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Rosetta 3 - General

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Normal topic How to allow rosetta to recognize the ASP and protonated ASP?
by Jeffrey_Chen » Mon, 2014-03-24 20:34
2
2,045 by Jeffrey_Chen
Tue, 2014-03-25 23:06
Normal topic Free FSC score for validating refinement
by ahmadkhalifa » Thu, 2018-05-10 05:53
2
623 by ahmadkhalifa
Fri, 2018-06-29 07:54
Normal topic RosettaDesign
by ac.research » Sun, 2019-07-21 01:20
2
903 by ac.research
Sat, 2019-08-03 08:12
Normal topic what is the relationship and difference between Rosetta 3.0 and miniRosetta
by jarod » Thu, 2010-05-06 20:57
2
1,441 by jarod
Mon, 2014-04-21 06:47
Normal topic Cluster application, How does it sort decoys by energy?
by Apiwat » Wed, 2014-04-16 01:52
2
1,439 by Apiwat
Thu, 2014-04-17 09:56
Normal topic Creation of core.* file in current running directory
by alejandro » Tue, 2011-12-06 06:19
2
1,571 by alejandro
Mon, 2014-04-21 06:47
Normal topic Multigraft
by bo » Tue, 2013-12-24 18:06
2
1,697 by Sergey Menis
Mon, 2014-04-21 06:48
Normal topic Meaning of a couple terms?
by aloshbau » Sun, 2016-02-07 16:48
2
1,063 by aloshbau
Sun, 2016-02-14 20:14
Normal topic PDB HETATM
by hwillis » Thu, 2009-08-06 12:03
2
2,221 by smlewis
Mon, 2014-04-21 06:47
Normal topic Connecting 2 Domains Via Non-Flexible Linker
by jurkm » Mon, 2011-09-05 06:10
2
3,700 by kbuhr
Tue, 2015-07-14 04:30
Normal topic Symmetric Processing for evaluating side-chain of chi angle
by qlj » Wed, 2012-10-10 04:08
2
1,466 by smlewis
Mon, 2014-04-21 06:47
Normal topic minimum number of nstruct to build at 65% homolgy
by MRH » Thu, 2013-08-22 07:29
2
1,480 by MRH
Mon, 2014-04-21 06:48
Normal topic Fragment file viewers
by MajorID » Fri, 2012-02-24 20:57
2
1,408 by smlewis
Mon, 2014-04-21 06:47
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Thu, 2016-06-30 11:06
2
2,022 by rmoretti
Tue, 2016-07-12 08:18
Normal topic RosettaDOM
by ndousis » Sun, 2010-12-12 01:08
2
1,689 by ndousis
Mon, 2014-04-21 06:47
Normal topic is there a preferred way to enforce an hydrogen bond ?
by logandonaldson » Wed, 2013-03-20 13:14
2
1,437 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Fragment picker
by phanvy » Mon, 2014-12-08 04:25
2
1,481 by phanvy
Wed, 2014-12-10 00:17
Normal topic InterfaceAnalyzer atom subset
by Parker.deWaal » Sun, 2016-03-13 13:41
2
1,191 by rmoretti
Mon, 2016-03-14 07:58
Normal topic Data Check for a newb
by ac.research » Sun, 2017-03-12 23:42
2
860 by ac.research
Fri, 2017-03-31 07:36
Normal topic MSDMover error in RECON protocol
by yifeili1983 » Mon, 2019-04-01 00:44
2
316 by yifeili1983
Mon, 2019-04-15 22:34
Normal topic weird prolines with hydroxyls from fixbb.linuxgccrelease
by louisclark » Wed, 2010-08-25 15:01
2
1,391 by louisclark
Mon, 2014-04-21 06:47
Normal topic Having trouble producing a .pdb file from a silent output file after running abinitio relax
by burkheadlab » Wed, 2011-03-09 12:48
2
1,548 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic Adding noncanonical amino acid (PCA) to Rosetta 3
by JuliusSu » Fri, 2014-08-01 11:23
2
2,086 by JuliusSu
Fri, 2014-08-08 02:07
Normal topic question about scoring silent output files and their contents
by burkheadlab » Wed, 2011-07-27 16:28
2
1,831 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Documentation missing in MultiGraft
by aroop » Thu, 2012-03-15 07:39
2
1,612 by aroop
Mon, 2014-04-21 06:47
Normal topic RosettaRemodel
by berk » Wed, 2013-07-10 11:21
2
1,285 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Radius of Gyration
by ctaylor » Mon, 2009-09-21 12:45
2
2,225 by ctaylor
Mon, 2014-04-21 06:47
Normal topic double mutations scan
by Lindsay » Fri, 2012-04-27 12:51
2
1,522 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Using a broker file with relax
by Al52 » Mon, 2015-11-30 20:24
2
1,141 by Al52
Tue, 2015-12-01 18:22
Normal topic Can I use the relax mode application for removing clashes in a membrane protein homology model?
by doranhen » Thu, 2012-12-20 05:45
2
1,470 by doranhen
Mon, 2014-04-21 06:47
Normal topic force hydrogen rebuild on input
by jtmacd » Mon, 2013-11-18 08:28
2
1,433 by jtmacd
Mon, 2014-04-21 06:48
Normal topic AbInitioRelax.mpi Hangs - Waiting for Job Request
by nleroy » Thu, 2019-10-31 07:30
2
197 by nleroy
Fri, 2019-11-08 12:44
Normal topic cluster input_score_filter
by lj269 » Thu, 2011-09-01 15:29
2
1,583 by attesor
Fri, 2014-10-31 04:23
Normal topic Does RNA parses checkpoint matrix as well as protein
by qlj » Wed, 2014-03-05 06:03
2
1,266 by qlj
Thu, 2014-03-06 22:20
Normal topic metal_ions formal charge question
by lah435 » Tue, 2015-02-03 09:35
2
1,464 by lah435
Thu, 2015-02-12 09:16
Normal topic Checkpoints in Rosetta
by exchhattu » Mon, 2009-10-19 17:47
2
1,428 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Structure Prediction: Max Sequence Length?
by jcsaborio » Tue, 2009-07-14 12:10
2
2,109 by jcsaborio
Mon, 2014-04-21 06:47
Normal topic Docking failure
by khanhbinh » Sun, 2012-09-23 22:19
2
1,522 by khanhbinh
Mon, 2014-04-21 06:47
Normal topic Multi-chain Modelling
by Sandy » Sun, 2015-08-09 14:41
2
2,039 by rmoretti
Tue, 2015-09-08 10:18
Normal topic Performace Benchmarking
by Tushar Kush » Wed, 2019-12-04 02:50
2
61 by smlewis
Wed, 2019-12-04 13:07
Normal topic Why I have the different result with the same initial condition?
by mikelin » Sat, 2011-06-04 11:35
2
2,591 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Design with non-canonical amino acids (NCAA)
by yinasun » Mon, 2019-08-05 00:34
2
189 by matteoferla
Thu, 2019-08-22 05:39
Normal topic How to generate score file for loop refinement or modelling?
by zhisheng » Fri, 2011-12-09 05:15
2
1,807 by zhisheng
Mon, 2014-04-21 06:47
Normal topic hydroxyproline patching problem
by aaj » Mon, 2016-02-22 07:33
2
1,348 by aaj
Mon, 2016-02-29 04:45
Normal topic ligand dock residue selection
by Silice » Wed, 2009-08-12 08:57
2
1,273 by frichter
Mon, 2014-04-21 06:47
Normal topic Parallel computing in RosettaDock3.1?
by xhluo » Fri, 2010-09-03 02:31
3
1,910 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta3.2 cluster application file-reading error
by mdyini » Wed, 2011-03-09 16:59
3
3,586 by smlewis
Mon, 2014-04-21 06:47
Normal topic Information about “membrane_highres_Menv_smooth.wts”
by Groros » Sun, 2011-10-02 03:59
3
1,914 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg calculation
by Lindsay » Thu, 2013-09-12 10:19
3
3,086 by Lindsay
Mon, 2014-04-21 06:48
Normal topic Solving van der waals clashes in a transmembrane protein model with rosetta
by doranhen » Wed, 2012-12-05 00:12
3
1,869 by smlewis
Mon, 2014-04-21 06:47
Normal topic calculate low-resolution total docking score for a input pdb
by jasnyderjr » Fri, 2015-12-11 23:08
3
1,749 by rmoretti
Wed, 2015-12-16 11:22
Normal topic Rotamer Library Generation in Rosetta3
by jcminerlanl » Wed, 2016-11-30 07:34
3
1,789 by sk0319
Thu, 2017-01-05 17:07
Normal topic Does Rosetta have homology modeling protocol?
by SunH » Thu, 2010-11-04 07:36
3
2,390 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to set up options in rosetta
by alejandro » Wed, 2011-04-06 02:08
3
2,932 by smlewis
Mon, 2014-04-21 06:47
Normal topic Denovo density didn't output a structure
by ahmadkhalifa » Mon, 2018-02-12 08:10
3
808 by ylwang
Wed, 2018-11-14 03:03
Normal topic obtaing pdb files
by knutjbj » Fri, 2011-02-25 11:05
3
1,758 by scombs
Mon, 2014-04-21 06:47
Normal topic -loops:refine_repack_cycles option not accepted by loopmodel.linuxgccrelease
by tsjain » Tue, 2013-02-05 18:47
3
1,892 by tsjain
Mon, 2014-04-21 06:47
Normal topic run Rosetta under windows prompt
by skipper » Fri, 2013-12-20 21:16
3
2,420 by rmoretti
Mon, 2014-04-21 06:48
Normal topic sequence_tolerance is very slow when -ms:num_packs > 1
by coomteng@gmail.com » Thu, 2016-08-25 13:17
3
1,262 by coomteng@gmail.com
Fri, 2016-08-26 00:01
Normal topic How to generate constraints of active sites from a pdb file of an enzyme
by Albert » Sun, 2013-05-26 20:07
3
1,820 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Change the number of residues on pdb file!
by phanvy » Tue, 2014-04-15 23:26
3
5,626 by rmoretti
Mon, 2015-02-09 09:09
Normal topic Binding energy calculation
by SunH » Thu, 2010-12-09 19:29
3
3,015 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic create a centroid file from structure or NOE list
by logandonaldson » Wed, 2013-03-20 12:23
3
3,154 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fastrelax energy
by Lindsay » Thu, 2014-01-16 21:04
3
2,737 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Rosetta Design Stalling
by Jhreed » Sun, 2016-03-06 14:38
3
1,385 by rmoretti
Mon, 2016-03-07 14:20
Normal topic ERROR: f.check_fold_tree
by sudhar » Mon, 2010-08-23 08:59
3
1,806 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta can't handle symmetric fold and dock for >10-subunit protein?
by myang » Mon, 2011-09-26 11:52
3
1,957 by IAndre
Mon, 2014-04-21 06:47
Normal topic Rosetta documentation
by Ashafix » Sat, 2013-08-31 06:50
3
3,043 by Ashafix
Mon, 2014-04-21 06:48
Normal topic Rosetta remodel on intel Xeon Phi
by pablogalazdavison » Wed, 2016-09-14 15:35
3
1,399 by pablogalazdavison
Thu, 2016-09-15 16:36
Normal topic AnchoredPDBcreator
by spraha » Wed, 2012-03-14 23:34
3
1,615 by smlewis
Mon, 2014-04-21 06:47
Normal topic Bind a Ligand to RNA
by hdavis9 » Wed, 2010-07-14 09:07
3
1,426 by smlewis
Mon, 2014-04-21 06:47
Normal topic Questions about rosetta fragment library ranking and fragment conformation sampling algorithm
by mdyini » Thu, 2011-05-19 17:34
3
2,868 by dgront
Mon, 2014-04-21 06:47
Normal topic Hbond tripped
by alejandro » Mon, 2011-11-21 04:17
3
2,011 by alejandro
Mon, 2014-04-21 06:47
Normal topic how to use rosettadesign to do mutations on protein structure
by lqzhang » Thu, 2010-03-04 07:43
3
2,313 by vanita
Mon, 2014-04-21 06:47
Normal topic Error Scoring Application- Illegal attempt to score
by samuelrpita » Thu, 2015-08-06 14:45
3
2,103 by rmoretti
Wed, 2015-08-12 15:03
Normal topic # decoys of silent
by fred » Wed, 2014-04-02 06:00
3
1,483 by fred
Fri, 2014-04-04 11:34
Normal topic trying to create heme.params
by einew » Mon, 2011-02-28 13:33
3
2,450 by einew
Mon, 2014-04-21 06:47
Normal topic Question about run FLEXPEPDOCK with 3 chain
by phanvy » Wed, 2014-07-02 08:46
3
1,642 by phanvy
Wed, 2014-07-02 23:32
Normal topic score_jd2.macosclangrelease No such file or directory
by ahmadkhalifa » Mon, 2017-11-27 09:26
3
994 by everyday847
Tue, 2017-11-28 13:07
Normal topic Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles?
by nh_prt » Tue, 2013-03-26 12:22
3
1,757 by smlewis
Mon, 2014-04-21 06:47
Normal topic Abinitio isolated
by ac.research » Wed, 2018-04-04 07:36
3
638 by smlewis
Wed, 2018-04-04 10:42
Normal topic interpreting score values in silent output file after running abinitiorelax
by burkheadlab » Wed, 2011-03-09 15:42
3
1,719 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does Rosetta have an app for detecting brakes and clashes in proteins
by Anatol » Sat, 2012-09-08 15:48
3
2,209 by smlewis
Mon, 2014-04-21 06:47
Normal topic Refinement of a PDB structure containing multiple models
by ahmadkhalifa » Wed, 2018-04-18 07:44
3
629 by smlewis
Wed, 2018-04-18 19:03
Normal topic I am a beginner in rosetta software and need help to build params file
by nais » Fri, 2011-03-18 13:37
3
4,621 by rmoretti
Mon, 2014-04-21 06:47
Normal topic relax - P6G molecule
by allan.ferrari » Wed, 2016-11-30 05:01
3
1,164 by allan.ferrari
Tue, 2017-01-03 05:02
Normal topic ERROR: unrecognized atomtype property VIRTUAL
by harshkhare » Mon, 2011-11-14 09:40
3
1,980 by harshkhare
Mon, 2014-04-21 06:47
Normal topic Propagating the same mutation over "different" chains
by mdeklotz » Thu, 2018-07-26 09:27
3
553 by rmoretti
Fri, 2018-08-03 08:42
Normal topic Failure to find libraries during build
by NCallahan » Mon, 2010-07-26 15:41
3
3,124 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric local protein docking
by efratmas » Tue, 2011-01-11 03:00
3
2,687 by smlewis
Mon, 2014-04-21 06:47
Normal topic prepare PDB with constrained relax
by jarod » Sun, 2013-05-05 07:10
3
3,112 by rmoretti
Mon, 2014-04-21 06:47
Normal topic CDR Cluster Constrained Relax Equivalent
by SenyorDrew » Wed, 2016-04-27 08:04
3
1,622 by SenyorDrew
Tue, 2016-06-14 06:43
Normal topic Questions about Monte Carlo Simulated Annealing algorithm in the design protocols
by mdyini » Thu, 2012-05-31 12:39
3
3,414 by smlewis
Mon, 2014-04-21 06:47
Normal topic fix backbone design of interface residue
by Lindsay » Tue, 2013-12-17 19:23
3
2,445 by rmoretti
Mon, 2014-04-21 06:48
Normal topic change DOF of NH3 group in N terminus
by SergeyP » Wed, 2016-02-03 02:22
3
1,703 by SergeyP
Thu, 2016-02-04 00:07
Normal topic RosettaHoles?
by kbala » Thu, 2009-07-30 16:52
3
1,865 by smlewis
Mon, 2014-04-21 06:47
Normal topic Criteria on the calculation of Irmsd of the protein-protein interface
by yzq » Tue, 2012-02-21 07:06
3
2,419 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to output a structure when scoring it?
by tianbu » Tue, 2012-07-31 09:38
3
2,402 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Side-chain packing with multiple chains
by pachecoj » Mon, 2014-04-21 16:53
3
2,416 by jadolfbr
Mon, 2014-04-21 21:05
Normal topic Weird results from flexpepdock MPI
by gerdos » Fri, 2016-06-24 01:18
3
1,225 by smlewis
Thu, 2016-06-30 08:44
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