Dear structure predictors,
For extracting an alignment with the best template I used HHPred.
Which than predicted a chain of a PDB which is not the best one, because it doesn´t contain an important N-terminal part of my target.
I would like to use another chain of this PDB but HHPred doesn´t predict it.
Is there a possibility to have a sequence structure alignment between a defined PDB and my target protein sequence with same quality HHPred does?
Many many thanks for reading my post and I appreciate your contribution to solve my problem.