I have a residue in my protein, that is non-canonical and that I named REL.
After all the steps from https://www.rosettacommons.org/demos/latest/public/design_with_ncaa/README with the only difference in using molfile_to_params.py instead of molfile_to_params_polymer.py, because the second doesn't work in my rosetta suite.
My question is: what is the final step? In what folder shall I put the params file to work with REL amino acid?
Thank you in advance,