Unsolved

Hi ,

I am trying to install rosetta 3.2 on fedore coer 6 platform but I am getting the following errors after giving scons bin mode=release command :-

[root@bmel rosetta_source]# scons bin mode=release
scons: Reading SConscript files ...
svn: '.' is not a working copy

scons: warning: The build_dir keyword has been deprecated; use the variant_dir keyword instead.
File "/usr/local/rosetta-3.2/rosetta_source/SConscript", line 40, in

scons: warning: The build_dir keyword has been deprecated; use the variant_dir keyword instead.

Is there an increase in NMR functionality in 3.2? Although I saw nothing in the 3.2 documentation to suggest this, the 3.2 version of "relax -help" and "score_jd2 -help" now suggests a wide array of NMR-related options (see attachment with partial output from "relax -help". So, are there really new NMR-related tools in 3.2? Are those documented somewhere?

Stéphane

Hi I tried installing rosetta 3.2 on windows using cygwin and I have installed zlib while installing cygwin but I am getting the following error :-

End of stack trace
12353592 [main] python 5504 fork: child 3364 - died waiting for dll loading, err
no 11
scons: *** [build/src/release/cygwin/1.7/32/x86/gcc/utility.dll] Resource tempor
arily unavailable
scons: building terminated because of errors.

What could have gone wrong ??
=======================================================================

I again tried using the same command and I got the following error :

Hi,

I would like to perform sequence design of the peptide bound to the protein. I am using PyRosetta and PackRotamersMover function. I would like to ask if it is possible to use BINDING ENERGY of peptide instead of TOTAL ENERGY of complex as a criterion for accepting/rejecting given mutation during Monte Carlo simulation?

Thanks!
Agnieszka