You are here
Rosetta 3 - General
Log in to post new content in the forum.
| Topic / Topic starter | Replies |
Views |
Last post | |
|---|---|---|---|---|
|
Rosetta membrane prediction! by wtscrystal » Tue, 2009-11-17 05:55 |
0 |
2,388 |
by wtscrystal Mon, 2014-04-21 06:47 |
|
|
Rosetta 3.1 seg faults gcc while compiling on Fedora 11 by jtmacd » Fri, 2009-10-02 05:26 |
1 |
2,391 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Question about wrong homology design by mony2182 » Fri, 2014-07-04 10:26 |
1 |
2,393 |
by rmoretti Mon, 2014-07-07 08:08 |
|
|
Ligand Docking with Orphan GPCR by marsaa » Thu, 2016-10-13 07:45 |
1 |
2,393 |
by rmoretti Fri, 2016-10-14 16:43 |
|
|
where do new .params files go? by einew » Wed, 2011-01-05 12:09 |
1 |
2,398 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Data Check for a newb by ac.research » Sun, 2017-03-12 23:42 |
2 |
2,401 |
by ac.research Fri, 2017-03-31 07:36 |
|
|
What is the best way to make a residue-specific SASA constraint? by jmaly » Thu, 2020-01-23 16:40 |
2 |
2,401 |
by matteoferla Wed, 2020-01-29 12:18 |
|
|
Knowledge check on steric effects by pachecoj » Thu, 2014-10-16 09:13 |
1 |
2,402 |
by rmoretti Thu, 2014-10-16 10:33 |
|
|
I got the message "bad format in first line of silent file". How do I resolve this? by monos_morpheus » Thu, 2011-02-03 21:09 |
1 |
2,403 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
constraints by lah435 » Sun, 2017-03-12 03:25 |
2 |
2,413 |
by lah435 Mon, 2017-04-03 19:50 |
|
|
Calibur not listing cluster members by Swillard » Sun, 2018-07-01 13:07 |
2 |
2,415 |
by benhardy Fri, 2021-05-07 07:22 |
|
|
nbr_atom in ligand docking by phanvy » Fri, 2015-07-03 07:40 |
1 |
2,419 |
by rmoretti Fri, 2015-07-03 13:04 |
|
|
Why I_sc of Rosetta 2016.02 and 2018.21 are so different? by eminegenetics » Mon, 2018-07-16 12:51 |
2 |
2,419 |
by eminegenetics Wed, 2018-07-18 13:48 |
|
|
Binary silent Output file reading problem by wlzhang » Sun, 2014-04-20 17:47 |
1 |
2,420 |
by wlzhang Sun, 2014-04-20 18:17 |
|
|
Generate full symmetric assembly from subsystem by lj269 » Thu, 2011-04-28 20:04 |
1 |
2,424 |
by IAndre Mon, 2014-04-21 06:47 |
|
|
Read svn acces or acces to developmen version of rosetta by knutjbj » Thu, 2010-12-09 17:06 |
1 |
2,426 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
All possible mutations by abdullah_ahmed » Tue, 2011-01-04 02:11 |
1 |
2,428 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Clarify ProteinInterfaceDesign “randomness” by tsztain » Wed, 2019-02-27 09:41 |
3 |
2,431 |
by rmoretti Sat, 2019-03-30 12:12 |
|
|
Is it possible to use two broker files by kalabharath » Wed, 2011-06-08 01:01 |
1 |
2,432 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
About RosettaScript examples by jiongzhang » Thu, 2012-03-08 10:50 |
1 |
2,432 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
start pose and native pose don't match in lengh by zhisheng » Thu, 2011-12-15 10:23 |
1 |
2,435 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Possible documentation error by imurch » Tue, 2012-04-17 00:11 |
1 |
2,435 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
Where to find old version of Rosetta with git version number by mao_x » Wed, 2019-08-07 01:22 |
2 |
2,439 |
by mao_x Thu, 2019-08-08 01:37 |
|
|
Entropy calculation by abdullah_ahmed » Wed, 2010-12-01 07:52 |
1 |
2,441 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How to score the crystal structure? by vsjasion » Fri, 2011-11-18 15:49 |
1 |
2,442 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
score function for centroid mode by MarkW » Thu, 2015-02-26 08:56 |
1 |
2,444 |
by jadolfbr Fri, 2015-02-27 11:08 |
|
|
Error message: ArchiveManager spinning down by Lati » Sun, 2016-01-24 02:42 |
1 |
2,446 |
by smlewis Sun, 2016-01-24 03:24 |
|
|
RosettaHoles in 3.1 by enoee » Thu, 2010-10-14 07:12 |
1 |
2,446 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
scorefunction Talaris2013 by dave » Tue, 2015-03-03 02:13 |
1 |
2,447 |
by rmoretti Thu, 2015-04-02 12:52 |
|
|
MoveMap file for backrub by jiyongpark.77 » Sat, 2009-07-18 03:53 |
1 |
2,449 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Reading chloride anions by Martin Floor » Mon, 2018-08-27 14:29 |
2 |
2,450 |
by Martin Floor Tue, 2018-08-28 13:21 |
|
|
About Rosetta Scoring Function by wszjzhang » Wed, 2010-02-03 09:22 |
1 |
2,452 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
What is the different between dun08 and default dunbrack library? by SunH » Mon, 2010-11-08 06:14 |
1 |
2,470 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How to create a rotamer set that includes all possible rotamers of all possible amino acids by AyushGoyal » Thu, 2014-11-06 10:37 |
1 |
2,472 |
by smlewis Fri, 2014-11-07 12:03 |
|
|
Free FSC score for validating refinement by ahmadkhalifa » Thu, 2018-05-10 05:53 |
2 |
2,474 |
by ahmadkhalifa Fri, 2018-06-29 07:54 |
|
|
Hydrogen bond detection and shape complementarity by sujigeorge1979 » Fri, 2019-06-14 02:39 |
3 |
2,476 |
by sujigeorge1979 Thu, 2019-06-27 01:30 |
|
|
How to site the scoring application in rosetta3.1? by doranhen » Thu, 2012-07-05 10:07 |
1 |
2,479 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How to specify constraints during fold-and-dock? by sarah_b » Tue, 2020-05-12 01:55 |
3 |
2,480 |
by matteoferla Thu, 2020-05-14 07:01 |
|
|
Error using ddg_monomer application (Assertion `pose.residue(resnum).name1() == wt` failed) by sgaray » Thu, 2021-06-24 14:47 |
2 |
2,482 |
by sgaray Fri, 2021-06-25 11:26 |
|
|
general question about protein docking by albumns » Mon, 2010-12-13 23:26 |
1 |
2,483 |
by JeffreyGray Mon, 2014-04-21 06:47 |
|
|
pdb 2 silent with ss information by kalabharath » Sun, 2013-04-14 20:59 |
1 |
2,490 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
could restta consider the flexibility of backbone duirng protein docking? by albumns » Wed, 2010-11-24 01:00 |
1 |
2,490 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Design with non-canonical amino acids (NCAA) by yinasun » Mon, 2019-08-05 00:34 |
2 |
2,494 |
by matteoferla Thu, 2019-08-22 05:39 |
|
|
Fusing C-terminal or N-terminal segments onto proteins using Remodel by achambe » Tue, 2016-01-05 09:39 |
1 |
2,496 |
by achambe Wed, 2016-01-13 10:46 |
|
|
How to generate a symmetry definition file for octahedral symmetry? by Anonymous » Wed, 2012-08-15 05:20 |
0 |
2,499 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
ddG average energy by dave » Wed, 2013-04-03 03:36 |
1 |
2,507 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
problems with cluster program by umeshghosh » Thu, 2010-04-08 07:45 |
1 |
2,507 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Parametrisation problems by DmitriiN » Tue, 2016-05-31 09:37 |
2 |
2,508 |
by DmitriiN Wed, 2016-06-01 15:46 |
|
|
How to minimize only a few key residues' orientation by Ronghai Cheng » Mon, 2018-11-05 18:37 |
2 |
2,510 |
by Ronghai Cheng Tue, 2018-11-13 21:56 |
|
|
Rosetta Antibody: Unable to open file and terminates by denatured » Thu, 2019-12-12 11:26 |
1 |
2,516 |
by denatured Fri, 2019-12-13 11:19 |
|
|
packing option "explicit_h2o" and "solvate" by SunH » Wed, 2010-11-17 00:03 |
1 |
2,519 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Explanation of constraint functions? by aloshbau » Mon, 2015-12-14 22:38 |
2 |
2,523 |
by aloshbau Mon, 2015-12-14 23:30 |
|
|
Generating Protein/NA decoys by rbeier1 » Mon, 2016-01-11 03:25 |
1 |
2,529 |
by rmoretti Thu, 2016-04-28 16:25 |
|
|
Is the Fold&Dock protocol availabe in Rosetta3.1 by justin » Mon, 2011-01-17 02:41 |
2 |
2,539 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Snugdock and antibody modelling by sudhar » Thu, 2010-06-10 08:13 |
1 |
2,541 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
ERROR: filtered_alignments.size() > 0 by jhbrown » Tue, 2012-01-17 13:28 |
2 |
2,541 |
by jhbrown Mon, 2014-04-21 06:47 |
|
|
"unrecognized aa ACT" by einew » Sat, 2011-08-27 14:58 |
1 |
2,546 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
angle constraints by gw » Tue, 2011-07-19 07:49 |
1 |
2,546 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
mode=release compile on a mac-pro , seg faults and bus errors by dnasmith » Thu, 2010-09-09 16:56 |
2 |
2,552 |
by dnasmith Mon, 2014-04-21 06:47 |
|
|
Changing Monte Carlo temperature for relax by jruhym » Thu, 2012-02-02 15:18 |
1 |
2,554 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
reporting IteratedConvergence status by sdh_h » Thu, 2016-08-04 10:05 |
2 |
2,555 |
by sdh_h Thu, 2016-08-04 11:22 |
|
|
Will Rosetta Flexpepdock be adequate for this for now.? by monos_morpheus » Wed, 2011-04-27 19:10 |
1 |
2,555 |
by londonir Mon, 2014-04-21 06:47 |
|
|
Error with simple_cycpep_predict protocol while using a native pdb file by Florent Langenfeld » Tue, 2019-03-26 10:05 |
3 |
2,556 |
by Florent Langenfeld Tue, 2020-09-22 03:03 |
|
|
Minimizing across jumps by SenyorDrew » Thu, 2017-07-06 06:26 |
2 |
2,561 |
by SenyorDrew Thu, 2017-07-06 07:48 |
|
|
Intel Compiler and OS X Intel by bene » Tue, 2009-10-20 10:20 |
1 |
2,566 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Performace Benchmarking by Tushar Kush » Wed, 2019-12-04 02:50 |
2 |
2,568 |
by smlewis Wed, 2019-12-04 13:07 |
|
|
Meaning of a couple terms? by aloshbau » Sun, 2016-02-07 16:48 |
2 |
2,572 |
by aloshbau Sun, 2016-02-14 20:14 |
|
|
the problem in making fragments by croshong » Thu, 2009-12-03 17:15 |
1 |
2,577 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
error in cluster running by albumns » Mon, 2011-09-05 00:24 |
1 |
2,579 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
runtime error by exchhattu » Wed, 2010-03-03 02:54 |
2 |
2,580 |
by exchhattu Mon, 2014-04-21 06:47 |
|
|
Membrane AbInitio by coxford » Sat, 2012-12-22 05:06 |
0 |
2,581 |
by coxford Mon, 2014-04-21 06:47 |
|
|
Rosetta (antibody_designer) performance by Kihang _Youn » Wed, 2022-03-02 00:48 |
7 |
2,583 |
by Kihang _Youn Thu, 2022-03-10 16:30 |
|
|
prepack vs. relax with bb_cst by Anonymous » Mon, 2012-06-25 06:50 |
1 |
2,588 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
RestrictToRepackingRLT and PreventRepackingRLT by coomteng@gmail.com » Mon, 2018-03-05 11:19 |
2 |
2,593 |
by coomteng@gmail.com Tue, 2018-03-06 02:31 |
|
|
Evaluate Docking Result by byin » Thu, 2014-07-03 11:31 |
1 |
2,597 |
by rmoretti Wed, 2014-07-16 08:07 |
|
|
harmonic_Calphas in RosettaLigand flags.txt by cpkuntz » Wed, 2010-07-14 08:57 |
2 |
2,600 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Dumb question: Rosetta 3 vs Rosetta++, what's the difference? by mintseris » Tue, 2013-12-31 13:03 |
1 |
2,603 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
DockingProtocol mover ensemble error by dfcoelho » Tue, 2018-10-16 08:32 |
2 |
2,604 |
by brspurri Thu, 2020-08-20 13:22 |
|
|
Is it better to have smaller nstruct but many runs? by Loki01 » Mon, 2018-11-19 11:50 |
3 |
2,610 |
by smlewis Mon, 2018-11-19 13:20 |
|
|
De novo density assembly weights don't add up to a 100 by ahmadkhalifa » Fri, 2018-08-03 12:07 |
3 |
2,612 |
by rmoretti Tue, 2019-10-22 07:05 |
|
|
Getting started with Rosetta by myang » Tue, 2009-04-07 16:25 |
1 |
2,614 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
generating 10 lowest energy structures from abinitio by isengupta13 » Fri, 2010-05-07 11:44 |
2 |
2,616 |
by ndousis Mon, 2014-04-21 06:47 |
|
|
Can rosetta model cyclic peptide? by Apiwat » Fri, 2014-02-07 02:08 |
1 |
2,625 |
by rmoretti Tue, 2014-02-11 06:24 |
|
|
How to transform a pose from symmetric into non-symmetric? by msardejani » Tue, 2016-10-04 16:55 |
2 |
2,626 |
by msardejani Wed, 2016-10-05 10:53 |
|
|
Predict the N-terminal of a protein by aliaselin » Mon, 2010-11-08 03:23 |
2 |
2,628 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
backbone-independent density by SergeyP » Sun, 2016-03-20 04:57 |
2 |
2,628 |
by SergeyP Thu, 2016-05-05 02:07 |
|
|
params file for beta-amino acids by phonez » Mon, 2021-03-29 18:30 |
4 |
2,631 |
by everyday847 Thu, 2021-04-01 11:59 |
|
|
AtomTree::torsion_angle() can't find dof! in match and enzdes by petrikigor » Fri, 2012-10-19 09:49 |
1 |
2,633 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
how to docking including HETATM by tricia » Tue, 2009-05-05 22:03 |
1 |
2,652 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
no template pdb provided for alignment by HZHANG020 » Sat, 2014-06-14 06:27 |
1 |
2,652 |
by rmoretti Mon, 2014-06-16 08:23 |
|
|
Adding centroid .params files for non-canonical residues based on all-atom .params files by jcminerlanl » Thu, 2017-04-27 09:28 |
2 |
2,653 |
by vmulligan Thu, 2017-04-27 16:41 |
|
|
adding NCAA to the N-terminal of RCSB pdb by ate » Tue, 2021-06-08 08:24 |
4 |
2,653 |
by Subhrodeep Saha Sat, 2021-06-19 07:17 |
|
|
Protein-Protein Docking by hwillis » Fri, 2009-08-07 01:31 |
1 |
2,653 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Jump::random_trans strange behavior by SergeyP » Tue, 2015-11-03 07:56 |
2 |
2,659 |
by SergeyP Sat, 2015-12-19 05:20 |
|
|
-RBSegmentRelax:cst_wt not present in ca_to_allatom.linuxgccrelease application? by Karol » Thu, 2016-05-12 06:30 |
2 |
2,665 |
by Karol Thu, 2016-05-12 07:58 |
|
|
Abinitio isolated by ac.research » Wed, 2018-04-04 07:36 |
3 |
2,669 |
by smlewis Wed, 2018-04-04 10:42 |
|
|
Constraining a docking study by jos » Tue, 2011-10-18 05:26 |
2 |
2,671 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
abintio clustering - funnel plot by vamsi » Fri, 2011-03-25 09:18 |
1 |
2,673 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
input secondary structure prediction to AbinitioRelax by biofisikx » Mon, 2010-08-09 12:36 |
2 |
2,677 |
by biofisikx Mon, 2014-04-21 06:47 |
|
|
protein-protien docking with uniform trans by lkingsle » Thu, 2012-02-09 07:19 |
1 |
2,683 |
by mpacella Mon, 2014-04-21 06:47 |
Log in to post new content in the forum.
