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Rosetta 3 - General
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Biopython error in mac os x by vinodh » Tue, 2012-06-12 12:23 |
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4,315 |
by jadolfbr Mon, 2014-04-21 06:47 |
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PDB HETATM by hwillis » Thu, 2009-08-06 12:03 |
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4,312 |
by smlewis Mon, 2014-04-21 06:47 |
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running Rosetta locally using commands generated by the Robetta web server by cneale » Sat, 2014-03-15 11:48 |
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4,310 |
by cneale Fri, 2014-03-21 18:13 |
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Rosetta dock parallel by mahajanr » Tue, 2010-06-01 16:04 |
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4,305 |
by smlewis Mon, 2014-04-21 06:47 |
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Modeling protonated histidine by SenyorDrew » Mon, 2016-07-18 07:34 |
3 |
4,305 |
by matteoferla Sat, 2017-08-05 07:18 |
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Calling a Rosetta xml script in a Python script gives fail to validate error by ahmadkhalifa » Tue, 2018-03-06 08:00 |
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4,305 |
by rmoretti Mon, 2018-03-19 12:35 |
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how to keep native structure when do loop modeling by zlni » Sun, 2009-05-03 10:12 |
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4,299 |
by zlni Mon, 2014-04-21 06:47 |
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Does Rosetta have homology modeling protocol? by SunH » Thu, 2010-11-04 07:36 |
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4,298 |
by smlewis Mon, 2014-04-21 06:47 |
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Radius of Gyration by ctaylor » Mon, 2009-09-21 12:45 |
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4,297 |
by ctaylor Mon, 2014-04-21 06:47 |
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I used mpirun/mpiexec and it runs same job 32times by leygkn » Mon, 2020-09-21 00:53 |
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4,295 |
by jadolfbr Thu, 2020-09-24 10:04 |
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Good baseline settings for side chain packing by pachecoj » Tue, 2015-01-13 19:25 |
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4,287 |
by rmoretti Wed, 2015-01-21 10:05 |
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Criteria on the calculation of Irmsd of the protein-protein interface by yzq » Tue, 2012-02-21 07:06 |
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4,286 |
by smlewis Mon, 2014-04-21 06:47 |
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ligand docking with rosetta_scripts.linuxgccrelease by xpzhang » Thu, 2015-02-26 10:57 |
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4,286 |
by rmoretti Mon, 2015-03-30 16:58 |
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Loop extensions at the end of chains by japgar » Mon, 2010-07-26 12:35 |
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4,278 |
by japgar Mon, 2014-04-21 06:47 |
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AbinitioRelax with restraints/constraints by jtmacd » Mon, 2011-07-11 07:07 |
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4,275 |
by jtmacd Mon, 2014-04-21 06:47 |
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pepspec aplication - segmentation fault by tiagogomes89 » Fri, 2011-09-02 11:18 |
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4,264 |
by smlewis Mon, 2014-04-21 06:47 |
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loop modeling by MRH » Thu, 2013-08-22 23:19 |
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4,264 |
by MRH Mon, 2014-04-21 06:48 |
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[Mover] is not known to the MoverFactory by Jhreed » Fri, 2016-08-05 12:23 |
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4,261 |
by msardejani Sun, 2016-08-07 17:49 |
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postive score models from AbinitioRelax by xpzhang » Fri, 2012-06-22 12:34 |
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4,247 |
by smlewis Mon, 2014-04-21 06:47 |
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membrane protein packing prediction by djpittdj » Fri, 2012-01-13 08:55 |
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4,229 |
by pardave Mon, 2014-04-21 06:47 |
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Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released! by xujc » Wed, 2012-10-24 11:15 |
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4,224 |
by xujc Mon, 2014-04-21 06:47 |
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Antibody Homology Modeling - Antibody vs. Antibody_legacy by cannond » Tue, 2017-02-14 05:53 |
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4,208 |
by cannond Wed, 2017-03-01 08:05 |
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how to output a structure when scoring it? by tianbu » Tue, 2012-07-31 09:38 |
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4,205 |
by rmoretti Mon, 2014-04-21 06:47 |
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Converting charmm parameter files (.par) by ajasja » Mon, 2014-09-29 07:19 |
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4,203 |
by jcminerlanl Tue, 2017-12-19 14:03 |
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how to use rosettadesign to do mutations on protein structure by lqzhang » Thu, 2010-03-04 07:43 |
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4,183 |
by vanita Mon, 2014-04-21 06:47 |
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Rescoring protein docking decoys to get Irms by lj269 » Thu, 2014-10-23 13:23 |
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4,177 |
by rmoretti Wed, 2014-10-29 14:30 |
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Protein folding using Monte Carlo derived techniques and implicit solvation by hefeweizen » Tue, 2013-12-10 06:30 |
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4,177 |
by rmoretti Mon, 2014-04-21 06:48 |
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Multiprocessing and running jobs on server using slurm by ahmadkhalifa » Mon, 2018-04-09 10:59 |
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4,172 |
by rmoretti Tue, 2018-04-10 16:00 |
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selecting pivot_residue in Backrub for ensemble generation by rohi » Fri, 2020-08-07 15:41 |
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4,156 |
by matteoferla Tue, 2020-08-11 10:00 |
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Problem creating pNNMAKE.gnu by anirbanzz » Sat, 2010-04-17 02:14 |
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4,152 |
by monica0569 Mon, 2014-04-21 06:47 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Thu, 2016-06-30 11:06 |
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4,148 |
by rmoretti Tue, 2016-07-12 08:18 |
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manually changing fixbb residue ref energies by jtmacd » Wed, 2009-11-25 08:43 |
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4,142 |
by jtmacd Mon, 2014-04-21 06:47 |
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Error when using RabD with a nanobody. by zhangying1990 » Mon, 2018-12-17 04:40 |
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4,142 |
by jadolfbr Mon, 2019-01-28 08:46 |
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Patches for post-translational modifications by ltrabuco » Tue, 2011-02-22 01:00 |
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4,134 |
by ltrabuco Mon, 2014-04-21 06:47 |
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demos/public/ideal_proteins Segmentation fault by coomteng@gmail.com » Wed, 2018-03-07 00:15 |
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4,118 |
by rmoretti Thu, 2018-03-08 07:46 |
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How to allow rosetta to recognize the ASP and protonated ASP? by Jeffrey_Chen » Mon, 2014-03-24 20:34 |
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4,101 |
by Jeffrey_Chen Tue, 2014-03-25 23:06 |
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Problems with output control by Sunyp_IM » Thu, 2017-06-22 15:30 |
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4,091 |
by rmoretti Wed, 2017-06-28 01:33 |
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RMS in Score Application by brspurri » Thu, 2011-12-29 09:19 |
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4,082 |
by smlewis Mon, 2014-04-21 06:47 |
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Adding noncanonical amino acid (PCA) to Rosetta 3 by JuliusSu » Fri, 2014-08-01 11:23 |
2 |
4,069 |
by JuliusSu Fri, 2014-08-08 02:07 |
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Problem in 3D structure building of ss DNA aptamer by irshadbaig » Sun, 2013-11-17 20:15 |
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4,066 |
by rmoretti Mon, 2014-04-21 06:48 |
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Structure Prediction: Max Sequence Length? by jcsaborio » Tue, 2009-07-14 12:10 |
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4,065 |
by jcsaborio Mon, 2014-04-21 06:47 |
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span and frags filefor multichain transmembrane protein by zhiguang » Wed, 2016-10-26 13:28 |
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4,063 |
by zhiguang Tue, 2016-11-15 12:27 |
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Why I have the different result with the same initial condition? by mikelin » Sat, 2011-06-04 11:35 |
2 |
4,022 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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spline constraint by jadolfbr » Mon, 2012-06-25 04:43 |
3 |
4,008 |
by smlewis Mon, 2014-04-21 06:47 |
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loop design by varma » Sun, 2012-11-04 21:25 |
2 |
4,007 |
by varma Mon, 2014-04-21 06:47 |
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RNA Parameter File by hdavis9 » Tue, 2010-07-06 11:36 |
4 |
4,004 |
by smlewis Mon, 2014-04-21 06:47 |
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Errors in scorefiles after running Design by Jhreed » Tue, 2016-03-29 10:25 |
4 |
4,002 |
by smlewis Wed, 2016-03-30 09:52 |
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Rigid Body & Flexible Minimization by Hanieh » Thu, 2014-02-06 12:37 |
2 |
3,991 |
by Hanieh Fri, 2014-02-28 12:43 |
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NC atom type [Solved] by franfdez » Tue, 2012-02-07 16:05 |
3 |
3,989 |
by franfdez Mon, 2014-04-21 06:47 |
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force point mutation with fixbb by Anonymous » Wed, 2012-06-13 09:15 |
3 |
3,980 |
by smlewis Mon, 2014-04-21 06:47 |
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Cannot use SimpleMetrics by Vedasheersh » Sun, 2018-06-10 23:38 |
5 |
3,979 |
by smlewis Tue, 2018-06-12 10:54 |
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Rosetta atoms types for enzyme design by bharat_46010 » Thu, 2011-11-10 06:01 |
2 |
3,976 |
by rmoretti Mon, 2014-04-21 06:47 |
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Energy minimization of a crystal structure with residues mutated in pymol by bharat_46010 » Wed, 2014-05-21 19:52 |
1 |
3,969 |
by rmoretti Fri, 2014-05-23 08:09 |
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score_jd2.macosclangrelease No such file or directory by ahmadkhalifa » Mon, 2017-11-27 09:26 |
3 |
3,966 |
by everyday847 Tue, 2017-11-28 13:07 |
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Error Atom_::dihedral_between_bonded_children by abiadak » Mon, 2012-07-30 06:34 |
2 |
3,965 |
by abiadak Mon, 2014-04-21 06:47 |
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Cluster gdtmm vs. rmsd by brspurri » Thu, 2012-04-19 08:19 |
2 |
3,964 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to run docking in rosetta with small molecule by ajaniharesh » Tue, 2012-02-28 03:58 |
1 |
3,957 |
by smlewis Mon, 2014-04-21 06:47 |
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loop modeling by isengupta13 » Wed, 2011-06-01 15:00 |
3 |
3,954 |
by smlewis Mon, 2014-04-21 06:47 |
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segmentation fault when using design_hpatch scoring function by rbjacob » Mon, 2018-04-09 11:05 |
5 |
3,948 |
by smlewis Wed, 2018-04-11 11:45 |
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how to keep modeling ignored ERROR? by eunwook » Sat, 2013-04-27 05:44 |
3 |
3,948 |
by eunwook Mon, 2014-04-21 06:47 |
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How to input pdb to rosetta format add "missing" residues to pdb file by zhisheng » Tue, 2011-06-07 09:51 |
1 |
3,948 |
by smlewis Mon, 2014-04-21 06:47 |
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could I add some constrain to the backbone but not completely fix it when relax? by albumns » Tue, 2010-06-29 05:43 |
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3,939 |
by smlewis Mon, 2014-04-21 06:47 |
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Fold tree error by mansi » Tue, 2010-05-18 07:43 |
2 |
3,938 |
by mansi Mon, 2014-04-21 06:47 |
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-loops:refine_repack_cycles option not accepted by loopmodel.linuxgccrelease by tsjain » Tue, 2013-02-05 18:47 |
3 |
3,917 |
by tsjain Mon, 2014-04-21 06:47 |
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calculate low-resolution total docking score for a input pdb by jasnyderjr » Fri, 2015-12-11 23:08 |
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3,913 |
by rmoretti Wed, 2015-12-16 11:22 |
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Successful installation on OpenSuse11.1 - tests? by zharmad » Thu, 2010-08-19 00:30 |
4 |
3,902 |
by zharmad Mon, 2014-04-21 06:47 |
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Quesition about Relax Mode by crysta11 » Wed, 2009-10-21 09:57 |
3 |
3,896 |
by smlewis Mon, 2014-04-21 06:47 |
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dna_denovo by frits » Fri, 2013-07-12 06:12 |
3 |
3,888 |
by frits Mon, 2014-04-21 06:48 |
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AtomPair and SPLINE by attesor » Sat, 2015-06-20 11:42 |
2 |
3,885 |
by attesor Thu, 2015-10-22 03:42 |
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Information about “membrane_highres_Menv_smooth.wts” by Groros » Sun, 2011-10-02 03:59 |
3 |
3,882 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaCM rename or swap the order of sequences in your alignment file by ahmadkhalifa » Fri, 2017-12-22 08:42 |
4 |
3,879 |
by rmoretti Mon, 2018-01-15 15:24 |
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Adding new files using rosetta classes went wrong by Jeremy1990 » Sun, 2015-04-26 01:07 |
3 |
3,879 |
by rmoretti Thu, 2015-04-30 16:09 |
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Comparison between two fragment pickers by qlj » Mon, 2013-09-02 06:34 |
3 |
3,873 |
by rmoretti Mon, 2014-04-21 06:48 |
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Basic help with Protein-DNA and Protein-Protein modeling and engineering by Robert Evans » Sat, 2013-08-17 12:21 |
2 |
3,864 |
by Robert Evans Mon, 2014-04-21 06:48 |
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The following options have been set but have not yet been used by jrcf » Fri, 2015-10-09 10:48 |
2 |
3,864 |
by jrcf Fri, 2015-10-16 10:57 |
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RosettaHoles? by kbala » Thu, 2009-07-30 16:52 |
3 |
3,861 |
by smlewis Mon, 2014-04-21 06:47 |
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error for the pose reading:TRP:NtermProteinFull:triazolamerC missing: C1 by wyb » Fri, 2017-12-01 17:50 |
3 |
3,858 |
by rmoretti Sat, 2017-12-16 12:19 |
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make_fragments by sumukh21 » Wed, 2011-02-23 09:29 |
3 |
3,849 |
by sumukh21 Mon, 2014-04-21 06:47 |
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Rosetta Holes and Packstat scoring by nick.polizzi » Fri, 2013-08-02 09:06 |
1 |
3,847 |
by rmoretti Mon, 2014-04-21 06:48 |
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"caught exception" for PDB with membrane "DUM" residues by nitroamos » Wed, 2018-05-30 08:35 |
2 |
3,845 |
by Awagner7 Tue, 2020-04-28 10:51 |
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DomainAssembly Mover with constraints (using RosettaScripts) by resiros » Wed, 2016-09-21 11:19 |
3 |
3,836 |
by rmoretti Mon, 2016-11-14 14:21 |
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Missing atoms, unable to fill in missing atoms by kwu030 » Fri, 2023-05-05 12:58 |
12 |
3,830 |
by kwu030 Thu, 2023-05-18 08:31 |
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Hbond tripped by alejandro » Mon, 2011-11-21 04:17 |
3 |
3,829 |
by alejandro Mon, 2014-04-21 06:47 |
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Error when running enzyme_design tutorial by linucks » Fri, 2017-06-30 12:26 |
4 |
3,828 |
by linucks Mon, 2017-07-03 09:50 |
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Denovo density corrupted silent file by ahmadkhalifa » Mon, 2018-04-23 07:30 |
4 |
3,824 |
by ahmadkhalifa Thu, 2018-04-26 09:11 |
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Solving van der waals clashes in a transmembrane protein model with rosetta by doranhen » Wed, 2012-12-05 00:12 |
3 |
3,819 |
by smlewis Mon, 2014-04-21 06:47 |
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Simple FoldTree Question by gipsonb » Wed, 2012-04-25 18:19 |
3 |
3,816 |
by gipsonb Mon, 2014-04-21 06:47 |
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change DOF of NH3 group in N terminus by SergeyP » Wed, 2016-02-03 02:22 |
3 |
3,796 |
by SergeyP Thu, 2016-02-04 00:07 |
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build parallel version of Rosetta by atfrank » Tue, 2009-10-06 22:33 |
2 |
3,795 |
by smlewis Mon, 2014-04-21 06:47 |
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Using mode=profile by Biokhar » Fri, 2012-07-06 00:29 |
2 |
3,792 |
by scombs Mon, 2014-04-21 06:47 |
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backrub score different from calculated score by attesor » Wed, 2014-04-09 07:34 |
3 |
3,787 |
by rmoretti Thu, 2014-04-10 07:38 |
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How to generate constraints of active sites from a pdb file of an enzyme by Albert » Sun, 2013-05-26 20:07 |
3 |
3,782 |
by jadolfbr Mon, 2014-04-21 06:47 |
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mutate residue at termini by jarek » Fri, 2013-09-13 09:24 |
2 |
3,782 |
by jarek Mon, 2014-04-21 06:48 |
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ERROR: unrecognized atomtype property VIRTUAL by harshkhare » Mon, 2011-11-14 09:40 |
3 |
3,779 |
by harshkhare Mon, 2014-04-21 06:47 |
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Library of unnatural amino acid parameters by saxen » Mon, 2017-04-17 11:08 |
1 |
3,778 |
by smlewis Tue, 2017-04-18 08:33 |
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energy units by jtmacd » Mon, 2009-07-06 10:39 |
1 |
3,772 |
by smlewis Mon, 2014-04-21 06:47 |
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Abinitio starts at the 27th amino acid by JadAbbass » Thu, 2013-08-29 05:38 |
3 |
3,751 |
by JadAbbass Mon, 2014-04-21 06:48 |
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What is "residue packing", "repacking", and so on? by cossio » Wed, 2014-12-03 08:49 |
2 |
3,733 |
by cossio Wed, 2014-12-03 14:51 |
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what option should I use if I want to use the dfire in 3.4 by Lindsay » Thu, 2012-04-12 05:19 |
3 |
3,732 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: PDB reader is ignoring atom by phanvy » Wed, 2014-04-16 17:59 |
2 |
3,731 |
by phanvy Mon, 2014-04-21 03:58 |
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