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Rosetta 3 - General

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Normal topic mode=release compile on a mac-pro , seg faults and bus errors
by dnasmith » Thu, 2010-09-09 16:56
2
1,235 by dnasmith
Mon, 2014-04-21 06:47
Normal topic all-atom refinement with Relax application
by zwenthor » Mon, 2010-02-15 22:45
2
1,329 by zwenthor
Mon, 2014-04-21 06:47
Normal topic Design with non-canonical amino acids (NCAA)
by yinasun » Mon, 2019-08-05 00:34
2
119 by matteoferla
Thu, 2019-08-22 05:39
Normal topic Can't read constraint type
by allan.ferrari » Fri, 2015-08-28 12:33
2
1,178 by allan.ferrari
Mon, 2015-09-21 21:54
Normal topic ligand dock residue selection
by Silice » Wed, 2009-08-12 08:57
2
1,231 by frichter
Mon, 2014-04-21 06:47
Normal topic cluster input_score_filter
by lj269 » Thu, 2011-09-01 15:29
2
1,526 by attesor
Fri, 2014-10-31 04:23
Normal topic Parametrisation problems
by DmitriiN » Tue, 2016-05-31 09:37
2
943 by DmitriiN
Wed, 2016-06-01 15:46
Normal topic Protein Docking Error
by ac.research » Thu, 2017-08-17 02:57
2
654 by ac.research
Fri, 2017-08-18 00:53
Normal topic Noncanonical amino acid HIP
by Victor » Fri, 2014-01-31 07:45
2
1,961 by Victor
Fri, 2014-01-31 10:41
Normal topic Why I have the different result with the same initial condition?
by mikelin » Sat, 2011-06-04 11:35
2
2,536 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic constraints
by lah435 » Sun, 2017-03-12 03:25
2
780 by lah435
Mon, 2017-04-03 19:50
Normal topic Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem
by ytao » Fri, 2013-06-28 12:13
2
1,923 by ytao
Mon, 2014-04-21 06:48
Normal topic a question about protein-ligand docking in generating 1SW2 conformers
by Ryhon Wang » Wed, 2014-05-28 22:27
2
1,772 by rmoretti
Tue, 2014-06-03 11:45
Normal topic Abinitio Structure Prediction - Sanity Test
by westleys » Tue, 2010-06-01 00:28
2
1,390 by westleys
Mon, 2014-04-21 06:47
Normal topic Chi values for side chains when switching from centroid mode
by MarkW » Fri, 2015-07-03 04:43
2
1,193 by MarkW
Fri, 2015-07-03 15:36
Normal topic Number of conformations needed
by JadAbbass » Sun, 2014-02-16 13:21
2
1,131 by JadAbbass
Tue, 2014-02-18 07:27
Normal topic relax with restraints
by jtmacd » Mon, 2010-11-08 09:11
2
1,416 by jtmacd
Mon, 2014-04-21 06:47
Normal topic make fragments for a loop
by jarod » Mon, 2010-03-15 07:31
2
1,407 by jarod
Mon, 2014-04-21 06:47
Normal topic Why I_sc of Rosetta 2016.02 and 2018.21 are so different?
by eminegenetics » Mon, 2018-07-16 12:51
2
514 by eminegenetics
Wed, 2018-07-18 13:48
Normal topic SnugDock equivalent in newer Rosetta code
by SenyorDrew » Tue, 2016-03-29 09:16
2
1,187 by SenyorDrew
Wed, 2016-04-06 10:52
Normal topic activation of filters in rosetta3.0 or later
by exchhattu » Thu, 2009-12-03 17:52
2
1,224 by exchhattu
Mon, 2014-04-21 06:47
Normal topic How to generate score file for loop refinement or modelling?
by zhisheng » Fri, 2011-12-09 05:15
2
1,742 by zhisheng
Mon, 2014-04-21 06:47
Normal topic What is a "silent file"?
by lanselibai » Mon, 2014-09-22 02:43
2
4,014 by lanselibai
Mon, 2014-09-22 08:13
Normal topic How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers?
by johnnytam100 » Wed, 2019-05-08 02:30
2
217 by johnnytam100
Wed, 2019-05-15 18:45
Normal topic Negative design: Can a filter call a mover in rosetta scripts?
by jgans » Sat, 2012-09-08 21:28
2
1,904 by rmoretti
Mon, 2014-04-21 06:47
Normal topic FlexPepDocking.mpi.linuxgccrelease bails out ERROR: total_residue() != 0 ERROR:: Exit from: src/core/pose/Pose.cc line: 1369
by knutjbj » Thu, 2011-02-03 03:24
2
3,140 by knutjbj
Mon, 2014-04-21 06:47
Normal topic perturb_temp flag
by Loki01 » Tue, 2018-11-27 05:06
2
246 by rmoretti
Wed, 2019-04-03 09:58
Normal topic redesign a enzyme by fixing the active site
by Lindsay » Wed, 2012-03-07 08:23
2
1,595 by Lindsay
Mon, 2014-04-21 06:47
Normal topic fixbb and HETATM
by doranhen » Mon, 2013-01-14 07:50
2
1,772 by doranhen
Mon, 2014-04-21 06:47
Normal topic ERROR:: Exit from: src/core/fragment/ConstantLengthFragSet.cc line: 116
by phanvy » Wed, 2014-10-08 22:28
2
1,372 by phanvy
Wed, 2014-10-15 21:41
Normal topic rama energy term and explicit zero
by SergeyP » Sat, 2015-12-19 05:25
2
1,250 by SergeyP
Sun, 2015-12-20 01:44
Normal topic Calibur-linux binary or source code availability?
by jasnyderjr » Sat, 2016-12-10 23:36
2
1,107 by jadolfbr
Sun, 2016-12-11 10:53
Normal topic restricting space in a design
by ast » Tue, 2012-01-17 06:31
2
1,316 by rmoretti
Mon, 2014-04-21 06:47
Normal topic filter score by I_sc and keep top 1000
by aaj » Tue, 2016-01-19 07:13
2
1,269 by aaj
Mon, 2016-02-22 07:43
Normal topic Different weights in the constraints for each stage of AbinitioRelax
by allan.ferrari » Sun, 2017-01-15 04:35
2
1,024 by smlewis
Sun, 2017-01-15 18:10
Normal topic Basic help with Protein-DNA and Protein-Protein modeling and engineering
by Robert Evans » Sat, 2013-08-17 12:21
2
2,084 by Robert Evans
Mon, 2014-04-21 06:48
Normal topic Selecting Top Scoring Decoys
by kalabharath » Thu, 2011-10-20 22:08
2
1,425 by rmoretti
Mon, 2014-04-21 06:47
Normal topic RestrictToRepackingRLT and PreventRepackingRLT
by coomteng@gmail.com » Mon, 2018-03-05 11:19
2
554 by coomteng@gmail.com
Tue, 2018-03-06 02:31
Normal topic Reading chloride anions
by Martin Floor » Mon, 2018-08-27 14:29
2
458 by Martin Floor
Tue, 2018-08-28 13:21
Normal topic Minimizing across jumps
by SenyorDrew » Thu, 2017-07-06 06:26
2
798 by SenyorDrew
Thu, 2017-07-06 07:48
Normal topic create a centroid file from structure or NOE list
by logandonaldson » Wed, 2013-03-20 12:23
3
3,079 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fastrelax energy
by Lindsay » Thu, 2014-01-16 21:04
3
2,681 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Rosetta documentation
by Ashafix » Sat, 2013-08-31 06:50
3
2,980 by Ashafix
Mon, 2014-04-21 06:48
Normal topic How to set up options in rosetta
by alejandro » Wed, 2011-04-06 02:08
3
2,838 by smlewis
Mon, 2014-04-21 06:47
Normal topic Question about run FLEXPEPDOCK with 3 chain
by phanvy » Wed, 2014-07-02 08:46
3
1,600 by phanvy
Wed, 2014-07-02 23:32
Normal topic Symmetric local protein docking
by efratmas » Tue, 2011-01-11 03:00
3
2,625 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to use rosettadesign to do mutations on protein structure
by lqzhang » Thu, 2010-03-04 07:43
3
2,252 by vanita
Mon, 2014-04-21 06:47
Normal topic Rosetta can't handle symmetric fold and dock for >10-subunit protein?
by myang » Mon, 2011-09-26 11:52
3
1,879 by IAndre
Mon, 2014-04-21 06:47
Normal topic relax - P6G molecule
by allan.ferrari » Wed, 2016-11-30 05:01
3
1,102 by allan.ferrari
Tue, 2017-01-03 05:02
Normal topic # decoys of silent
by fred » Wed, 2014-04-02 06:00
3
1,419 by fred
Fri, 2014-04-04 11:34
Normal topic AnchoredPDBcreator
by spraha » Wed, 2012-03-14 23:34
3
1,540 by smlewis
Mon, 2014-04-21 06:47
Normal topic CDR Cluster Constrained Relax Equivalent
by SenyorDrew » Wed, 2016-04-27 08:04
3
1,549 by SenyorDrew
Tue, 2016-06-14 06:43
Normal topic Questions about rosetta fragment library ranking and fragment conformation sampling algorithm
by mdyini » Thu, 2011-05-19 17:34
3
2,805 by dgront
Mon, 2014-04-21 06:47
Normal topic change DOF of NH3 group in N terminus
by SergeyP » Wed, 2016-02-03 02:22
3
1,607 by SergeyP
Thu, 2016-02-04 00:07
Normal topic why docking results are different?
by albumns » Sat, 2010-12-18 23:53
3
1,652 by smlewis
Mon, 2014-04-21 06:47
Normal topic score_jd2.macosclangrelease No such file or directory
by ahmadkhalifa » Mon, 2017-11-27 09:26
3
899 by everyday847
Tue, 2017-11-28 13:07
Normal topic Weird results from flexpepdock MPI
by gerdos » Fri, 2016-06-24 01:18
3
1,158 by smlewis
Thu, 2016-06-30 08:44
Normal topic Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles?
by nh_prt » Tue, 2013-03-26 12:22
3
1,693 by smlewis
Mon, 2014-04-21 06:47
Normal topic is it possbile to cluster pdb files?
by albumns » Wed, 2010-10-06 02:38
3
3,002 by smlewis
Mon, 2014-04-21 06:47
Normal topic Hbond tripped
by alejandro » Mon, 2011-11-21 04:17
3
1,947 by alejandro
Mon, 2014-04-21 06:47
Normal topic Constraints and final scoring of satisfied constraints in ab initio
by Azadeh » Tue, 2014-07-15 01:29
3
4,021 by rmoretti
Thu, 2014-07-17 09:21
Normal topic Failure to find libraries during build
by NCallahan » Mon, 2010-07-26 15:41
3
3,042 by smlewis
Mon, 2014-04-21 06:47
Normal topic Abinitio isolated
by ac.research » Wed, 2018-04-04 07:36
3
580 by smlewis
Wed, 2018-04-04 10:42
Normal topic Modeling protonated histidine
by SenyorDrew » Mon, 2016-07-18 07:34
3
1,536 by matteoferla
Sat, 2017-08-05 07:18
Normal topic Segmentation fault
by Hongtham » Mon, 2014-12-15 20:21
3
2,672 by Sandy
Fri, 2015-08-07 15:49
Normal topic Refinement of a PDB structure containing multiple models
by ahmadkhalifa » Wed, 2018-04-18 07:44
3
575 by smlewis
Wed, 2018-04-18 19:03
Normal topic Does Rosetta have an app for detecting brakes and clashes in proteins
by Anatol » Sat, 2012-09-08 15:48
3
2,126 by smlewis
Mon, 2014-04-21 06:47
Normal topic trying to create heme.params
by einew » Mon, 2011-02-28 13:33
3
2,398 by einew
Mon, 2014-04-21 06:47
Normal topic interpreting score values in silent output file after running abinitiorelax
by burkheadlab » Wed, 2011-03-09 15:42
3
1,665 by smlewis
Mon, 2014-04-21 06:47
Normal topic prepare PDB with constrained relax
by jarod » Sun, 2013-05-05 07:10
3
3,042 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Propagating the same mutation over "different" chains
by mdeklotz » Thu, 2018-07-26 09:27
3
492 by rmoretti
Fri, 2018-08-03 08:42
Normal topic force field, energy function
by masterofpuppets » Wed, 2015-01-21 11:06
3
2,743 by masterofpuppets
Tue, 2015-01-27 07:07
Normal topic Multiprocessor Execution
by starone » Tue, 2016-04-19 20:06
3
1,656 by smlewis
Thu, 2016-04-21 16:00
Normal topic Getting an interface score from RosettaDock without docking
by rosend » Fri, 2015-12-18 14:02
3
2,846 by rosend
Fri, 2015-12-18 19:39
Normal topic General protein-protein docking when no info. on structure is availble
by jasnyderjr » Fri, 2016-12-09 04:55
3
1,238 by smlewis
Tue, 2016-12-20 10:40
Normal topic Rescoring protein docking decoys to get Irms
by lj269 » Thu, 2014-10-23 13:23
3
2,065 by rmoretti
Wed, 2014-10-29 14:30
Normal topic I am a beginner in rosetta software and need help to build params file
by nais » Fri, 2011-03-18 13:37
3
4,552 by rmoretti
Mon, 2014-04-21 06:47
Normal topic RosettaHoles?
by kbala » Thu, 2009-07-30 16:52
3
1,793 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to output a structure when scoring it?
by tianbu » Tue, 2012-07-31 09:38
3
2,344 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ligand docking with rosetta_scripts.linuxgccrelease
by xpzhang » Thu, 2015-02-26 10:57
3
2,102 by rmoretti
Mon, 2015-03-30 16:58
Normal topic Cyclizing .pdb of a linear chain.
by jcminerlanl » Wed, 2017-07-05 23:56
3
1,033 by jcminerlanl
Thu, 2017-07-06 09:22
Normal topic Questions about Monte Carlo Simulated Annealing algorithm in the design protocols
by mdyini » Thu, 2012-05-31 12:39
3
3,313 by smlewis
Mon, 2014-04-21 06:47
Normal topic fix backbone design of interface residue
by Lindsay » Tue, 2013-12-17 19:23
3
2,367 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Determine the weights of score functions
by SunH » Thu, 2010-09-02 07:20
3
2,541 by smlewis
Mon, 2014-04-21 06:47
Normal topic Abinitio starts at the 27th amino acid
by JadAbbass » Thu, 2013-08-29 05:38
3
1,793 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic ERROR: unrecognized atomtype property VIRTUAL
by harshkhare » Mon, 2011-11-14 09:40
3
1,908 by harshkhare
Mon, 2014-04-21 06:47
Normal topic Side-chain packing with multiple chains
by pachecoj » Mon, 2014-04-21 16:53
3
2,358 by jadolfbr
Mon, 2014-04-21 21:05
Normal topic does rosetta good at peptide-protein docking?
by albumns » Mon, 2010-12-27 18:51
3
3,346 by smlewis
Mon, 2014-04-21 06:47
Normal topic error for the pose reading:TRP:NtermProteinFull:triazolamerC missing: C1
by wyb » Fri, 2017-12-01 17:50
3
990 by rmoretti
Sat, 2017-12-16 12:19
Normal topic Adding new files using rosetta classes went wrong
by Jeremy1990 » Sun, 2015-04-26 01:07
3
1,852 by rmoretti
Thu, 2015-04-30 16:09
Normal topic how to make a combined PDB file?
by fenghc » Mon, 2013-04-01 06:27
3
10,713 by smlewis
Mon, 2014-04-21 06:47
Normal topic Criteria on the calculation of Irmsd of the protein-protein interface
by yzq » Tue, 2012-02-21 07:06
3
2,350 by smlewis
Mon, 2014-04-21 06:47
Normal topic score terms
by qlj » Wed, 2013-07-03 08:00
3
2,156 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Docking 2 proteins including ligands
by einew » Tue, 2011-03-08 13:33
3
1,885 by einew
Mon, 2014-04-21 06:47
Normal topic Rosetta lack of necessary application
by ylwang » Wed, 2018-11-07 01:13
3
497 by rmoretti
Wed, 2018-11-21 13:50
Normal topic Abinitio Video
by ac.research » Tue, 2017-09-12 04:00
3
922 by ac.research
Sun, 2017-09-24 11:25
Normal topic Problem with running turtorial of rna denovo
by myle » Fri, 2017-04-14 09:23
3
947 by rmoretti
Tue, 2017-04-18 13:49
Normal topic Converting charmm parameter files (.par)
by ajasja » Mon, 2014-09-29 07:19
3
1,710 by jcminerlanl
Tue, 2017-12-19 14:03
Normal topic rosetta on snow leopard?
by nitroamos » Thu, 2009-10-01 17:07
3
2,376 by nitroamos
Mon, 2014-04-21 06:47
Normal topic how to identify selected interface residues
by vijayaraj81 » Mon, 2014-03-31 01:40
3
1,941 by rmoretti
Tue, 2014-04-01 08:12
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