i am trying to do comparative homology modeling of a dimer. does the input pdb have to have the dimer with both monomer threaded?
when i input a dimer pdb with grishin alignment file of the monomer i get a threaded pdb with only the monomer. can i use this pdb as the input pdb or do i need to thread the other monomer and add that to the input pdb? thanks!
oh and by the way is the robetta server down? thanks.