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Rosetta 3 - Applications

Topic / Topic startersort descending Replies Views Last post
Normal topic problems in InterfaceAnalyzer analysis
by chenchaozhao » Fri, 2011-12-02 23:36
9
5,729 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM
by ajkal » Fri, 2017-04-14 08:44
3
2,141 by rmoretti
Thu, 2017-04-20 13:59
Normal topic Problems running pmut in parallel with openmpi
by RMJ » Fri, 2012-09-21 06:25
2
2,954 by RMJ
Mon, 2014-04-21 06:47
Normal topic Problems when running Rosetta VIP with cofactors
by Basantab » Fri, 2013-04-26 13:31
14
10,523 by Basantab
Mon, 2014-04-21 06:47
Normal topic Problems with always_constrained_relax_script
by wsgosal » Wed, 2013-05-29 04:39
3
3,455 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Problems with fixbb in Rosetta 3.5
by mdidonato » Wed, 2014-06-04 13:56
2
1,761 by mdidonato
Wed, 2014-06-04 14:55
Normal topic problems with generating the params file
by dyu » Thu, 2017-09-28 13:34
2
1,264 by dyu
Thu, 2017-09-28 18:54
Normal topic Problems with Ligand Docking
by saxen » Fri, 2011-08-19 00:19
8
6,148 by glemmon
Mon, 2014-04-21 06:47
Normal topic Problems with ligand when running RosettaLigand
by Cat » Mon, 2013-05-20 15:58
5
4,545 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Problems with mpi version of antibody.linuxgccrelease
by Sunyp_IM » Thu, 2020-05-28 23:06
0
368 by Sunyp_IM
Thu, 2020-05-28 23:07
Normal topic profit program in antibody design
by tzhou » Tue, 2013-10-15 23:29
1
2,061 by rmoretti
Mon, 2014-04-21 06:48
Normal topic proline patching problem
by xun » Tue, 2012-01-03 11:15
3
2,680 by xun
Mon, 2014-04-21 06:47
Normal topic Protein Design
by ac.research » Wed, 2017-02-15 19:25
1
1,883 by cdbahl
Sat, 2017-02-18 13:02
Normal topic protein docking failed
by albumns » Thu, 2012-11-08 02:59
6
4,173 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Protein Ensemble RosettaLigand Docking
by sam_dc » Fri, 2021-03-26 10:18
2
180 by sam_dc
Fri, 2021-03-26 12:04
Normal topic protein interction design
by Negarsardar » Wed, 2019-05-15 12:01
1
654 by rmoretti
Wed, 2019-07-10 09:24
Normal topic protein interface design
by Negarsardar » Tue, 2019-05-28 07:04
2
930 by Negarsardar
Thu, 2019-05-30 23:46
Normal topic Protein Protein Docking with Constraints
by ajaniharesh » Wed, 2019-04-10 07:26
1
721 by rmoretti
Thu, 2019-05-09 15:40
Normal topic protein protein interaction design
by Negarsardar » Wed, 2019-05-15 06:13
3
1,449 by ajasja
Wed, 2019-05-15 15:40
Normal topic protein relax
by Alison_Yajie » Tue, 2020-05-19 08:29
0
280 by Alison_Yajie
Tue, 2020-05-19 08:29
Normal topic protein structure prediction using relax -- high-powered jobs
by rfieldhouse » Mon, 2011-05-30 18:29
7
5,444 by dimaio
Mon, 2014-04-21 06:47
Normal topic Protein-DNA Docking using RosettaScripts?
by brspurri » Fri, 2013-06-07 09:06
1
3,469 by rmoretti
Mon, 2014-04-21 06:48
Normal topic protein-ligand docking rescoring with interfaceAnalyzer
by syntekabio2019 » Sat, 2020-12-19 03:59
2
306 by syntekabio2019
Sun, 2020-12-20 21:10
Normal topic protein-protein docking
by cbala » Mon, 2011-04-18 09:15
1
1,879 by smlewis
Mon, 2014-04-21 06:47
Normal topic Protein-Protein Docking or Comparative Modeling
by Morrian_Lynn » Wed, 2020-01-29 19:01
1
516 by danpf
Fri, 2020-02-21 18:23
Normal topic protein-protein docking with flexible backbone
by tim » Fri, 2013-12-20 05:52
1
3,517 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Protein/Protein Ddg demo: How to write predicted mutant structures?
by cossio » Wed, 2015-11-04 20:14
1
1,200 by rmoretti
Tue, 2015-11-10 11:10
Normal topic ProteinInterfaceDesign algorithm questions
by tsztain » Mon, 2019-02-18 14:10
1
826 by rmoretti
Sun, 2019-08-25 19:15
Normal topic ProteinInterfaceMS
by rbjacob » Wed, 2018-10-24 11:31
1
673 by rmoretti
Wed, 2018-11-21 15:10
Normal topic ProteinLigandInterfaceUpweighter for protein-protein interactions?
by ahonegger » Mon, 2014-06-02 06:53
2
2,138 by ahonegger
Fri, 2014-06-06 09:31
Normal topic Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)?
by Corvin » Wed, 2020-12-16 04:58
0
195 by Corvin
Wed, 2020-12-30 09:21
Normal topic Question about fastsaxs and saxs_score
by orionshih » Thu, 2019-06-13 02:30
2
808 by orionshih
Wed, 2019-06-26 03:54
Normal topic Question on Designing with NCAAs
by salvatta » Mon, 2018-09-10 10:09
1
799 by rmoretti
Thu, 2018-09-20 09:23
Normal topic Question on restraining receptor symmetry when docking ligand
by subha » Fri, 2018-07-06 21:59
1
727 by rmoretti
Fri, 2018-08-03 08:16
Normal topic Question with rosetta AbPredict tutorial
by terabithia2011 » Mon, 2021-01-25 09:24
0
116 by terabithia2011
Mon, 2021-01-25 09:24
Normal topic Questions for "modeling_instructions.pdf" in "Homology or Loop Modelling"
by lanselibai » Sun, 2014-09-21 09:02
10
7,595 by lanselibai
Tue, 2014-10-07 02:58
Normal topic radius of gyration as constrain
by dhirajks » Sat, 2018-05-05 23:00
1
913 by smlewis
Mon, 2018-05-07 11:42
Normal topic Re: Glutamic acid protonation
by bharat_46010 » Fri, 2017-02-10 03:08
4
2,847 by rmoretti
Mon, 2017-02-20 08:09
Normal topic Rebuilding the structure from unknown residues
by sushreet » Mon, 2016-06-27 09:32
4
3,151 by rmoretti
Tue, 2016-07-12 09:35
Normal topic References where Rosetta is used to compute ddG of binding after mutation?
by cossio » Tue, 2015-03-17 05:13
1
1,898 by rmoretti
Wed, 2015-03-25 11:33
Normal topic refining crystal structure using phenix without CIF file
by banshee » Fri, 2016-09-09 01:14
2
1,987 by banshee
Mon, 2016-09-12 23:41
Normal topic regarding extracting silent file - renamed tag
by shrutikhare » Thu, 2014-04-17 01:19
2
1,744 by shrutikhare
Fri, 2014-04-18 23:11
Normal topic Regarding the efficiency of the new low resolution ligand-docking movement “Transform”.
by Martin Floor » Mon, 2017-05-15 09:19
2
1,526 by Martin Floor
Mon, 2017-05-15 11:13
Normal topic relax a protein with phosphorylated serine residue
by zruan » Thu, 2018-02-01 09:18
3
1,620 by rmoretti
Tue, 2018-02-06 09:47
Normal topic Relax a structure with >1 copy of a modified residue fails [Solved]
by franfdez » Wed, 2012-02-08 00:47
6
4,555 by franfdez
Mon, 2014-04-21 06:47
Normal topic relax and movemap
by Alison_Yajie » Wed, 2020-05-20 21:27
3
753 by smlewis
Thu, 2020-05-21 21:05
Normal topic Relax both peptide and ligands
by matteoferla » Thu, 2018-09-13 03:11
3
1,236 by smlewis
Fri, 2018-09-14 10:34
Normal topic relax constraints not minimized
by m_grisewood » Fri, 2012-08-10 08:31
2
2,681 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic Relax is resulting in a Segmentation Fault
by brspurri » Thu, 2017-08-24 18:46
3
2,042 by brspurri
Sat, 2017-08-26 07:08
Normal topic relax job failed
by albumns » Sat, 2014-07-26 00:21
1
1,426 by rmoretti
Sun, 2014-07-27 10:48
Normal topic Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2
by AJVincelli » Sat, 2018-07-14 13:14
1
990 by AJVincelli
Sun, 2018-11-25 11:29
Normal topic Relax structure with metal cofactors
by h_trasatti » Tue, 2017-03-14 14:04
2
1,796 by rmoretti
Tue, 2017-03-28 08:51
Normal topic relax VS. backrub
by jiongzhang » Mon, 2012-07-02 14:52
1
1,795 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax with a ligand is messing up the coordinates of the ligand
by brspurri » Sat, 2015-01-24 12:39
1
1,922 by rmoretti
Mon, 2015-01-26 12:15
Normal topic Relax with multiple small molecules
by jharamesh » Sun, 2019-05-26 19:34
1
734 by rmoretti
Mon, 2019-06-24 15:19
Normal topic Relax with protein+complex
by Prasanth Kumar » Wed, 2013-05-08 23:16
4
3,747 by Prasanth Kumar
Mon, 2014-04-21 06:47
Normal topic Relax with RDC data gives segmentation fault
by sn » Mon, 2018-07-23 11:39
1
785 by rmoretti
Fri, 2018-08-03 07:54
Normal topic relax with resfile
by gw » Fri, 2011-08-05 10:57
3
4,492 by nannemdp
Mon, 2014-04-21 06:47
Normal topic relax.linuxgccrelease in multiple processors
by jpfuenzalidawx » Thu, 2021-01-14 14:07
5
435 by jadolfbr
Fri, 2021-01-15 08:06
Normal topic Relaxing protein-RNA complexes
by rkirchdo » Fri, 2018-08-03 08:50
1
779 by rmoretti
Fri, 2018-08-24 11:28
Normal topic remodel ERROR: unrecognized mm_atom_type_name RGU
by daniloboskovic » Sat, 2020-02-22 11:55
1
480 by daniloboskovic
Tue, 2020-02-25 08:28
Normal topic remodel gives no output
by coomteng@gmail.com » Tue, 2018-03-06 07:40
3
1,594 by rmoretti
Wed, 2018-03-07 08:44
Normal topic Remodel with residue constraints
by sn » Fri, 2017-03-10 01:40
2
1,389 by rmoretti
Mon, 2017-03-13 08:01
Normal topic Remodel: neighbor cutoff
by felipet » Wed, 2014-07-16 08:11
2
1,734 by felipet
Thu, 2014-07-17 10:13
Normal topic Remodel: the pose does not have residue with chain=H, PDBnum=114
by lanselibai » Wed, 2019-12-25 13:35
1
668 by lanselibai
Fri, 2019-12-27 09:38
Normal topic remodel: what are the exact meanings of notations for secondary structure?
by lanselibai » Sat, 2015-01-17 04:53
0
986 by lanselibai
Sat, 2015-01-17 07:57
Normal topic RemodelMover and Input Pose
by ozyo » Tue, 2020-12-29 09:41
0
174 by ozyo
Tue, 2020-12-29 09:41
Normal topic Repeatability of DDG calculation
by jennifer » Wed, 2015-04-08 05:29
0
1,130 by jennifer
Wed, 2015-04-08 05:29
Normal topic reporting bugs? (erraser in rosetta 3.10)
by meyer » Fri, 2018-12-14 09:40
2
887 by everyday847
Fri, 2019-03-29 13:13
Normal topic Representing Cross-linked nitrogens
by jjlee2 » Sat, 2011-11-26 18:42
1
1,758 by smlewis
Mon, 2014-04-21 06:47
Normal topic Reproduce Robetta's ddg values of interface alanine scan using Rosetta?
by cossio » Mon, 2015-01-19 07:14
0
2,218 by cossio
Mon, 2015-01-19 07:14
Normal topic Reproducing the exact result using information from previos run
by nawsad » Thu, 2013-03-14 12:05
2
1,690 by nawsad
Mon, 2014-04-21 06:47
Normal topic Resfile as a input for InterfaceAnalyzer
by palak8669 » Sun, 2015-06-07 21:46
1
1,277 by smlewis
Mon, 2015-06-08 06:35
Normal topic Residue selector
by Alison_Yajie » Wed, 2020-06-17 19:57
0
289 by Alison_Yajie
Thu, 2020-06-18 09:47
Normal topic residues_patch_selectors CENTROID_HA
by Pernille » Fri, 2014-10-03 03:53
2
1,982 by Pernille
Wed, 2014-10-08 10:41
Normal topic Residue_energy_breakdown utility
by cn » Sat, 2012-03-17 06:11
3
2,476 by cn
Mon, 2014-04-21 06:47
Normal topic restrain residues in docking
by albumns » Sat, 2013-11-02 08:52
1
1,928 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Results of enzyme_design not consistent with Resfile
by yogeshkd » Thu, 2013-02-14 15:56
6
4,603 by yogeshkd
Mon, 2014-04-21 06:47
Normal topic revert_design_to_native app comparison to FavorNativeResidue mover
by nwhoppe » Wed, 2016-06-29 14:35
3
2,714 by rmoretti
Tue, 2016-07-12 09:30
Normal topic RMS determination using Rosetta 3.3
by adraney » Thu, 2011-12-08 12:44
2
2,331 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic RMSD calculation
by hamedkhakzad » Tue, 2016-09-13 04:56
2
2,447 by rmoretti
Wed, 2016-09-14 02:05
Normal topic Rna Denovo
by helderveras » Wed, 2020-05-06 08:40
5
1,068 by everyday847
Wed, 2020-05-20 08:52
Normal topic RNA modeling with step wise Monte Carlo error
by szcshr123 » Mon, 2020-12-07 18:08
3
405 by everyday847
Wed, 2020-12-09 21:46
Normal topic RNA structure prediction
by emaghdam » Sat, 2014-02-08 01:30
4
3,983 by rmoretti
Mon, 2014-02-24 09:12
Normal topic rna structure prediction
by cbala » Thu, 2011-04-14 07:42
5
4,003 by mkoohim
Mon, 2014-04-21 06:47
Normal topic RNP structure prediction flags
by daniloboskovic » Fri, 2019-08-16 11:10
0
447 by daniloboskovic
Fri, 2019-08-16 11:17
Normal topic Robetta ab initio - TrRosetta for membrane proteins
by benhardy » Wed, 2020-09-30 08:42
0
454 by benhardy
Wed, 2020-09-30 08:42
Normal topic rosetta 3.3 - antibody
by ron amon » Mon, 2014-07-21 00:44
1
1,657 by rmoretti
Mon, 2014-07-21 10:51
Normal topic Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains
by ahonegger » Tue, 2012-04-24 01:34
3
3,047 by ahonegger
Mon, 2014-04-21 06:47
Normal topic Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress)
by Danielsebas » Mon, 2019-09-23 03:24
5
1,239 by smlewis
Mon, 2019-09-23 11:42
Normal topic Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1
by cm21 » Wed, 2020-05-20 08:55
2
583 by cm21
Wed, 2020-05-20 11:22
Normal topic Rosetta antibody- modeling in the presense of an antigen
by agctomer » Mon, 2021-02-01 03:19
4
302 by nannemdp
Wed, 2021-02-03 08:52
Normal topic rosetta app
by MA » Wed, 2017-07-05 06:52
5
2,283 by smlewis
Tue, 2017-07-11 07:53
Normal topic rosetta backrub
by ladimafakher » Thu, 2018-10-04 08:01
4
1,573 by ladimafakher
Thu, 2018-11-01 03:47
Normal topic Rosetta DNA - Protein-DNA scoring function and binding energy
by tanoramb » Tue, 2012-05-08 14:00
1
3,714 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta dock irmsd
by Pernille » Sun, 2015-04-26 13:51
5
4,744 by rmoretti
Mon, 2015-10-12 15:10
Normal topic Rosetta failed in making score.fsc
by josdee » Sun, 2017-02-05 21:58
1
1,079 by smlewis
Mon, 2017-02-06 06:57
Normal topic Rosetta fragment tools installation error
by Danielsebas » Thu, 2019-08-29 02:17
2
733 by Danielsebas
Sun, 2019-09-01 02:38
Normal topic Rosetta Holes
by zsun12 » Wed, 2015-09-30 11:40
1
2,585 by rmoretti
Mon, 2015-10-12 15:20
Normal topic Rosetta make_fragments.pl error?
by Danielsebas » Mon, 2019-09-02 07:51
3
996 by Danielsebas
Thu, 2019-09-05 03:35
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