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Rosetta 3 - General
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How to use Rosetta Position constraint docking? by libai2098 » Mon, 2011-05-09 01:08 |
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2,309 |
by libai2098 Mon, 2014-04-21 06:47 |
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NMR / NOE related tools in 3.2 ? by smg3d » Sun, 2011-02-06 06:11 |
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2,308 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta groups in Scandinavia by knutjbj » Mon, 2010-11-15 23:50 |
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2,307 |
by smlewis Mon, 2014-04-21 06:47 |
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Do Rosetta support hydroxide(OH-) and oxide(O2-) params? by dasdevashishdas » Thu, 2018-08-16 21:15 |
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2,303 |
by dasdevashishdas Thu, 2018-08-23 18:02 |
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rosetta compile by MA » Wed, 2017-04-26 00:46 |
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2,299 |
by MA Thu, 2017-04-27 18:53 |
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LHOC script problem in Rosetta Antibody by ziheng@mit.edu » Thu, 2019-04-25 14:19 |
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2,296 |
by Brian Wiley Sat, 2023-02-04 23:26 |
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Fitting a structure with an unrecognized residue to an EM density by ahmadkhalifa » Tue, 2017-12-05 14:44 |
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2,289 |
by ahmadkhalifa Wed, 2017-12-06 12:30 |
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H3 modelling scoring function by aneamtu » Wed, 2017-12-27 23:10 |
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2,289 |
by aneamtu Mon, 2018-01-08 23:49 |
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why not scoring function in loop model? by albumns » Thu, 2011-01-06 00:13 |
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2,288 |
by smlewis Mon, 2014-04-21 06:47 |
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Helix at loop site by berk » Fri, 2013-05-31 07:04 |
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2,286 |
by smlewis Mon, 2014-04-21 06:48 |
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Performance improvement in AbinitioRelax and relax 3.2 ??? by smg3d » Sun, 2011-02-06 08:59 |
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2,285 |
by smlewis Mon, 2014-04-21 06:47 |
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ab initio folding part of a protein by attesor » Wed, 2013-03-06 04:39 |
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2,284 |
by smlewis Mon, 2014-04-21 06:47 |
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question about the exposed strand results in beta_strand_homodimer_design demo by szypanther » Wed, 2014-06-04 00:47 |
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2,283 |
by rmoretti Mon, 2014-06-09 10:05 |
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snugdock and rosetta 3.2?? by sudhar » Thu, 2011-02-24 00:36 |
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2,281 |
by smlewis Mon, 2014-04-21 06:47 |
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Output fasta of enzdes generated pdbs by eyong123 » Tue, 2015-05-19 08:07 |
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2,280 |
by rmoretti Mon, 2015-05-25 11:07 |
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Rosetta Resfile header by G Mustafa » Mon, 2020-01-20 06:45 |
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2,276 |
by G Mustafa Tue, 2020-01-21 06:04 |
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backrub and design by jtmacd » Thu, 2009-06-04 08:44 |
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2,270 |
by jtmacd Mon, 2014-04-21 06:47 |
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make_fragments.pl without sparks by nannemdp » Mon, 2014-06-09 13:18 |
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2,268 |
by rmoretti Tue, 2014-06-10 11:34 |
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Running Backrub by enoee » Wed, 2010-10-27 07:51 |
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2,268 |
by smlewis Mon, 2014-04-21 06:47 |
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Compilation in Mac OS 10.6 by rjn » Thu, 2010-02-18 12:35 |
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2,266 |
by smlewis Mon, 2014-04-21 06:47 |
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Non-ideal residue detected by cnelson » Thu, 2010-07-01 12:20 |
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2,262 |
by smlewis Mon, 2014-04-21 06:47 |
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Can Rosetta generate proteins with sidechains ? by wszjzhang » Fri, 2010-01-08 08:26 |
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2,260 |
by smlewis Mon, 2014-04-21 06:47 |
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How to make Rosetta's sampling more aggresive ? by jiongzhang » Mon, 2012-03-12 11:04 |
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2,259 |
by rmoretti Mon, 2014-04-21 06:47 |
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dock_mcm not found by libai2098 » Mon, 2011-03-14 00:02 |
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2,257 |
by smlewis Mon, 2014-04-21 06:47 |
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"Illegal Instruction" for particular Movers/Filters by Jhreed » Thu, 2016-08-11 12:59 |
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2,257 |
by smlewis Thu, 2016-08-11 13:16 |
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Error running GenericMonteCarlo mover within MultipleOutputWrapper mover by abhi_pe_acharya » Mon, 2018-04-16 04:58 |
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2,256 |
by abhi_pe_acharya Thu, 2018-04-19 03:49 |
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Symmetric Docking (Making Trimer from Monomerics Units) by sdg_lab » Thu, 2012-04-12 09:21 |
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2,251 |
by rmoretti Mon, 2014-04-21 06:47 |
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ab initio protein structure prediction by croshong » Wed, 2009-12-16 23:25 |
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2,250 |
by smlewis Mon, 2014-04-21 06:47 |
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Structure refinement with RDC constraint by shushunur » Thu, 2018-01-18 00:44 |
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2,249 |
by rmoretti Tue, 2018-01-30 09:08 |
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Does Rosetta 3.1 have the 9999 limitation? by wtscrystal » Sat, 2009-11-07 01:18 |
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2,248 |
by smlewis Mon, 2014-04-21 06:47 |
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Does comparative modeling works for membrane proteins by justin » Wed, 2012-03-21 04:58 |
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2,243 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: Illegal value for real option -docking:dock_pert specified: 8 by libai2098 » Tue, 2011-03-15 02:26 |
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2,232 |
by smlewis Mon, 2014-04-21 06:47 |
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question about protein docking results by albumns » Thu, 2010-11-25 08:19 |
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2,229 |
by smlewis Mon, 2014-04-21 06:47 |
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Memory leak? Memory consumption rises quickly when using JD2 app(s) by yuvals » Mon, 2014-10-06 11:35 |
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2,228 |
by yuvals Mon, 2014-10-06 15:02 |
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How to convert fragments to PDB format? by JadAbbass » Wed, 2015-08-19 04:05 |
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2,226 |
by rmoretti Wed, 2015-09-02 12:48 |
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segfault in membrane_abinitio2.mpi by siegert » Sat, 2014-06-14 15:56 |
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2,226 |
by yarovoy Wed, 2016-03-30 12:37 |
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ligand flexibility by dave » Thu, 2015-02-12 08:48 |
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2,224 |
by rmoretti Wed, 2015-02-18 09:17 |
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Computing pairwise energies for rotamers by pachecoj » Sat, 2014-05-03 17:52 |
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2,222 |
by rmoretti Mon, 2014-05-12 07:50 |
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Rosetta matching error by purvi24 » Mon, 2018-03-12 02:38 |
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2,221 |
by smlewis Mon, 2018-03-12 09:57 |
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How did you begin to learn Rosetta? by mdeklotz » Mon, 2018-07-30 10:08 |
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2,221 |
by jkleman Tue, 2018-07-31 13:19 |
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ddG of multiple mutations on a monomer by hltorresvera » Mon, 2021-02-01 16:54 |
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2,220 |
by paulbo Sun, 2024-02-04 22:03 |
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rosetta@home in local PC farm by jarod » Wed, 2010-05-05 18:31 |
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2,220 |
by smlewis Mon, 2014-04-21 06:47 |
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Parallel Installation of ROSETTA3.1 by anirbanzz » Mon, 2009-12-07 21:09 |
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2,220 |
by smlewis Mon, 2014-04-21 06:47 |
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Cluster decoys after running PlexPepDock by phanvy » Thu, 2014-06-19 06:03 |
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2,215 |
by nawsad Fri, 2014-06-20 02:48 |
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local refinement by mahajanr » Mon, 2010-07-19 15:04 |
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2,215 |
by smlewis Mon, 2014-04-21 06:47 |
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How to design a stand-alone loop from a binding interface? by guangdianzi3 » Fri, 2011-02-11 21:11 |
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2,213 |
by smlewis Mon, 2014-04-21 06:47 |
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optimisation of a protein-protein interface by sdh_h » Thu, 2017-05-04 05:06 |
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2,208 |
by rmoretti Mon, 2017-05-15 09:03 |
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is the RosettaNMR protocol available in Rosetta 3.x? by murgantia » Wed, 2011-01-26 00:39 |
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2,204 |
by smlewis Mon, 2014-04-21 06:47 |
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Bug in LoopMover_Refine_Backrub.cc ? by SunH » Wed, 2010-12-15 00:08 |
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2,203 |
by smlewis Mon, 2014-04-21 06:47 |
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AbInitioRelax.mpi Hangs - Waiting for Job Request by nleroy » Thu, 2019-10-31 07:30 |
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2,202 |
by nleroy Fri, 2019-11-08 12:44 |
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which modules support MPI now? by albumns » Fri, 2013-11-08 01:32 |
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2,202 |
by rmoretti Mon, 2014-04-21 06:48 |
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how to do ensemble docking using rosetta3.1 by lqzhang » Mon, 2010-01-11 10:31 |
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2,200 |
by sid Mon, 2014-04-21 06:47 |
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Problems in installing Rosetta3 in Red Hat Linux by jjz2009 » Mon, 2009-08-24 19:16 |
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2,199 |
by smlewis Mon, 2014-04-21 06:47 |
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tyrosine structure error by dave » Mon, 2012-04-30 04:38 |
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2,198 |
by frichter Mon, 2014-04-21 06:47 |
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opt-E Reference energies by vijayan » Wed, 2013-08-07 07:35 |
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2,197 |
by rmoretti Mon, 2014-04-21 06:48 |
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python problem? by albumns » Fri, 2012-03-02 11:03 |
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2,196 |
by albumns Mon, 2014-04-21 06:47 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:18 |
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2,194 |
by jalan Sun, 2020-04-12 08:01 |
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Rosetta-foldtree and docking by tingting » Tue, 2022-03-15 22:49 |
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2,187 |
by aastha.pal Mon, 2022-06-27 09:55 |
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ERROR: Unable to open weights. by libai2098 » Thu, 2010-12-30 17:54 |
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2,186 |
by smlewis Mon, 2014-04-21 06:47 |
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demo documentation by lshi » Fri, 2009-08-28 08:51 |
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2,182 |
by smlewis Mon, 2014-04-21 06:47 |
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null rosetta energy/score by fred » Tue, 2011-10-18 10:31 |
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2,179 |
by fred Mon, 2014-04-21 06:47 |
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idealization error by albumns » Mon, 2011-02-07 01:28 |
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2,178 |
by smlewis Mon, 2014-04-21 06:47 |
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how to set the output name for fixbb design by Lindsay » Mon, 2012-04-30 09:32 |
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2,170 |
by smlewis Mon, 2014-04-21 06:47 |
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what kind of focefield does Rosetta based on? by albumns » Tue, 2010-07-06 11:08 |
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2,170 |
by smlewis Mon, 2014-04-21 06:47 |
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Modeling by hwillis » Wed, 2009-08-12 11:07 |
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2,167 |
by frichter Mon, 2014-04-21 06:47 |
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Issues running the Matcher in 3.4 and 3.5 by Jhreed » Tue, 2015-05-26 11:38 |
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2,164 |
by rmoretti Wed, 2015-06-17 12:43 |
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Atom_.cc line 304 by fred » Thu, 2014-09-11 12:04 |
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2,163 |
by rmoretti Fri, 2014-09-12 09:11 |
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PDB output sum by enoee » Fri, 2010-07-16 12:29 |
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2,163 |
by smlewis Mon, 2014-04-21 06:47 |
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fragment_picker error secondarysimilarity.cc line:132 by leanawen » Mon, 2013-04-15 14:33 |
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2,163 |
by smlewis Mon, 2014-04-21 06:47 |
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Problems with parametrisation by DmitriiN » Fri, 2016-05-27 04:51 |
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2,159 |
by rmoretti Tue, 2016-07-12 08:43 |
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Running RosettaScripts, but got an error "src/utility/options/OptionCollection.cc, line 1153, No values of the appropriate type" by zhoubin » Sun, 2021-02-28 08:51 |
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2,156 |
by zhoubin Mon, 2021-03-01 22:11 |
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Repeating sequence in Rosetta de novo protein folding by orionshih » Wed, 2018-02-07 20:52 |
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2,154 |
by sheehajh Thu, 2018-02-08 21:18 |
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docking using rosetta3.1 and rosetta2.3 leads to very different results by lqzhang » Thu, 2010-01-14 11:54 |
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2,151 |
by sid Mon, 2014-04-21 06:47 |
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Domain Insertion equivalent in Rosetta 3.2 by SenyorDrew » Wed, 2011-02-09 09:47 |
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2,150 |
by smlewis Mon, 2014-04-21 06:47 |
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RASREC full_run vs. test_run by Lati » Wed, 2015-10-28 03:26 |
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2,148 |
by Lati Fri, 2015-11-20 03:32 |
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setup_run error with multiple resonance lists by aep » Fri, 2016-03-18 13:36 |
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2,148 |
by rmoretti Thu, 2016-04-28 15:49 |
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Plexpepdock with Zn by phanvy » Wed, 2014-06-25 06:10 |
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2,148 |
by rmoretti Tue, 2014-11-04 10:35 |
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Get nchi for heavy atoms by pachecoj » Tue, 2014-11-04 19:04 |
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2,147 |
by rmoretti Tue, 2014-11-11 13:22 |
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have trouble with "relax" models by wszjzhang » Thu, 2010-01-28 10:02 |
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2,147 |
by smlewis Mon, 2014-04-21 06:47 |
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Available of some protocals mentioned in publications by SunH » Mon, 2013-09-09 20:47 |
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2,146 |
by rmoretti Mon, 2014-04-21 06:48 |
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How NMR structures can be inputted to Rosetta? by exchhattu » Mon, 2015-02-09 17:44 |
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2,144 |
by rmoretti Wed, 2015-02-18 09:19 |
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run:test_cycles by ramin » Sun, 2013-03-10 11:05 |
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2,137 |
by smlewis Mon, 2014-04-21 06:47 |
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Total Rama Score by jcminerlanl » Thu, 2018-05-10 07:19 |
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2,137 |
by rmoretti Thu, 2018-06-28 14:28 |
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unit and scientific tests by tricia » Sat, 2009-05-09 23:29 |
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2,134 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop Insertion/Extension using rosetta suite by bharat_46010 » Mon, 2011-02-28 04:45 |
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2,133 |
by smlewis Mon, 2014-04-21 06:47 |
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pmut and scoring by ldlamini » Tue, 2021-09-14 00:46 |
3 |
2,132 |
by matteoferla Mon, 2021-09-20 06:05 |
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Could the Relax step be used separately ? （solved） by wszjzhang » Tue, 2010-03-30 15:00 |
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2,132 |
by smlewis Mon, 2014-04-21 06:47 |
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About generating Fullatom structures by wszjzhang » Wed, 2010-03-24 19:27 |
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2,130 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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Running the Matcher on multiple PDBs by Jhreed » Thu, 2016-02-18 08:50 |
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2,129 |
by rmoretti Sun, 2016-02-21 06:38 |
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rebuilding and refinement by exchhattu » Tue, 2009-10-06 21:13 |
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2,129 |
by smlewis Mon, 2014-04-21 06:47 |
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Question about CartesianMD by orionshih » Sun, 2018-04-29 21:07 |
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2,127 |
by orionshih Tue, 2018-05-01 21:16 |
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Add hemes to cytochrome structures by BuddySphinx » Sun, 2018-12-16 13:46 |
2 |
2,121 |
by rmoretti Fri, 2019-03-29 14:43 |
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Expanding the silent file by jharamesh » Fri, 2018-01-12 09:15 |
2 |
2,121 |
by rmoretti Mon, 2018-01-15 14:35 |
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I got so many atoms in one residue by ylwang » Tue, 2020-03-24 04:40 |
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2,115 |
by ylwang Tue, 2020-03-24 19:35 |
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Is there a way to calculate chi1 and chi1+chi differences between two structures? by sn » Thu, 2017-04-20 21:46 |
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2,113 |
by rmoretti Fri, 2017-04-21 07:52 |
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Rosetta: Clustering by sskim » Sat, 2016-06-11 14:44 |
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2,110 |
by rmoretti Tue, 2016-07-12 08:36 |
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Errors Rosetta symm refine by ms4392 » Fri, 2016-10-21 13:56 |
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2,106 |
by rmoretti Mon, 2016-11-14 14:26 |
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Problem with undetected lower and upper terminus variants for new polymer by Martin Floor » Sat, 2022-06-11 06:51 |
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2,105 |
by matteoferla Fri, 2022-07-01 13:49 |
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non-canonical residues parametrisation by DmitriiN » Tue, 2016-04-05 02:37 |
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2,104 |
by rmoretti Fri, 2016-04-08 08:43 |
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Partial homology modeling in Rosetta by al614 » Mon, 2016-10-31 12:30 |
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2,102 |
by rmoretti Mon, 2016-11-14 15:12 |
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