05:56
Normal topic Translate mover chain X doesnot exist.
by surya » Thu, 2020-07-09 08:36
6
1,060 by rmoretti
Tue, 2020-07-14 10:54
Normal topic Transmembrane helix fold-and-dock?
by sarah_b » Tue, 2020-05-12 02:09
3
751 by jkleman
Tue, 2020-05-19 15:02
Normal topic Trouble enforcing a disulfide in loop building
by chelsell » Sun, 2015-05-10 16:31
2
2,408 by chelsell
Wed, 2015-05-27 14:36
Normal topic trouble in floppytail modelling
by ytao » Thu, 2013-06-27 13:15
1
1,741 by ytao
Mon, 2014-04-21 06:48
Normal topic Trouble running Enzyme Design application
by danaitop » Thu, 2016-08-11 13:34
2
1,650 by rmoretti
Mon, 2016-09-05 11:10
Normal topic Trouble running MPI docking protocol, please help!
by Rob_Barringer » Tue, 2020-08-18 06:40
2
627 by Rob_Barringer
Fri, 2020-09-25 05:45
Normal topic Two questions on the RosettaScripts flexbb-interfacedesign.xml
by johnnytam100 » Fri, 2019-03-15 04:54
1
736 by rmoretti
Fri, 2019-03-29 09:58
Normal topic Unable to run Rosetta LoopModeling application
by BDBorrillo » Tue, 2011-07-19 14:06
2
3,969 by BDBorrillo
Mon, 2014-04-21 06:47
Normal topic Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking)
by snorp » Mon, 2014-04-14 13:01
2
2,816 by jadolfbr
Mon, 2014-05-12 10:41
Normal topic Unable to understand fragment picking tutorial points.
by Danielsebas » Thu, 2019-09-05 03:44
4
1,062 by danpf
Fri, 2019-09-06 11:29
Normal topic Undesirable behaviour of PoseFromSFRBuilder regarding Hydrogen atoms
by Corvin » Wed, 2020-12-02 04:00
1
219 by rmoretti
Wed, 2020-12-02 07:27
Normal topic Unexpected Error with RosettaCM -
by terry » Fri, 2019-02-22 14:26
1
1,867 by rmoretti
Fri, 2019-03-29 12:25
Normal topic UnfoldedStateEnergyCalculator MPI Error
by colin.walsh.brown » Mon, 2017-11-13 09:43
1
979 by smlewis
Mon, 2017-11-13 10:43
Normal topic Up to date Vall database
by JadAbbass » Sat, 2013-06-29 10:35
3
4,081 by rmoretti
Tue, 2017-06-20 09:02
Hot topic usage of score3
by Run » Sat, 2013-09-28 02:06
16
11,646 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Usage of the TaskOperations "RestrictToCDRsAndNeighbors"
by johnnytam100 » Wed, 2019-04-10 02:58
1
690 by rmoretti
Wed, 2019-07-10 10:10
Normal topic Use "loopmodel.linuxgccrelease" CCD to build missing residue positions
by lanselibai » Sun, 2014-10-12 09:00
2
2,371 by lanselibai
Mon, 2014-10-13 10:10
Normal topic Use membrane or non-membrane weights in RosettaCM for a hexon in virus capsid?
by lanselibai » Sat, 2020-04-11 02:10
0
345 by lanselibai
Sat, 2020-04-11 02:10
Normal topic Use NMR ensemble in protein-protein docking?
by cossio » Sun, 2015-09-13 07:57
2
1,991 by cossio
Tue, 2015-09-15 12:48
Normal topic Using abinition to predict a new (previously unsolved) structure.
by ac.research » Mon, 2017-01-09 00:59
0
800 by ac.research
Mon, 2017-01-09 00:59
Normal topic using DARC in rosetta
by syntekabio2019 » Thu, 2019-12-12 01:27
0
435 by syntekabio2019
Thu, 2019-12-12 01:27
Normal topic Using different number of 9-mers (UPDATED)
by JadAbbass » Mon, 2017-08-28 07:20
1
1,067 by rmoretti
Mon, 2017-09-04 10:33
Normal topic Using MoveMap within Relax Application?
by m_grisewood » Mon, 2012-08-13 12:21
5
5,101 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic using piper-flexpepdock
by syntekabio2019 » Thu, 2019-12-12 01:22
0
470 by syntekabio2019
Thu, 2019-12-12 01:22
Normal topic Using residue patches in AbinitioRelax
by kent » Fri, 2018-11-02 11:19
1
892 by rmoretti
Wed, 2018-11-21 15:40
Normal topic Using Rmsd RosettaScripts filter with alignment files
by bjharris » Sun, 2020-11-08 15:51
1
214 by rmoretti
Sun, 2020-11-08 18:56
Normal topic Using Rosetta Docking for nucleic acids
by Adrien Guilhot » Thu, 2011-04-28 06:16
3
3,711 by Adrien Guilhot
Mon, 2014-04-21 06:47
Normal topic using Rosetta to compute pH dependent binding?
by JuliusSu » Sun, 2014-06-15 20:28
3
2,919 by rmoretti
Tue, 2014-06-17 08:51
Normal topic variable length fragments for Ab initio
by attesor » Wed, 2015-07-01 06:13
7
4,592 by rmoretti
Tue, 2015-08-18 16:47
Normal topic very good I_sc values (if not too good)
by attesor » Tue, 2015-11-03 03:30
2
1,945 by attesor
Tue, 2015-11-17 07:36
Normal topic VH-VL Orientation in antibody
by sujigeorge1979 » Mon, 2019-06-17 01:23
1
662 by jeliazkov
Mon, 2019-06-17 06:03
Normal topic wallpaper symmetry definition file
by aaj » Fri, 2016-02-26 08:40
0
869 by aaj
Fri, 2016-02-26 08:40
Normal topic Warning messages in Interface analyzer output
by Pernille » Wed, 2015-03-25 00:53
4
2,977 by rmoretti
Tue, 2015-03-31 08:20
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - Applications