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Rosetta 3 - Applications
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Ligand params file proton_chi parameters by staciekim » Thu, 2017-08-17 14:50 |
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3,108 |
by staciekim Thu, 2017-08-17 17:06 |
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RosettaAntibody core.pose.util error by rishibedi » Fri, 2018-10-05 01:31 |
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2,728 |
by esozdemir Thu, 2019-06-13 12:19 |
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How to add additional rounds of design and optimization in Rosetta scripts? by Nicole Deng » Tue, 2020-11-03 19:05 |
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1,582 |
by Nicole Deng Thu, 2020-11-05 03:04 |
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ProteinLigandInterfaceUpweighter for protein-protein interactions? by ahonegger » Mon, 2014-06-02 06:53 |
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3,374 |
by ahonegger Fri, 2014-06-06 09:31 |
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cartesian_ddg error: "Assertion `files.size() == 1` failed." by cossio » Fri, 2018-05-11 09:59 |
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3,355 |
by cossio Fri, 2018-05-18 09:51 |
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Question about fastsaxs and saxs_score by orionshih » Thu, 2019-06-13 02:30 |
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2,005 |
by orionshih Wed, 2019-06-26 03:54 |
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cross correlation calculation by jingwei xu » Sat, 2016-04-16 19:11 |
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2,795 |
by jingwei xu Wed, 2016-05-04 23:26 |
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Segmentation Fault in Fragment picking by ashu4487 » Fri, 2018-07-06 20:47 |
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3,309 |
by ashu4487 Mon, 2018-07-16 19:24 |
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De novo structure building with medium resolution map by BuddySphinx » Tue, 2019-07-02 09:07 |
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2,099 |
by BuddySphinx Tue, 2019-07-02 12:03 |
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ERROR: Specified chain does not exist. by ajaniharesh » Fri, 2019-04-05 11:14 |
2 |
2,747 |
by ajaniharesh Tue, 2019-04-09 06:53 |
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How to use Rosetta to DISCARD a protein-protein docking interface? by cossio » Tue, 2015-05-26 06:24 |
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3,290 |
by rmoretti Sat, 2015-07-11 13:38 |
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RMSD calculation by hamedkhakzad » Tue, 2016-09-13 04:56 |
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4,239 |
by rmoretti Wed, 2016-09-14 02:05 |
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"Make_fragments.pl" can't connect to dependencies links by Corvin » Wed, 2019-09-04 23:54 |
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2,280 |
by Corvin Thu, 2019-10-10 01:12 |
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setup_RosettaCM.py by browns02 » Mon, 2021-06-28 07:13 |
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1,390 |
by browns02 Tue, 2021-06-29 11:41 |
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Multiple Chain Comparative Modeling - End result is not even close to template structure by eskici » Wed, 2012-08-29 08:09 |
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3,825 |
by eskici Mon, 2014-04-21 06:47 |
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Remodel with residue constraints by sn » Fri, 2017-03-10 01:40 |
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2,498 |
by rmoretti Mon, 2017-03-13 08:01 |
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problems with generating the params file by dyu » Thu, 2017-09-28 13:34 |
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2,356 |
by dyu Thu, 2017-09-28 18:54 |
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Error with Formatdb of legacy blast when running "install_dependencies.pl"? by Danielsebas » Mon, 2019-09-16 09:30 |
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1,888 |
by Danielsebas Tue, 2019-09-17 01:03 |
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symmetric fixbb design with design_hpatch by sdh_h » Sat, 2013-02-02 01:48 |
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2,960 |
by ronj Mon, 2014-04-21 06:47 |
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reporting bugs? (erraser in rosetta 3.10) by meyer » Fri, 2018-12-14 09:40 |
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2,068 |
by everyday847 Fri, 2019-03-29 13:13 |
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Membrane protein protocol on PyRosetta by jlapin » Sat, 2018-07-28 14:41 |
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2,268 |
by jlapin Wed, 2018-08-01 07:15 |
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Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking) by snorp » Mon, 2014-04-14 13:01 |
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3,903 |
by jadolfbr Mon, 2014-05-12 10:41 |
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Imitating induced fit protocol in SymDock2 without any symmetry constraints by chenna » Fri, 2020-02-14 01:35 |
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1,995 |
by chenna Wed, 2020-03-04 03:24 |
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How to add constrains to FlexPepDocking? by MajorID » Thu, 2011-06-02 11:00 |
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3,327 |
by MajorID Mon, 2014-04-21 06:47 |
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change number of output pose files written out (default=50) in ligand docking XML script by hdelrisco » Fri, 2019-10-18 13:50 |
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1,864 |
by hdelrisco Fri, 2019-10-18 17:16 |
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"core.kinematics.FoldTree" error upon running RAbD by Sunyp_IM » Fri, 2020-06-26 17:27 |
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1,830 |
by Sunyp_IM Fri, 2020-06-26 20:57 |
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small ligand docking in Ubuntu 20.04, please help by guowuchen » Sun, 2022-03-06 18:12 |
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1,683 |
by guowuchen Mon, 2022-03-07 23:34 |
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JobDistributor problem in antibody modeling by Wizard » Wed, 2015-04-22 00:35 |
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3,467 |
by Wizard Sun, 2015-04-26 22:36 |
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ReplicaDock 2.0 Native vs Input Structure Flags Confusion by katherinemccoy » Tue, 2022-12-27 06:42 |
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4,795 |
by katherinemccoy Tue, 2023-02-28 18:19 |
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Space Swap!!! by jrcf » Sun, 2016-02-14 11:43 |
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2,724 |
by jrcf Mon, 2016-02-15 17:59 |
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nstruct vs. trials? by chrisHKL » Mon, 2020-03-02 13:22 |
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1,772 |
by chrisHKL Wed, 2020-03-04 10:49 |
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RIFdocking：Unable to locate database file chemical/residue_type_sets/fa_standard/residue_types/ by sia » Tue, 2022-08-02 20:06 |
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1,894 |
by SeongRyeong Go Mon, 2022-08-15 18:31 |
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RosettaScripts - SetupNCS mover by felipet » Fri, 2016-03-25 12:42 |
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2,796 |
by rmoretti Fri, 2016-04-29 08:26 |
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Ligand Docking with RosettaScripts gives a ParsedProtocol exception by brspurri » Sun, 2017-05-14 17:51 |
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3,076 |
by brspurri Mon, 2017-05-15 11:48 |
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Any progress on getting intermediate structures during a design? by broomsday » Mon, 2020-03-16 06:46 |
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1,939 |
by vmulligan Tue, 2020-03-17 11:35 |
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flexpepdock flag "-packing:unboundrot" by gw » Mon, 2011-07-11 12:23 |
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4,140 |
by Ora Schueler-Furman Mon, 2014-04-21 06:47 |
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do mpi apps share memory? by fred » Thu, 2014-01-23 11:49 |
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3,414 |
by fred Mon, 2014-04-21 06:48 |
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Generate fragment file on my computer by jrcf » Mon, 2015-09-21 15:41 |
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4,184 |
by jrcf Mon, 2015-10-05 21:32 |
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antibody H3 modelling protocol for nanobody gives "[ ERROR ] Inaccurate G!" messages by AlfredoKCL » Sun, 2021-02-28 16:42 |
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1,489 |
by AlfredoKCL Mon, 2021-03-01 04:07 |
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Ways to improve AbRelax performance? by Corvin » Tue, 2022-04-19 06:10 |
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2,936 |
by Corvin Thu, 2022-04-21 00:50 |
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cartesian_ddg output by cossio » Thu, 2018-10-11 14:58 |
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3,704 |
by cossio Fri, 2018-10-12 04:43 |
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"make" error in "pdb2vall/structure_profile_scripts/DEPTH-CLONE-2.8.7" by Danielsebas » Mon, 2019-09-02 08:14 |
2 |
2,084 |
by Danielsebas Sun, 2019-09-08 02:08 |
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St13runtime_error in Rosetta ligand docking by syntekabio2019 » Thu, 2023-02-09 18:18 |
2 |
3,087 |
by syntekabio2019 Sun, 2023-02-19 18:39 |
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Error in using “loopmodel” for selective rebuilding by sushreet » Mon, 2014-07-14 11:57 |
2 |
2,956 |
by sushreet Tue, 2014-08-26 13:02 |
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Floppy tail: sidechain mutation during calculation by syoifczeri » Mon, 2015-03-09 19:01 |
2 |
3,181 |
by syoifczeri Tue, 2015-03-10 23:08 |
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Modeling more than one protein loop at the same time by hzhekova » Mon, 2018-01-15 14:03 |
2 |
3,076 |
by hzhekova Tue, 2018-01-16 10:31 |
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RosettaLigand ERROR: Error in core::conformation::check_good_cutpoint_neighbour() by sam_dc » Thu, 2021-03-25 09:32 |
2 |
2,422 |
by sam_dc Mon, 2021-04-12 07:24 |
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clustering by ays » Tue, 2014-09-30 08:26 |
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3,378 |
by rmoretti Mon, 2014-10-06 16:00 |
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How to make new VALL database? by Danielsebas » Sun, 2019-09-08 02:16 |
2 |
2,577 |
by Danielsebas Wed, 2019-09-11 00:44 |
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RMS determination using Rosetta 3.3 by adraney » Thu, 2011-12-08 12:44 |
2 |
3,380 |
by mark.wilson Mon, 2014-04-21 06:47 |
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rosetta_cm segfault by browns02 » Fri, 2021-07-09 13:35 |
2 |
1,431 |
by rmoretti Fri, 2021-07-09 15:05 |
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RosettaScripts - FastRelax loops by jtmacd » Wed, 2015-11-18 09:32 |
2 |
4,121 |
by jtmacd Fri, 2015-12-04 03:11 |
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Relax structure with metal cofactors by h_trasatti » Tue, 2017-03-14 14:04 |
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3,108 |
by rmoretti Tue, 2017-03-28 08:51 |
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Choosing weight file for interface design? by johnnytam100 » Tue, 2019-05-07 00:47 |
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2,301 |
by johnnytam100 Tue, 2019-05-21 22:33 |
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how to know the precedure of solving a actural bio problem? like interface design? by qq7678500549 » Thu, 2020-08-06 18:45 |
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1,600 |
by qq7678500549 Sun, 2020-08-09 18:59 |
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ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42 by yliang20 » Wed, 2022-06-15 22:22 |
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1,407 |
by jxw Wed, 2023-10-11 10:04 |
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kinematic loop modeling multiple input: possible? by a_s_a » Thu, 2011-05-12 09:33 |
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3,384 |
by a_s_a Mon, 2014-04-21 06:47 |
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MaxSub and MaxSub2.0 by JadAbbass » Tue, 2013-10-15 13:36 |
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3,688 |
by JadAbbass Mon, 2014-04-21 06:48 |
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Including ab-initio predicted model in fragment library generation by ashu4487 » Thu, 2016-12-08 17:49 |
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2,470 |
by ashu4487 Sun, 2016-12-11 19:03 |
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Abinitio protocol and X-Ray diffraction data by allan.ferrari » Wed, 2015-08-12 12:49 |
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3,041 |
by allan.ferrari Fri, 2015-08-28 12:07 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Fri, 2020-06-19 08:58 |
2 |
1,771 |
by Kotimedidhi Mon, 2020-06-22 16:19 |
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Generate fragment locally by deltag » Wed, 2012-02-01 06:26 |
2 |
3,526 |
by deltag Mon, 2014-04-21 06:47 |
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Problems running pmut in parallel with openmpi by RMJ » Fri, 2012-09-21 06:25 |
2 |
4,056 |
by RMJ Mon, 2014-04-21 06:47 |
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ddG filter gives deltaG calculation number? by jarod » Tue, 2013-05-28 23:43 |
2 |
3,994 |
by jarod Mon, 2014-04-21 06:47 |
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Reproducing the exact result using information from previos run by nawsad » Thu, 2013-03-14 12:05 |
2 |
2,683 |
by nawsad Mon, 2014-04-21 06:47 |
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FlexPepDock and total score problem by tkellici » Fri, 2014-01-17 06:07 |
2 |
3,317 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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OptimizeMembranePositionMover - This element is not expected by bjharris » Wed, 2020-07-01 23:21 |
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1,964 |
by bjharris Thu, 2020-07-02 11:09 |
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How do I change the default Compiler for Rosetta？ by pagumaaaaa » Wed, 2022-03-16 00:23 |
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1,583 |
by pagumaaaaa Thu, 2022-03-24 22:40 |
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Failing Fragment libraries us Chemical shifts with Robettaa by kalabharath » Tue, 2015-04-28 19:33 |
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2,801 |
by kalabharath Wed, 2015-04-29 16:21 |
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Modelling temperature dependent RNA structures by tuleshwori » Tue, 2020-05-19 01:16 |
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1,754 |
by tuleshwori Thu, 2020-05-21 02:08 |
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Calculate_protein_protein_ddg by kamau » Fri, 2015-01-30 11:27 |
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3,071 |
by deepanshuiitb Thu, 2015-03-19 19:14 |
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RosettaScript Segmentation Fault (crash log attached) by chrisHKL » Thu, 2020-03-05 07:21 |
2 |
2,483 |
by chrisHKL Thu, 2020-03-05 09:11 |
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Disulfide Bonds in Loop Modeling by code_Monkey » Mon, 2021-05-03 08:27 |
2 |
1,655 |
by code_Monkey Thu, 2021-05-06 07:14 |
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Fastrelax problem by Pernille » Fri, 2014-06-20 00:16 |
2 |
3,985 |
by Pernille Thu, 2014-07-03 07:21 |
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Filter ddg_filter reports failure! by deepanshuiitb » Fri, 2015-02-27 18:19 |
2 |
3,089 |
by deepanshuiitb Sat, 2015-02-28 19:24 |
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-loops:fa_input not found in command line top-level context by swarekwood » Thu, 2017-08-24 03:15 |
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2,670 |
by swarekwood Fri, 2017-08-25 05:08 |
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ligand docking with MPI by Ruska322 » Wed, 2019-09-04 03:47 |
2 |
1,831 |
by Ruska322 Fri, 2019-09-06 07:13 |
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ligand_docking ligand preparation by Alison_Yajie » Thu, 2020-05-21 10:21 |
2 |
1,676 |
by Alison_Yajie Wed, 2020-06-24 12:38 |
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does the loop kinetic support MPI now? by albumns » Fri, 2012-10-26 06:31 |
2 |
2,593 |
by smlewis Mon, 2014-04-21 06:47 |
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How to Perform point mutations with NCAA by Subhrodeep Saha » Tue, 2021-06-22 02:05 |
2 |
2,100 |
by dnamkr Fri, 2022-04-22 17:00 |
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high-res docking by tfliu » Mon, 2013-07-15 02:49 |
2 |
3,372 |
by tfliu Mon, 2014-04-21 06:48 |
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error extracting PDB from silent from AbinitioRelax with constraints by attesor » Wed, 2017-06-14 04:15 |
2 |
2,413 |
by smlewis Fri, 2017-06-16 07:35 |
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RosettaRemodel by gw » Wed, 2011-09-14 13:24 |
2 |
3,688 |
by smlewis Mon, 2014-04-21 06:47 |
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very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
2 |
3,286 |
by attesor Tue, 2015-11-17 07:36 |
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Ensemble docking causes segmentation fault 11 by David Weis » Mon, 2017-03-06 14:30 |
2 |
3,010 |
by David Weis Mon, 2017-03-13 06:40 |
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Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
2 |
2,061 |
by Martin Floor Tue, 2020-01-21 11:15 |
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remove membrane for RosettaMPdock by lluoto » Wed, 2023-12-06 06:22 |
2 |
535 |
by lluoto Wed, 2024-02-21 17:39 |
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residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
2 |
3,084 |
by Pernille Wed, 2014-10-08 10:41 |
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docking with constraints and flexible bb by mintseris » Mon, 2015-06-22 09:07 |
2 |
3,193 |
by mintseris Wed, 2015-06-24 22:04 |
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Docking with constraint by Hongtham » Sat, 2014-12-27 09:56 |
2 |
2,886 |
by rmoretti Fri, 2015-01-02 09:43 |
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Docking-I_sc values do not correlate by jlawrie » Wed, 2020-08-12 08:08 |
2 |
1,805 |
by jlawrie Wed, 2020-08-12 08:57 |
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Ab-initio modeling on part of the protein by xiayanlawrence » Thu, 2013-12-19 07:45 |
1 |
3,502 |
by rmoretti Mon, 2014-04-21 06:48 |
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latest version of rosetta unable to build models by pramod » Mon, 2014-11-03 11:31 |
1 |
2,909 |
by rmoretti Tue, 2014-11-04 10:33 |
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RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist. by kamau » Fri, 2017-12-01 08:42 |
1 |
1,760 |
by kamau Wed, 2017-12-13 14:31 |
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ERROR: ResidueType::add_ring: Requested atoms don't exist in this ResidueType! by walidabualafia » Thu, 2023-07-20 09:44 |
1 |
441 |
by rmoretti Thu, 2023-07-20 10:08 |
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Difference between relax and mimimize_with_cst by basvandenberg » Thu, 2012-02-09 00:16 |
1 |
2,909 |
by rmoretti Mon, 2014-04-21 06:47 |
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Adding 'virtual' residues for N- and C-terminal optimisation by Derek Smith » Thu, 2014-08-14 23:18 |
1 |
2,375 |
by jadolfbr Fri, 2014-10-31 09:00 |
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Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo by zharmad » Fri, 2019-08-23 01:16 |
1 |
1,447 |
by everyday847 Fri, 2019-08-23 04:08 |
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Protein-DNA Docking using RosettaScripts? by brspurri » Fri, 2013-06-07 09:06 |
1 |
4,547 |
by rmoretti Mon, 2014-04-21 06:48 |
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RosettaCM/hybridize by kywei » Wed, 2021-04-28 09:56 |
1 |
1,084 |
by vmulligan Wed, 2021-04-28 12:59 |
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