Unsolved

Hello everybody,
I do fragment-based loopmodeling which is performing well. Now I want to add a distance constraint to have a disulfide bond between two cysteines but something is going wrong and I get no output. What am i doing wrong?

My input file is:

Does anybody know what this means or how to extract more information to solve the problem?

protocols.forge.remodel.RemodelMover: BUILD CYCLE REMAINING 1
core.chemical.ResidueTypeSet: Finished initializing centroid residue type set. Created 1980 residue types
protocols.forge.components.VarLengthBuild: VLB count_cutpoints 1 interval.left 113 interval.right 122
protocols.forge.components.VarLengthBuild: picking 200 10-mers for position 113
terminate called after throwing an instance of 'std::out_of_range'
what(): basic_string::substr
Got some signal... It is:6

I'm not sure if this the best place to ask, but I couldn't think of anywhere better:

I read and was really impressed by the conclusions of Koga, et al. "Principles for designing ideal protein structures". One thing that really intrigued me was the step in the process described as filtering for "local sequence structure comparability". Neither the article nor the example code seem to indicate how this filtering was done. The example RosettaScripts code simply indicates
## The filter for local sequence structure compatibility was done without using RosettaScripts

Hi,

I'm working on a protein that appears to have some aromatic groups stacking in the x-ray structure, but I could not see such conformers in my models(Ca RMSD 1.1 A to X-ray structure) built with rosetta.
I found there is this term "fa_plane" in the scoring weights that is supposed to describe "pi-pi interaction between aromatic groups, by default = 0", however, there's no scoring method defined for it in the source code. So if I change the weight of this term, it will only give an error message: "ERROR: Requested ScoreType fa_plane does not have a registered EnergyMethodCreator."