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PyRosetta - General

Topic / Topic startersort descending Replies Views Last post
Normal topic Movers for unspecified DoF
by tfobe » Wed, 2019-04-17 17:30
2
676 by tfobe
Mon, 2019-05-20 16:05
Normal topic mutate_residue not working
by lanselibai » Mon, 2014-08-11 03:55
7
5,608 by lanselibai
Sun, 2014-08-17 07:30
Normal topic mutate_residue doesn't mutate
by dsim » Wed, 2015-03-18 02:32
6
4,699 by rmoretti
Fri, 2016-04-29 09:48
Normal topic Muting output in pyrosetta
by SenyorDrew » Mon, 2017-08-14 08:13
6
3,180 by SenyorDrew
Tue, 2017-08-15 07:41
Normal topic Namespace PyRosetta Build for Windows?
by protos_heis » Sat, 2015-08-15 10:49
3
2,705 by Sergey
Wed, 2015-08-19 15:47
Normal topic Need help figuring out the meaning and cause of an error
by AleksanderK » Fri, 2019-05-03 11:02
1
569 by rmoretti
Thu, 2019-05-09 14:32
Normal topic Neutralize the C and N termini
by rosettauser » Mon, 2011-07-25 07:24
1
1,699 by smlewis
Mon, 2014-04-21 06:47
Normal topic New files for loop modeling
by Victor » Fri, 2012-02-03 14:36
0
1,072 by Victor
Mon, 2014-04-21 06:47
Normal topic New Python 3.7
by ac.research » Wed, 2018-08-15 07:00
5
2,170 by MNP1986
Mon, 2018-12-03 04:02
Normal topic New Windows build is available for download
by Sergey » Fri, 2014-07-18 13:50
2
2,438 by ajasja
Fri, 2014-08-22 08:32
Normal topic newbie question re pose syntax
by Amy F » Mon, 2019-04-15 12:50
10
2,651 by jadolfbr
Wed, 2019-04-24 10:12
Normal topic No pdb output file when running ab initio modeling
by bunyaviridae » Thu, 2013-06-20 01:33
1
1,853 by rmoretti
Mon, 2014-04-21 06:48
Normal topic non canonical aa mutations/force fields/pyrosetta
by Anouk » Wed, 2013-06-19 01:51
12
8,695 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Non-standard amino acids
by mark.wilson » Mon, 2010-08-02 12:13
0
1,252 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic Nonstandard residue parameters fail
by lah435 » Wed, 2014-08-06 17:53
2
2,712 by lah435
Mon, 2014-08-18 17:23
Normal topic Noob question about optimizing a pose
by AleksanderK » Fri, 2019-04-26 10:49
3
866 by AleksanderK
Fri, 2019-05-03 10:57
Normal topic number of residues in a specific chain
by felipet » Mon, 2015-03-09 09:30
1
1,686 by jadolfbr
Mon, 2015-03-09 12:54
Normal topic option removal/KIC
by jadolfbr » Thu, 2012-02-02 16:35
6
3,340 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Output different favored solutions with PackRotamersMover design
by xfliu » Fri, 2012-07-13 06:23
5
4,102 by smlewis
Mon, 2014-04-21 06:47
Normal topic Output several poses in a silent file
by SenyorDrew » Tue, 2018-03-20 07:12
1
832 by Martin Floor
Tue, 2018-12-11 05:43
Normal topic Packing Fraction of atoms in a closed loop or turn
by bharat_46010 » Fri, 2013-08-09 17:40
1
2,010 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Parallel processing?
by mark.wilson » Mon, 2010-07-26 15:12
6
7,823 by msellers
Mon, 2014-04-21 06:47
Normal topic Parsing XML tags using pyrosetta
by rbehan » Mon, 2015-10-19 06:37
1
1,550 by rmoretti
Mon, 2015-10-19 08:25
Normal topic Passing a dictionary from pyrosetta to rosetta
by SenyorDrew » Mon, 2017-11-13 11:33
1
780 by rmoretti
Fri, 2017-12-01 10:10
Normal topic Peptide design
by AOK » Thu, 2011-02-03 11:35
3
3,106 by smlewis
Mon, 2014-04-21 06:47
Normal topic pose.replace_residue() & incorrect scoring
by msun » Tue, 2015-10-06 10:51
3
2,426 by rmoretti
Wed, 2015-10-07 16:35
Normal topic pose_from_pdb gives RuntimeError: unidentifiable C++ exception?
by cossio » Thu, 2014-11-27 14:43
1
2,010 by cossio
Fri, 2014-11-28 05:05
Normal topic pose_from_rcsb error
by criss.hartzell » Wed, 2020-04-22 15:12
1
350 by matteoferla
Thu, 2020-04-30 12:04
Normal topic pose_from_sequence with modified residue
by nawsad » Wed, 2014-06-25 02:59
4
3,318 by nawsad
Sun, 2014-07-13 00:49
Normal topic preparation the fragment files for mutants
by Victor » Wed, 2012-02-22 11:04
3
2,101 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem about Pyrosetta installation win7
by sprinkle166 » Mon, 2017-09-04 20:15
5
2,494 by sprinkle166
Fri, 2017-09-08 12:57
Normal topic Problem with sending individual energy terms using PyMOL Mover
by jadolfbr » Fri, 2011-12-23 10:54
2
1,896 by Sergey
Mon, 2014-04-21 06:47
Normal topic Problems when inserting spin-label R1A
by ajasja » Fri, 2014-06-27 04:14
2
2,108 by ajasja
Thu, 2014-07-03 05:36
Normal topic Problems with building bindings.
by AndrewBworth » Thu, 2010-02-04 17:26
0
1,282 by AndrewBworth
Mon, 2014-04-21 06:47
Normal topic problems with low-resolution loop refinemet (LoopMover_Perturb_CCD)
by aloctavodia » Thu, 2012-07-26 06:51
9
5,327 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Problems with SmoothFragmentMover
by epalovcak » Wed, 2013-10-02 09:20
3
3,000 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Protein docking with PyRosetta Error!
by Apiwat » Sat, 2014-01-11 23:32
3
3,271 by Apiwat
Mon, 2014-04-21 06:48
Normal topic protein structure prediction
by ravi1709 » Thu, 2011-07-28 00:05
1
1,722 by smlewis
Mon, 2014-04-21 06:47
Normal topic PSIPRED secondary structure prediction in PyRosetta
by ac.research » Fri, 2017-09-01 22:56
1
1,351 by rmoretti
Mon, 2017-09-04 09:52
Normal topic PyMOL did not work from a remote machine with PyRosetta
by Jeremy1990 » Sat, 2015-08-08 21:25
1
1,583 by rmoretti
Wed, 2015-08-12 10:29
Normal topic PyMOL Update
by ac.research » Tue, 2018-04-10 22:07
6
1,943 by Sergey
Tue, 2018-05-15 11:20
Normal topic PyMOLMover object has no attribute 'link'
by nleroy » Mon, 2019-07-22 07:51
0
360 by nleroy
Mon, 2019-07-22 07:51
Normal topic pymover = PyMOL_Mover() hangs IPython?
by cossio » Fri, 2015-04-10 07:38
4
3,160 by cossio
Wed, 2015-04-15 12:31
Normal topic Pypy not working, python works...
by MarkW » Thu, 2015-03-05 05:15
4
4,933 by MarkW
Mon, 2015-08-24 04:43
Normal topic PyRosetta + PyMol
by reve_etrange » Mon, 2009-11-23 16:44
3
3,052 by reve_etrange
Mon, 2014-04-21 06:47
Normal topic PyRosetta 1.1 for Windows?
by sylvia » Tue, 2010-02-09 16:06
0
989 by sylvia
Mon, 2014-04-21 06:47
Normal topic Pyrosetta 2.0 - Dunbrak library binary not loading - strange repacking score
by msellers » Wed, 2011-05-11 06:24
3
2,865 by smlewis
Mon, 2014-04-21 06:47
Normal topic PyRosetta 2.0 Beta Strand Build
by Qulprit » Tue, 2011-02-08 11:30
1
6,389 by weitzner
Mon, 2014-04-21 06:47
Normal topic PyRosetta AbInitio Folding protocol
by batch2k » Tue, 2009-12-15 11:09
7
8,724 by jadolfbr
Thu, 2015-02-05 10:32
Normal topic PyRosetta coding subtleties
by lah435 » Wed, 2013-03-27 02:59
2
3,250 by Sergey
Mon, 2014-04-21 06:47
Normal topic Pyrosetta energy function
by somayyehzangooei » Mon, 2011-05-09 08:20
6
5,104 by smlewis
Mon, 2014-04-21 06:47
Normal topic PyRosetta FastDesign
by ac.research » Tue, 2017-07-04 10:23
9
4,784 by ac.research
Wed, 2017-07-05 16:59
Normal topic PyRosetta Global Docking
by ac.research » Sat, 2017-08-26 03:31
2
1,523 by Sergey
Thu, 2017-08-31 04:39
Normal topic Pyrosetta imported after rdkit
by matteoferla » Sun, 2020-03-01 02:38
0
300 by matteoferla
Sun, 2020-03-01 02:38
Normal topic PyRosetta license
by AOK » Fri, 2011-11-11 01:20
1
1,506 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic PyRosetta memory footprint
by LiorZ » Thu, 2016-06-16 04:36
3
2,231 by LiorZ
Fri, 2016-06-17 08:20
Normal topic PyRosetta on a HPC
by ac.research » Thu, 2019-03-14 02:00
1
605 by rmoretti
Wed, 2019-07-10 10:17
Normal topic Pyrosetta protocol to move protein-peptide docked complex closer to active site.
by eduardoftoliveira » Fri, 2018-06-29 02:50
0
946 by eduardoftoliveira
Fri, 2018-06-29 03:46
Normal topic PyRosetta surface docking not working
by cgautier » Mon, 2015-03-16 05:45
6
5,018 by Sergey
Wed, 2015-03-18 11:22
Normal topic PyRosetta v1.1
by jadolfbr » Tue, 2010-02-09 08:02
0
992 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic PyRosetta version 2.011 for Mac/Linux is ready to download!
by Sergey » Mon, 2011-11-21 08:51
0
1,186 by Sergey
Mon, 2014-04-21 06:47
Normal topic Pyrosetta2
by bharat_46010 » Mon, 2011-02-28 05:00
1
1,686 by Sergey
Mon, 2014-04-21 06:47
Normal topic Python 2.6
by AndrewBworth » Mon, 2010-02-01 18:49
2
1,943 by AlexI
Mon, 2014-04-21 06:47
Normal topic Python3.8 release for Mac download is a dead link
by noahC_noahDo » Fri, 2020-06-26 18:20
0
184 by noahC_noahDo
Fri, 2020-06-26 18:20
Normal topic Quadratic Function for Distance Constraints?
by protos_heis » Mon, 2014-01-27 06:21
4
2,762 by protos_heis
Mon, 2014-04-21 06:48
Normal topic Question about gradient of energy function
by kyler » Tue, 2017-08-22 14:09
7
3,500 by rmoretti
Tue, 2017-09-05 10:05
Normal topic Question about the error when using pyrosetta.distributed.io
by cuiyoutian » Sun, 2019-05-19 00:54
1
594 by rmoretti
Mon, 2019-06-24 12:54
Normal topic Question Regarding Usage of Specific Rosetta Tools in PyRosetta
by jurkm » Thu, 2010-07-22 23:54
0
1,102 by jurkm
Mon, 2014-04-21 06:47
Normal topic Questions on rotamer-rotamer energies
by pachecoj » Fri, 2013-07-26 05:01
3
3,074 by rmoretti
Mon, 2014-04-21 06:48
Normal topic read parameters of metal ions
by Stefan » Tue, 2011-07-19 08:38
2
2,769 by Stefan
Mon, 2014-04-21 06:47
Normal topic Reading constraints from a file
by lah435 » Wed, 2017-06-14 18:56
2
1,529 by rmoretti
Fri, 2017-06-16 07:22
Normal topic Reading poses from silent file that need a params file
by Martin Floor » Mon, 2018-08-13 12:25
2
1,430 by Martin Floor
Mon, 2018-08-27 10:51
Normal topic Reducing PyRosetta memory usage
by ajasja » Fri, 2014-10-03 01:51
4
3,761 by Sergey
Fri, 2015-04-10 11:25
Normal topic Regarding the Documentation of Rosetta and PyRosetta
by jai_INMAS » Tue, 2013-10-22 23:41
3
2,634 by jai_INMAS
Mon, 2014-04-21 06:48
Normal topic Relax with constraints
by yijietseng » Tue, 2019-05-07 11:16
2
998 by yijietseng
Wed, 2019-05-22 09:54
Normal topic Relax with constraints in PyRosetta
by ac.research » Tue, 2017-11-21 10:17
1
1,608 by rmoretti
Sat, 2017-12-09 01:50
Normal topic Relaxing experimental structure
by aloctavodia » Thu, 2016-09-29 03:46
8
4,718 by aloctavodia
Thu, 2016-10-06 03:29
Normal topic RemodelMover() and the blueprint file
by ac.research » Wed, 2018-06-27 03:55
1
869 by rmoretti
Sat, 2018-06-30 02:38
Normal topic Repeat study
by thomashrabe » Tue, 2017-06-20 11:21
2
1,231 by parmef
Sat, 2017-06-24 03:18
Normal topic Replace the rotamer of a particular residue in a pose
by AyushGoyal » Wed, 2014-04-02 23:45
1
1,432 by rmoretti
Thu, 2014-04-03 07:27
Normal topic Resfile Error
by ac.research » Wed, 2019-07-17 13:25
3
1,170 by vmulligan
Fri, 2019-07-26 15:08
Normal topic Residue is not compatible with cutpoints
by iGemBoulder » Thu, 2019-06-06 08:57
2
768 by iGemBoulder
Tue, 2019-06-11 08:36
Normal topic residue selection / secondary structure constraints
by sharang » Thu, 2010-08-05 10:16
0
1,254 by sharang
Mon, 2014-04-21 06:47
Normal topic Residue.set_chi() does not update internal state?
by ajasja » Wed, 2014-09-24 09:19
5
4,965 by rmoretti
Mon, 2014-10-06 14:37
Normal topic Rigid body perturbation while docking
by wajidarshad » Fri, 2015-12-11 02:14
1
1,586 by rmoretti
Wed, 2015-12-16 11:25
Normal topic rmsd and Lrmsd in loop modeling
by Victor » Tue, 2012-01-24 09:52
3
2,983 by Victor
Mon, 2014-04-21 06:47
Normal topic RNA docking
by eschulz » Tue, 2012-02-28 03:04
1
3,244 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta Docking server
by hourosetta » Fri, 2011-02-11 08:36
1
2,518 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta get_fa_scorefxn()
by israeldesta » Thu, 2019-10-31 10:18
3
1,130 by jadolfbr
Thu, 2019-11-14 15:33
Normal topic Rosetta score vs Experiment
by thorx020 » Tue, 2012-09-04 12:38
3
4,851 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta.core.pack.pack_rotamers_setup(pose, score_fxn, task_design, rotsets) not working
by tschiex » Sun, 2017-11-05 08:29
0
670 by tschiex
Sun, 2017-11-05 08:29
Normal topic RosettaDesign Result Evaluation
by ac.research » Tue, 2018-06-05 18:45
2
1,132 by ac.research
Wed, 2018-07-18 03:50
Normal topic RosettaHoles for PyRosetta - Void Detection/Scoring
by ac.research » Sat, 2017-07-01 11:28
5
2,259 by rmoretti
Thu, 2017-07-06 12:49
Normal topic RosettaModel blueprint for PyRosetta
by bbrown11 » Tue, 2015-03-03 13:53
2
2,193 by bbrown11
Wed, 2015-03-04 18:49
Normal topic Rotamer bin vector from chi angles of a residue in pose not found in Dunbrack rotamer library
by AyushGoyal » Mon, 2014-02-24 22:18
3
3,469 by rmoretti
Wed, 2014-02-26 09:40
Normal topic Rotamer information from pose
by AyushGoyal » Wed, 2014-01-15 14:37
7
6,143 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Rotamer Libraries in Pyrosetta
by protos_heis » Fri, 2013-01-18 12:02
8
6,900 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic RuntimeError: unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:16
1
2,105 by rmoretti
Tue, 2015-10-27 08:46
Normal topic Sample dihedral database
by tiagogomes89 » Mon, 2018-03-12 04:28
2
975 by tiagogomes89
Mon, 2018-03-12 10:01
Normal topic SASA of pose
by ac.research » Mon, 2017-06-26 03:55
2
1,612 by ac.research
Fri, 2017-06-30 05:44
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