Unsolved

Hello everybody.

I read that the final step in the low-resolution part of a rosetta classic ab-initio protein fold prediction protol should be rescoring the obteined structures with the score4 in order to discriminate the native-like structures.

Looking for this score4 I could find the following score4-like scores (both in the pyrosetta package and rosetta3.4 package): "score4L", score4_smooth", score4_smooth_cart".
In all papers I've read I could not find any references to any of them but only to "score4". Does anybody know which this "score4" is?

Hello,

i would like to use the CS-HM-Rosetta for homology modelling with chemical shift data. It is stated in the supporting information (http://www.pnas.org/lookup/suppl/doi:10.1073/pnas.1202485109/-/DCSupplem...) that cm_scripts/rosetta_cm.conf needs to be edited before the execution of "cm_scripts/bin/predict_distances.pl sequence.fasta sequence.aln –aln_format grishin –outfile sequence.dist_csts" in order to generate the homology constraints.

Hi,
I'm trying to compile Rosetta in my local machine and then run it in a different one (I am using the extras=static flag). It compiles fine, however when I try to run it in the other machine (cluster) it gives me the error:

FATAL: kernel too old

Hello everybody

doing
score_fxn5=create_score_function( 'score5' )
score_fxn2=create_score_function( 'score2' )

and printing them I obtain the same output, I thought they were meant to be different.

print score_fxn?
ScoreFunction::show():
weights: (vdw 1) (cenpack 0.5) (pair 1) (env 1) (cbeta 0.25) (hs_pair 1) (ss_pair 1) (sheet 1)
energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT
EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12
EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid