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Rosetta 3 - General
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RosettaHoles? by kbala » Thu, 2009-07-30 16:52 |
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3,859 |
by smlewis Mon, 2014-04-21 06:47 |
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Basic help with Protein-DNA and Protein-Protein modeling and engineering by Robert Evans » Sat, 2013-08-17 12:21 |
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3,863 |
by Robert Evans Mon, 2014-04-21 06:48 |
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Comparison between two fragment pickers by qlj » Mon, 2013-09-02 06:34 |
3 |
3,872 |
by rmoretti Mon, 2014-04-21 06:48 |
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RosettaCM rename or swap the order of sequences in your alignment file by ahmadkhalifa » Fri, 2017-12-22 08:42 |
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3,875 |
by rmoretti Mon, 2018-01-15 15:24 |
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Adding new files using rosetta classes went wrong by Jeremy1990 » Sun, 2015-04-26 01:07 |
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3,879 |
by rmoretti Thu, 2015-04-30 16:09 |
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Information about “membrane_highres_Menv_smooth.wts” by Groros » Sun, 2011-10-02 03:59 |
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3,882 |
by smlewis Mon, 2014-04-21 06:47 |
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AtomPair and SPLINE by attesor » Sat, 2015-06-20 11:42 |
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3,883 |
by attesor Thu, 2015-10-22 03:42 |
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dna_denovo by frits » Fri, 2013-07-12 06:12 |
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3,886 |
by frits Mon, 2014-04-21 06:48 |
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Quesition about Relax Mode by crysta11 » Wed, 2009-10-21 09:57 |
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3,893 |
by smlewis Mon, 2014-04-21 06:47 |
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Successful installation on OpenSuse11.1 - tests? by zharmad » Thu, 2010-08-19 00:30 |
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3,897 |
by zharmad Mon, 2014-04-21 06:47 |
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calculate low-resolution total docking score for a input pdb by jasnyderjr » Fri, 2015-12-11 23:08 |
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3,910 |
by rmoretti Wed, 2015-12-16 11:22 |
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-loops:refine_repack_cycles option not accepted by loopmodel.linuxgccrelease by tsjain » Tue, 2013-02-05 18:47 |
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3,914 |
by tsjain Mon, 2014-04-21 06:47 |
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could I add some constrain to the backbone but not completely fix it when relax? by albumns » Tue, 2010-06-29 05:43 |
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3,937 |
by smlewis Mon, 2014-04-21 06:47 |
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Fold tree error by mansi » Tue, 2010-05-18 07:43 |
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3,938 |
by mansi Mon, 2014-04-21 06:47 |
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segmentation fault when using design_hpatch scoring function by rbjacob » Mon, 2018-04-09 11:05 |
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3,947 |
by smlewis Wed, 2018-04-11 11:45 |
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how to keep modeling ignored ERROR? by eunwook » Sat, 2013-04-27 05:44 |
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3,947 |
by eunwook Mon, 2014-04-21 06:47 |
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How to input pdb to rosetta format add "missing" residues to pdb file by zhisheng » Tue, 2011-06-07 09:51 |
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3,948 |
by smlewis Mon, 2014-04-21 06:47 |
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loop modeling by isengupta13 » Wed, 2011-06-01 15:00 |
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3,952 |
by smlewis Mon, 2014-04-21 06:47 |
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How to run docking in rosetta with small molecule by ajaniharesh » Tue, 2012-02-28 03:58 |
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3,957 |
by smlewis Mon, 2014-04-21 06:47 |
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Cluster gdtmm vs. rmsd by brspurri » Thu, 2012-04-19 08:19 |
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3,961 |
by rmoretti Mon, 2014-04-21 06:47 |
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Error Atom_::dihedral_between_bonded_children by abiadak » Mon, 2012-07-30 06:34 |
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3,962 |
by abiadak Mon, 2014-04-21 06:47 |
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score_jd2.macosclangrelease No such file or directory by ahmadkhalifa » Mon, 2017-11-27 09:26 |
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3,966 |
by everyday847 Tue, 2017-11-28 13:07 |
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Energy minimization of a crystal structure with residues mutated in pymol by bharat_46010 » Wed, 2014-05-21 19:52 |
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3,968 |
by rmoretti Fri, 2014-05-23 08:09 |
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Rosetta atoms types for enzyme design by bharat_46010 » Thu, 2011-11-10 06:01 |
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3,976 |
by rmoretti Mon, 2014-04-21 06:47 |
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Cannot use SimpleMetrics by Vedasheersh » Sun, 2018-06-10 23:38 |
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3,978 |
by smlewis Tue, 2018-06-12 10:54 |
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force point mutation with fixbb by Anonymous » Wed, 2012-06-13 09:15 |
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3,978 |
by smlewis Mon, 2014-04-21 06:47 |
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NC atom type [Solved] by franfdez » Tue, 2012-02-07 16:05 |
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3,986 |
by franfdez Mon, 2014-04-21 06:47 |
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Rigid Body & Flexible Minimization by Hanieh » Thu, 2014-02-06 12:37 |
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3,989 |
by Hanieh Fri, 2014-02-28 12:43 |
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Errors in scorefiles after running Design by Jhreed » Tue, 2016-03-29 10:25 |
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4,000 |
by smlewis Wed, 2016-03-30 09:52 |
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RNA Parameter File by hdavis9 » Tue, 2010-07-06 11:36 |
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4,002 |
by smlewis Mon, 2014-04-21 06:47 |
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loop design by varma » Sun, 2012-11-04 21:25 |
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4,003 |
by varma Mon, 2014-04-21 06:47 |
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spline constraint by jadolfbr » Mon, 2012-06-25 04:43 |
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4,005 |
by smlewis Mon, 2014-04-21 06:47 |
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Why I have the different result with the same initial condition? by mikelin » Sat, 2011-06-04 11:35 |
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4,021 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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Structure Prediction: Max Sequence Length? by jcsaborio » Tue, 2009-07-14 12:10 |
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4,058 |
by jcsaborio Mon, 2014-04-21 06:47 |
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span and frags filefor multichain transmembrane protein by zhiguang » Wed, 2016-10-26 13:28 |
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4,060 |
by zhiguang Tue, 2016-11-15 12:27 |
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Problem in 3D structure building of ss DNA aptamer by irshadbaig » Sun, 2013-11-17 20:15 |
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4,064 |
by rmoretti Mon, 2014-04-21 06:48 |
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Adding noncanonical amino acid (PCA) to Rosetta 3 by JuliusSu » Fri, 2014-08-01 11:23 |
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4,069 |
by JuliusSu Fri, 2014-08-08 02:07 |
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RMS in Score Application by brspurri » Thu, 2011-12-29 09:19 |
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4,080 |
by smlewis Mon, 2014-04-21 06:47 |
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Problems with output control by Sunyp_IM » Thu, 2017-06-22 15:30 |
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4,090 |
by rmoretti Wed, 2017-06-28 01:33 |
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How to allow rosetta to recognize the ASP and protonated ASP? by Jeffrey_Chen » Mon, 2014-03-24 20:34 |
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4,097 |
by Jeffrey_Chen Tue, 2014-03-25 23:06 |
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demos/public/ideal_proteins Segmentation fault by coomteng@gmail.com » Wed, 2018-03-07 00:15 |
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4,116 |
by rmoretti Thu, 2018-03-08 07:46 |
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Patches for post-translational modifications by ltrabuco » Tue, 2011-02-22 01:00 |
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4,131 |
by ltrabuco Mon, 2014-04-21 06:47 |
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manually changing fixbb residue ref energies by jtmacd » Wed, 2009-11-25 08:43 |
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4,138 |
by jtmacd Mon, 2014-04-21 06:47 |
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Error when using RabD with a nanobody. by zhangying1990 » Mon, 2018-12-17 04:40 |
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4,142 |
by jadolfbr Mon, 2019-01-28 08:46 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Thu, 2016-06-30 11:06 |
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4,148 |
by rmoretti Tue, 2016-07-12 08:18 |
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Problem creating pNNMAKE.gnu by anirbanzz » Sat, 2010-04-17 02:14 |
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4,152 |
by monica0569 Mon, 2014-04-21 06:47 |
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selecting pivot_residue in Backrub for ensemble generation by rohi » Fri, 2020-08-07 15:41 |
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4,155 |
by matteoferla Tue, 2020-08-11 10:00 |
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Multiprocessing and running jobs on server using slurm by ahmadkhalifa » Mon, 2018-04-09 10:59 |
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4,166 |
by rmoretti Tue, 2018-04-10 16:00 |
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Rescoring protein docking decoys to get Irms by lj269 » Thu, 2014-10-23 13:23 |
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4,175 |
by rmoretti Wed, 2014-10-29 14:30 |
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Protein folding using Monte Carlo derived techniques and implicit solvation by hefeweizen » Tue, 2013-12-10 06:30 |
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4,176 |
by rmoretti Mon, 2014-04-21 06:48 |
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how to use rosettadesign to do mutations on protein structure by lqzhang » Thu, 2010-03-04 07:43 |
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4,182 |
by vanita Mon, 2014-04-21 06:47 |
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how to output a structure when scoring it? by tianbu » Tue, 2012-07-31 09:38 |
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4,203 |
by rmoretti Mon, 2014-04-21 06:47 |
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Converting charmm parameter files (.par) by ajasja » Mon, 2014-09-29 07:19 |
3 |
4,203 |
by jcminerlanl Tue, 2017-12-19 14:03 |
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Antibody Homology Modeling - Antibody vs. Antibody_legacy by cannond » Tue, 2017-02-14 05:53 |
4 |
4,208 |
by cannond Wed, 2017-03-01 08:05 |
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Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released! by xujc » Wed, 2012-10-24 11:15 |
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4,223 |
by xujc Mon, 2014-04-21 06:47 |
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membrane protein packing prediction by djpittdj » Fri, 2012-01-13 08:55 |
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4,228 |
by pardave Mon, 2014-04-21 06:47 |
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postive score models from AbinitioRelax by xpzhang » Fri, 2012-06-22 12:34 |
4 |
4,246 |
by smlewis Mon, 2014-04-21 06:47 |
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loop modeling by MRH » Thu, 2013-08-22 23:19 |
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4,259 |
by MRH Mon, 2014-04-21 06:48 |
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[Mover] is not known to the MoverFactory by Jhreed » Fri, 2016-08-05 12:23 |
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4,261 |
by msardejani Sun, 2016-08-07 17:49 |
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pepspec aplication - segmentation fault by tiagogomes89 » Fri, 2011-09-02 11:18 |
4 |
4,264 |
by smlewis Mon, 2014-04-21 06:47 |
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AbinitioRelax with restraints/constraints by jtmacd » Mon, 2011-07-11 07:07 |
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4,274 |
by jtmacd Mon, 2014-04-21 06:47 |
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Loop extensions at the end of chains by japgar » Mon, 2010-07-26 12:35 |
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4,276 |
by japgar Mon, 2014-04-21 06:47 |
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Criteria on the calculation of Irmsd of the protein-protein interface by yzq » Tue, 2012-02-21 07:06 |
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4,284 |
by smlewis Mon, 2014-04-21 06:47 |
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ligand docking with rosetta_scripts.linuxgccrelease by xpzhang » Thu, 2015-02-26 10:57 |
3 |
4,284 |
by rmoretti Mon, 2015-03-30 16:58 |
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Good baseline settings for side chain packing by pachecoj » Tue, 2015-01-13 19:25 |
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4,285 |
by rmoretti Wed, 2015-01-21 10:05 |
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I used mpirun/mpiexec and it runs same job 32times by leygkn » Mon, 2020-09-21 00:53 |
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4,293 |
by jadolfbr Thu, 2020-09-24 10:04 |
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Radius of Gyration by ctaylor » Mon, 2009-09-21 12:45 |
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4,296 |
by ctaylor Mon, 2014-04-21 06:47 |
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how to keep native structure when do loop modeling by zlni » Sun, 2009-05-03 10:12 |
4 |
4,296 |
by zlni Mon, 2014-04-21 06:47 |
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Does Rosetta have homology modeling protocol? by SunH » Thu, 2010-11-04 07:36 |
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4,297 |
by smlewis Mon, 2014-04-21 06:47 |
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Calling a Rosetta xml script in a Python script gives fail to validate error by ahmadkhalifa » Tue, 2018-03-06 08:00 |
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4,303 |
by rmoretti Mon, 2018-03-19 12:35 |
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Rosetta dock parallel by mahajanr » Tue, 2010-06-01 16:04 |
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4,305 |
by smlewis Mon, 2014-04-21 06:47 |
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Modeling protonated histidine by SenyorDrew » Mon, 2016-07-18 07:34 |
3 |
4,305 |
by matteoferla Sat, 2017-08-05 07:18 |
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PDB HETATM by hwillis » Thu, 2009-08-06 12:03 |
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4,307 |
by smlewis Mon, 2014-04-21 06:47 |
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running Rosetta locally using commands generated by the Robetta web server by cneale » Sat, 2014-03-15 11:48 |
3 |
4,307 |
by cneale Fri, 2014-03-21 18:13 |
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Biopython error in mac os x by vinodh » Tue, 2012-06-12 12:23 |
3 |
4,313 |
by jadolfbr Mon, 2014-04-21 06:47 |
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enzdes error by bo » Tue, 2012-08-21 09:12 |
4 |
4,317 |
by bo Mon, 2014-04-21 06:47 |
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How to integrate Rosetta code to my program? by Lsg » Tue, 2011-06-28 07:18 |
3 |
4,323 |
by smlewis Mon, 2014-04-21 06:47 |
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Memory leak when PDB preparation by Jacky010 » Mon, 2019-05-06 01:28 |
6 |
4,348 |
by Jacky010 Tue, 2019-05-14 01:24 |
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computer shuts down during autobulding with rosetta by intekhab » Tue, 2011-07-19 01:07 |
4 |
4,353 |
by rmoretti Mon, 2014-04-21 06:47 |
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score terms by qlj » Wed, 2013-07-03 08:00 |
3 |
4,354 |
by rmoretti Mon, 2014-04-21 06:48 |
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Unrecognized aa NO3 by JadAbbass » Sun, 2013-07-14 10:48 |
3 |
4,364 |
by JadAbbass Mon, 2014-04-21 06:48 |
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core.scoring.rms_util: WARNING: CA_rmsd out of range... by mdyini » Sat, 2012-02-25 16:14 |
4 |
4,379 |
by mdyini Mon, 2014-04-21 06:47 |
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Error when running "plot_LHOC.py" by Sunyp_IM » Sun, 2017-08-13 05:54 |
5 |
4,379 |
by smlewis Wed, 2017-08-16 08:30 |
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Unrecognised resiudues when rescoring PDB files generated by enzyme_design under MPI by linucks » Tue, 2018-02-13 03:41 |
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4,382 |
by linucks Fri, 2018-02-23 08:08 |
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using defined WATERS in PACKING by ast » Wed, 2012-01-11 09:11 |
4 |
4,387 |
by smlewis Mon, 2014-04-21 06:47 |
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combine_silent ERROR: unknown atom_name: CYS SG by freedman » Mon, 2017-03-06 10:56 |
5 |
4,389 |
by freedman Mon, 2017-03-06 13:24 |
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run Rosetta under windows prompt by skipper » Fri, 2013-12-20 21:16 |
3 |
4,391 |
by rmoretti Mon, 2014-04-21 06:48 |
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Multi-chain Modelling by Sandy » Sun, 2015-08-09 14:41 |
2 |
4,397 |
by rmoretti Tue, 2015-09-08 10:18 |
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Symmetric local protein docking by efratmas » Tue, 2011-01-11 03:00 |
3 |
4,400 |
by smlewis Mon, 2014-04-21 06:47 |
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Noncanonical amino acid HIP by Victor » Fri, 2014-01-31 07:45 |
2 |
4,405 |
by Victor Fri, 2014-01-31 10:41 |
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Multiprocessor Execution by starone » Tue, 2016-04-19 20:06 |
3 |
4,414 |
by smlewis Thu, 2016-04-21 16:00 |
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dG/dsasa , What is the exact meaning? by Apiwat » Sun, 2014-04-13 00:38 |
2 |
4,418 |
by Apiwat Thu, 2014-04-17 09:56 |
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Error reading new residue .param file by mgrom92 » Tue, 2016-03-22 12:54 |
2 |
4,420 |
by mgrom92 Wed, 2016-03-23 16:45 |
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Difference between score and silent_score when silent files are combined by justin » Tue, 2012-01-03 06:44 |
4 |
4,444 |
by justin Mon, 2014-04-21 06:47 |
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trying to create heme.params by einew » Mon, 2011-02-28 13:33 |
3 |
4,453 |
by einew Mon, 2014-04-21 06:47 |
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why energy is positive? by albumns » Tue, 2014-12-23 00:05 |
3 |
4,465 |
by rmoretti Mon, 2015-02-09 11:21 |
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Problems with disulphide bonds during KIC by Loki01 » Tue, 2017-11-28 03:11 |
5 |
4,465 |
by Loki01 Thu, 2017-12-14 06:20 |
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The question about protonation of Rosetta by asbelx » Tue, 2017-12-19 05:44 |
3 |
4,470 |
by rmoretti Mon, 2018-01-15 15:34 |
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Does Rosetta have an app for detecting brakes and clashes in proteins by Anatol » Sat, 2012-09-08 15:48 |
3 |
4,472 |
by smlewis Mon, 2014-04-21 06:47 |
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how to identify selected interface residues by vijayaraj81 » Mon, 2014-03-31 01:40 |
3 |
4,475 |
by rmoretti Tue, 2014-04-01 08:12 |
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