You are here
Rosetta 3 - General
Log in to post new content in the forum.
| Topic / Topic starter |
Replies |
Views | Last post | |
|---|---|---|---|---|
|
pmut and scoring by ldlamini » Tue, 2021-09-14 00:46 |
3 |
2,170 |
by matteoferla Mon, 2021-09-20 06:05 |
|
|
Where is Sicdock application now? Can I find a substitute？ by JasonIsaac » Sun, 2022-11-13 03:41 |
3 |
1,124 |
by rmoretti Mon, 2022-11-14 07:27 |
|
|
-loops:refine_repack_cycles option not accepted by loopmodel.linuxgccrelease by tsjain » Tue, 2013-02-05 18:47 |
3 |
3,949 |
by tsjain Mon, 2014-04-21 06:47 |
|
|
run Rosetta under windows prompt by skipper » Fri, 2013-12-20 21:16 |
3 |
4,417 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Clarify ProteinInterfaceDesign “randomness” by tsztain » Wed, 2019-02-27 09:41 |
3 |
2,449 |
by rmoretti Sat, 2019-03-30 12:12 |
|
|
Rotate chain by Germanico » Sun, 2021-05-09 16:36 |
3 |
2,123 |
by danpf Mon, 2021-05-10 10:04 |
|
|
create a centroid file from structure or NOE list by logandonaldson » Wed, 2013-03-20 12:23 |
3 |
5,148 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Fastrelax energy by Lindsay » Thu, 2014-01-16 21:04 |
3 |
5,074 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Rosetta Design Stalling by Jhreed » Sun, 2016-03-06 14:38 |
3 |
3,447 |
by rmoretti Mon, 2016-03-07 14:20 |
|
|
ERROR: f.check_fold_tree by sudhar » Mon, 2010-08-23 08:59 |
3 |
3,741 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Rosetta can't handle symmetric fold and dock for >10-subunit protein? by myang » Mon, 2011-09-26 11:52 |
3 |
3,706 |
by IAndre Mon, 2014-04-21 06:47 |
|
|
how to use backrub in rosetta3.1 by lqzhang » Mon, 2010-01-11 14:43 |
3 |
3,434 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Rosetta documentation by Ashafix » Sat, 2013-08-31 06:50 |
3 |
5,097 |
by Ashafix Mon, 2014-04-21 06:48 |
|
|
Rosetta remodel on intel Xeon Phi by pablogalazdavison » Wed, 2016-09-14 15:35 |
3 |
3,489 |
by pablogalazdavison Thu, 2016-09-15 16:36 |
|
|
Your compiler does not have full support for C++ll regex, and therefore can't suport RegEx_based_CDR_Detector/antitody grafting. by ldx022 » Thu, 2023-03-09 17:03 |
3 |
1,140 |
by ldx022 Sat, 2023-03-11 16:53 |
|
|
Quesition about Relax Mode by crysta11 » Wed, 2009-10-21 09:57 |
3 |
3,918 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Rosetta dock parallel by mahajanr » Tue, 2010-06-01 16:04 |
3 |
4,319 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
"CEN" atom in the pdb file by wszjzhang » Wed, 2010-03-17 14:35 |
3 |
4,836 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
|
|
Binding energy calculation by SunH » Thu, 2010-12-09 19:29 |
3 |
6,031 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
I got so many atoms in one residue by ylwang » Tue, 2020-03-24 04:40 |
3 |
2,136 |
by ylwang Tue, 2020-03-24 19:35 |
|
|
AnchoredPDBcreator by spraha » Wed, 2012-03-14 23:34 |
3 |
3,612 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Problem creating pNNMAKE.gnu by anirbanzz » Sat, 2010-04-17 02:14 |
3 |
4,167 |
by monica0569 Mon, 2014-04-21 06:47 |
|
|
Questions about rosetta fragment library ranking and fragment conformation sampling algorithm by mdyini » Thu, 2011-05-19 17:34 |
3 |
4,581 |
by dgront Mon, 2014-04-21 06:47 |
|
|
InterfaceAnalyzer total score = 0.000 by vmc99 » Wed, 2019-06-12 14:06 |
3 |
3,260 |
by jadolfbr Wed, 2019-06-12 20:17 |
|
|
membrane modeling error! by wtscrystal » Wed, 2009-12-09 21:28 |
3 |
5,298 |
by arthuc01 Mon, 2014-04-21 06:47 |
|
|
Error Scoring Application- Illegal attempt to score by samuelrpita » Thu, 2015-08-06 14:45 |
3 |
4,968 |
by rmoretti Wed, 2015-08-12 15:03 |
|
|
# decoys of silent by fred » Wed, 2014-04-02 06:00 |
3 |
3,550 |
by fred Fri, 2014-04-04 11:34 |
|
|
How to set start coordinates for ligand when doing protein_ligand docking by Huanhuan » Wed, 2021-08-18 21:09 |
3 |
1,892 |
by matteoferla Fri, 2021-08-20 08:37 |
|
|
NOE constraints with Rosetta 3.1 by mpiuzzi » Wed, 2010-02-24 02:40 |
3 |
3,601 |
by mpiuzzi Mon, 2014-04-21 06:47 |
|
|
Hbond tripped by alejandro » Mon, 2011-11-21 04:17 |
3 |
3,846 |
by alejandro Mon, 2014-04-21 06:47 |
|
|
RosettaDock-4.0 score term by Zjq1998 » Wed, 2022-06-29 22:07 |
3 |
1,596 |
by ssrb Tue, 2022-07-05 11:07 |
|
|
trying to create heme.params by einew » Mon, 2011-02-28 13:33 |
3 |
4,476 |
by einew Mon, 2014-04-21 06:47 |
|
|
Only 430 models are generated for membrane prediction by justin » Wed, 2010-01-06 00:04 |
3 |
3,668 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Question about run FLEXPEPDOCK with 3 chain by phanvy » Wed, 2014-07-02 08:46 |
3 |
3,589 |
by phanvy Wed, 2014-07-02 23:32 |
|
|
score_jd2.macosclangrelease No such file or directory by ahmadkhalifa » Mon, 2017-11-27 09:26 |
3 |
3,997 |
by everyday847 Tue, 2017-11-28 13:07 |
|
|
Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles? by nh_prt » Tue, 2013-03-26 12:22 |
3 |
3,644 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Abinitio isolated by ac.research » Wed, 2018-04-04 07:36 |
3 |
2,682 |
by smlewis Wed, 2018-04-04 10:42 |
|
|
interpreting score values in silent output file after running abinitiorelax by burkheadlab » Wed, 2011-03-09 15:42 |
3 |
3,595 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Figuring out the input flags required for this script by jjung380 » Wed, 2023-04-19 14:17 |
3 |
1,069 |
by rmoretti Mon, 2023-05-15 15:23 |
|
|
Refinement of a PDB structure containing multiple models by ahmadkhalifa » Wed, 2018-04-18 07:44 |
3 |
2,864 |
by smlewis Wed, 2018-04-18 19:03 |
|
|
I am a beginner in rosetta software and need help to build params file by nais » Fri, 2011-03-18 13:37 |
3 |
6,970 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
relax - P6G molecule by allan.ferrari » Wed, 2016-11-30 05:01 |
3 |
3,148 |
by allan.ferrari Tue, 2017-01-03 05:02 |
|
|
small molecule charge generated by molfile_to_params.py by rohi » Wed, 2021-03-17 09:35 |
3 |
1,986 |
by rmoretti Wed, 2021-03-17 13:52 |
|
|
location of define_interface.py by rohi » Mon, 2020-10-26 19:42 |
3 |
1,985 |
by rmoretti Tue, 2023-05-09 15:32 |
|
|
undefined symbol: ZN9CifString12UnknownValueE error meaning? by aniyaz » Wed, 2023-01-04 08:37 |
3 |
1,348 |
by aniyaz Wed, 2023-01-11 01:24 |
|
|
Does Rosetta have an app for detecting brakes and clashes in proteins by Anatol » Sat, 2012-09-08 15:48 |
3 |
4,486 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Error with options -dunbrack_prob_buried_semi and -dunbrack_prob_nonburied_semi by SamuelGong » Fri, 2023-01-27 06:20 |
3 |
1,010 |
by rmoretti Mon, 2023-01-30 08:04 |
|
|
Symmetric local protein docking by efratmas » Tue, 2011-01-11 03:00 |
3 |
4,427 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
prepare PDB with constrained relax by jarod » Sun, 2013-05-05 07:10 |
3 |
5,373 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
CDR Cluster Constrained Relax Equivalent by SenyorDrew » Wed, 2016-04-27 08:04 |
3 |
3,518 |
by SenyorDrew Tue, 2016-06-14 06:43 |
|
|
ERROR: unrecognized atomtype property VIRTUAL by harshkhare » Mon, 2011-11-14 09:40 |
3 |
3,794 |
by harshkhare Mon, 2014-04-21 06:47 |
|
|
Propagating the same mutation over "different" chains by mdeklotz » Thu, 2018-07-26 09:27 |
3 |
2,737 |
by rmoretti Fri, 2018-08-03 08:42 |
|
|
Cannot Open Resfile by csvajda » Fri, 2022-03-04 13:39 |
3 |
1,673 |
by csvajda Mon, 2022-03-07 07:46 |
|
|
Criteria on the calculation of Irmsd of the protein-protein interface by yzq » Tue, 2012-02-21 07:06 |
3 |
4,308 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
how to output a structure when scoring it? by tianbu » Tue, 2012-07-31 09:38 |
3 |
4,215 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Questions about Monte Carlo Simulated Annealing algorithm in the design protocols by mdyini » Thu, 2012-05-31 12:39 |
3 |
5,671 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
fix backbone design of interface residue by Lindsay » Tue, 2013-12-17 19:23 |
3 |
4,508 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
change DOF of NH3 group in N terminus by SergeyP » Wed, 2016-02-03 02:22 |
3 |
3,817 |
by SergeyP Thu, 2016-02-04 00:07 |
|
|
Docking 2 proteins including ligands by einew » Tue, 2011-03-08 13:33 |
3 |
3,685 |
by einew Mon, 2014-04-21 06:47 |
|
|
Abinitio starts at the 27th amino acid by JadAbbass » Thu, 2013-08-29 05:38 |
3 |
3,765 |
by JadAbbass Mon, 2014-04-21 06:48 |
|
|
Constraints and final scoring of satisfied constraints in ab initio by Azadeh » Tue, 2014-07-15 01:29 |
3 |
6,518 |
by rmoretti Thu, 2014-07-17 09:21 |
|
|
error for the pose reading:TRP:NtermProteinFull:triazolamerC missing: C1 by wyb » Fri, 2017-12-01 17:50 |
3 |
3,882 |
by rmoretti Sat, 2017-12-16 12:19 |
|
|
Problem with protein and ligand preparation before ligand docking. by zg148119@ohio.edu » Fri, 2021-02-05 06:47 |
3 |
3,068 |
by rmoretti Tue, 2021-02-09 09:22 |
|
|
Side-chain packing with multiple chains by pachecoj » Mon, 2014-04-21 16:53 |
3 |
4,579 |
by jadolfbr Mon, 2014-04-21 21:05 |
|
|
Weird results from flexpepdock MPI by gerdos » Fri, 2016-06-24 01:18 |
3 |
3,201 |
by smlewis Thu, 2016-06-30 08:44 |
|
|
why docking results are different? by albumns » Sat, 2010-12-18 23:53 |
3 |
3,531 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
how to make a combined PDB file? by fenghc » Mon, 2013-04-01 06:27 |
3 |
15,155 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Segmentation fault by Hongtham » Mon, 2014-12-15 20:21 |
3 |
5,129 |
by Sandy Fri, 2015-08-07 15:49 |
|
|
score terms by qlj » Wed, 2013-07-03 08:00 |
3 |
4,379 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Modeling protonated histidine by SenyorDrew » Mon, 2016-07-18 07:34 |
3 |
4,329 |
by matteoferla Sat, 2017-08-05 07:18 |
|
|
force field, energy function by masterofpuppets » Wed, 2015-01-21 11:06 |
3 |
6,161 |
by masterofpuppets Tue, 2015-01-27 07:07 |
|
|
Multiprocessor Execution by starone » Tue, 2016-04-19 20:06 |
3 |
4,453 |
by smlewis Thu, 2016-04-21 16:00 |
|
|
is it possbile to cluster pdb files? by albumns » Wed, 2010-10-06 02:38 |
3 |
5,385 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Getting an interface score from RosettaDock without docking by rosend » Fri, 2015-12-18 14:02 |
3 |
6,513 |
by rosend Fri, 2015-12-18 19:39 |
|
|
General protein-protein docking when no info. on structure is availble by jasnyderjr » Fri, 2016-12-09 04:55 |
3 |
3,270 |
by smlewis Tue, 2016-12-20 10:40 |
|
|
Bind a Ligand to RNA by hdavis9 » Wed, 2010-07-14 09:07 |
3 |
3,267 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Abinitio Video by ac.research » Tue, 2017-09-12 04:00 |
3 |
3,519 |
by ac.research Sun, 2017-09-24 11:25 |
|
|
pyrosetta.rosetta.core.pose.rna by chenjief » Tue, 2021-11-23 07:03 |
3 |
1,887 |
by matteoferla Mon, 2022-01-10 06:44 |
|
|
De novo density assembly weights don't add up to a 100 by ahmadkhalifa » Fri, 2018-08-03 12:07 |
3 |
2,627 |
by rmoretti Tue, 2019-10-22 07:05 |
|
|
Run protein-protein docking parallelly by mpi by Zehui Zhou » Thu, 2023-02-02 06:23 |
3 |
1,073 |
by Zehui Zhou Fri, 2023-02-03 05:51 |
|
|
NC atom type [Solved] by franfdez » Tue, 2012-02-07 16:05 |
3 |
4,022 |
by franfdez Mon, 2014-04-21 06:47 |
|
|
how to identify selected interface residues by vijayaraj81 » Mon, 2014-03-31 01:40 |
3 |
4,496 |
by rmoretti Tue, 2014-04-01 08:12 |
|
|
ligand docking with rosetta_scripts.linuxgccrelease by xpzhang » Thu, 2015-02-26 10:57 |
3 |
4,301 |
by rmoretti Mon, 2015-03-30 16:58 |
|
|
Cyclizing .pdb of a linear chain. by jcminerlanl » Wed, 2017-07-05 23:56 |
3 |
3,184 |
by jcminerlanl Thu, 2017-07-06 09:22 |
|
|
Rescoring protein docking decoys to get Irms by lj269 » Thu, 2014-10-23 13:23 |
3 |
4,195 |
by rmoretti Wed, 2014-10-29 14:30 |
|
|
loop modeling by MRH » Thu, 2013-08-22 23:19 |
3 |
4,291 |
by MRH Mon, 2014-04-21 06:48 |
|
|
Conversion from Dihedral angle representation to Cartesian representation by rodrigo.faccioli » Sat, 2012-02-25 11:57 |
3 |
16,552 |
by charlie.strauss Fri, 2016-09-02 10:08 |
|
|
Adding new files using rosetta classes went wrong by Jeremy1990 » Sun, 2015-04-26 01:07 |
3 |
3,897 |
by rmoretti Thu, 2015-04-30 16:09 |
|
|
how to use rosettadesign to do mutations on protein structure by lqzhang » Thu, 2010-03-04 07:43 |
3 |
4,200 |
by vanita Mon, 2014-04-21 06:47 |
|
|
Calling a Rosetta xml script in a Python script gives fail to validate error by ahmadkhalifa » Tue, 2018-03-06 08:00 |
3 |
4,339 |
by rmoretti Mon, 2018-03-19 12:35 |
|
|
XML schema file taken from Rosie docking giving errors in Rosetta Scripts by Delfosse57 » Mon, 2022-07-18 10:51 |
3 |
1,269 |
by rmoretti Mon, 2022-07-18 11:56 |
|
|
build local user guide by coomteng@gmail.com » Wed, 2018-03-28 13:55 |
3 |
2,819 |
by coomteng@gmail.com Wed, 2018-03-28 14:58 |
|
|
Determine the weights of score functions by SunH » Thu, 2010-09-02 07:20 |
3 |
4,517 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
what's the difference between recovery and sequence identity by Lindsay » Thu, 2012-04-26 05:46 |
3 |
4,997 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How to get the GDT_TS? by JadAbbass » Thu, 2013-09-05 11:59 |
3 |
5,670 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
does rosetta good at peptide-protein docking? by albumns » Mon, 2010-12-27 18:51 |
3 |
5,268 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Problem with running turtorial of rna denovo by myle » Fri, 2017-04-14 09:23 |
3 |
3,202 |
by rmoretti Tue, 2017-04-18 13:49 |
|
|
Converting charmm parameter files (.par) by ajasja » Mon, 2014-09-29 07:19 |
3 |
4,227 |
by jcminerlanl Tue, 2017-12-19 14:03 |
|
|
dna_denovo by frits » Fri, 2013-07-12 06:12 |
3 |
3,908 |
by frits Mon, 2014-04-21 06:48 |
|
|
error about 'std::bad_alloc' during running by zhisheng » Mon, 2011-01-10 09:45 |
4 |
11,405 |
by smlewis Mon, 2014-04-21 06:47 |
Log in to post new content in the forum.
