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Rosetta 3 - General

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Normal topic span and frags filefor multichain transmembrane protein
by zhiguang » Wed, 2016-10-26 13:28
4
1,595 by zhiguang
Tue, 2016-11-15 12:27
Normal topic Error when using next-gen KIC (Signal 6)
by janwp » Tue, 2014-08-26 08:36
1
1,603 by amelie
Tue, 2014-09-30 14:29
Normal topic Pair potential
by jadolfbr » Thu, 2011-12-08 08:06
1
1,604 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to use backrub in rosetta3.1
by lqzhang » Mon, 2010-01-11 14:43
3
1,604 by smlewis
Mon, 2014-04-21 06:47
Normal topic Antibody Homology Modeling - Antibody vs. Antibody_legacy
by cannond » Tue, 2017-02-14 05:53
4
1,607 by cannond
Wed, 2017-03-01 08:05
Normal topic relax from a silent input file
by mintseris » Thu, 2010-04-29 19:54
2
1,613 by mintseris
Mon, 2014-04-21 06:47
Normal topic Question about run FLEXPEPDOCK with 3 chain
by phanvy » Wed, 2014-07-02 08:46
3
1,615 by phanvy
Wed, 2014-07-02 23:32
Normal topic Rosetta membrane prediction!
by wtscrystal » Tue, 2009-11-17 05:55
0
1,616 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic Computing energy gradients for side chain minimization
by pachecoj » Wed, 2017-03-29 08:03
5
1,616 by pachecoj
Wed, 2017-03-29 12:32
Normal topic redesign a enzyme by fixing the active site
by Lindsay » Wed, 2012-03-07 08:23
2
1,617 by Lindsay
Mon, 2014-04-21 06:47
Normal topic relax NOT CONVERGED
by albumns » Thu, 2010-06-24 21:25
3
1,625 by smlewis
Mon, 2014-04-21 06:47
Normal topic model protein at low pH
by ytao » Mon, 2012-11-05 07:52
1
1,629 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to modify disulfide bonds constrain in homology modeling
by eunwook » Mon, 2013-05-13 04:56
1
1,636 by smlewis
Mon, 2014-04-21 06:47
Normal topic get_distances command in rosetta 3.5
by pramod » Mon, 2014-01-20 11:31
3
1,636 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Errors in scorefiles after running Design
by Jhreed » Tue, 2016-03-29 10:25
4
1,638 by smlewis
Wed, 2016-03-30 09:52
Normal topic Typical relax options not applied in relax.mpi.linuxiccrelease??
by David Weis » Mon, 2017-02-27 11:35
5
1,639 by rmoretti
Thu, 2017-08-03 09:01
Normal topic AtomPair and SPLINE
by attesor » Sat, 2015-06-20 11:42
2
1,641 by attesor
Thu, 2015-10-22 03:42
Normal topic RosettaProtein_Docking
by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28
1
1,642 by rmoretti
Fri, 2015-07-03 13:24
Normal topic Only 430 models are generated for membrane prediction
by justin » Wed, 2010-01-06 00:04
3
1,642 by smlewis
Mon, 2014-04-21 06:47
Normal topic DomainAssembly Mover with constraints (using RosettaScripts)
by resiros » Wed, 2016-09-21 11:19
3
1,652 by rmoretti
Mon, 2016-11-14 14:21
Normal topic change DOF of NH3 group in N terminus
by SergeyP » Wed, 2016-02-03 02:22
3
1,655 by SergeyP
Thu, 2016-02-04 00:07
Normal topic Quesition about Relax Mode
by crysta11 » Wed, 2009-10-21 09:57
3
1,656 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to get the RMSD between two .pdb structures?
by cossio » Wed, 2014-12-03 05:33
1
1,658 by rmoretti
Wed, 2014-12-03 18:52
Normal topic Residue variant types and fragments
by jadolfbr » Mon, 2013-01-21 09:01
2
1,659 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Rosetta membrane blastpgp/psiblast database problem for lips4 generation
by fbarrera » Tue, 2014-09-16 11:45
1
1,661 by rmoretti
Wed, 2014-09-17 10:06
Normal topic RosettaMatch in Rosetta3.2?
by SenyorDrew » Fri, 2010-08-13 07:47
1
1,661 by smlewis
Mon, 2014-04-21 06:47
Normal topic backrub score different from calculated score
by attesor » Wed, 2014-04-09 07:34
3
1,667 by rmoretti
Thu, 2014-04-10 07:38
Normal topic Does the energy score output by fixbb design have unit?
by Lindsay » Mon, 2012-06-18 15:03
2
1,667 by Lindsay
Mon, 2014-04-21 06:47
Normal topic RosettaDOM
by ndousis » Sun, 2010-12-12 01:08
2
1,667 by ndousis
Mon, 2014-04-21 06:47
Normal topic ERROR: PDB reader is ignoring atom
by phanvy » Wed, 2014-04-16 17:59
2
1,669 by phanvy
Mon, 2014-04-21 03:58
Normal topic When does Rosetta switch from centroid to FA mode?
by MarkW » Fri, 2015-07-03 04:48
3
1,673 by rmoretti
Sun, 2015-07-05 14:28
Normal topic Problems in Loop Modeling
by jklett » Mon, 2009-10-19 07:26
2
1,674 by jklett
Mon, 2014-04-21 06:47
Normal topic Combine flags file with command line arguments?
by cossio » Mon, 2014-12-22 13:52
1
1,674 by smlewis
Tue, 2014-12-23 13:58
Normal topic Multigraft
by bo » Tue, 2013-12-24 18:06
2
1,676 by Sergey Menis
Mon, 2014-04-21 06:48
Normal topic Comparative modelling of dimer
by rt1108 » Fri, 2012-06-15 07:31
1
1,677 by smlewis
Mon, 2014-04-21 06:47
Normal topic fixbb program
by Lindsay » Tue, 2012-05-08 13:56
3
1,687 by AndrewLeaver-Fay
Mon, 2014-04-21 06:47
Normal topic interpreting score values in silent output file after running abinitiorelax
by burkheadlab » Wed, 2011-03-09 15:42
3
1,687 by smlewis
Mon, 2014-04-21 06:47
Normal topic why docking results are different?
by albumns » Sat, 2010-12-18 23:53
3
1,689 by smlewis
Mon, 2014-04-21 06:47
Normal topic Multiprocessor Execution
by starone » Tue, 2016-04-19 20:06
3
1,689 by smlewis
Thu, 2016-04-21 16:00
Normal topic I can't find the workflow about modeling disordered regsion using rosetta?
by lihowe » Thu, 2011-12-29 03:45
2
1,693 by wangyr
Mon, 2014-04-21 06:47
Normal topic Installing Rosetta Abinitio make_fragments.pl
by ctaylor » Thu, 2009-09-17 09:20
2
1,693 by ctaylor
Mon, 2014-04-21 06:47
Normal topic Error running snugdock
by SenyorDrew » Tue, 2017-03-14 10:00
5
1,695 by SenyorDrew
Wed, 2017-03-29 06:40
Normal topic disulfide bridges in loop modeling
by pledor » Fri, 2010-08-06 06:49
2
1,697 by pledor
Mon, 2014-04-21 06:47
Normal topic combine silent.out file
by venkatazb » Fri, 2016-07-22 05:22
1
1,697 by smlewis
Fri, 2016-07-22 07:31
Normal topic ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query!
by Anonymous » Sat, 2012-09-08 09:33
1
1,699 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Models which are not recorded (Abinitio protocol)
by allan.ferrari » Fri, 2015-08-28 13:39
3
1,707 by rmoretti
Thu, 2015-09-17 12:42
Normal topic CS-Rosetta fragments
by isengupta13 » Sun, 2010-05-16 08:08
1
1,707 by AndrewBworth
Mon, 2014-04-21 06:47
Normal topic calculate low-resolution total docking score for a input pdb
by jasnyderjr » Fri, 2015-12-11 23:08
3
1,719 by rmoretti
Wed, 2015-12-16 11:22
Normal topic obtaing pdb files
by knutjbj » Fri, 2011-02-25 11:05
3
1,726 by scombs
Mon, 2014-04-21 06:47
Normal topic manually changing fixbb residue ref energies
by jtmacd » Wed, 2009-11-25 08:43
4
1,729 by jtmacd
Mon, 2014-04-21 06:47
Normal topic How do I add virtual atom to my cofactor (metal ion) in rosettadock?
by monos_morpheus » Sat, 2011-02-05 21:24
2
1,730 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles?
by nh_prt » Tue, 2013-03-26 12:22
3
1,730 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to keep modeling ignored ERROR?
by eunwook » Sat, 2013-04-27 05:44
3
1,732 by eunwook
Mon, 2014-04-21 06:47
Normal topic Scoring when the protein is a different length
by gw » Wed, 2012-08-01 08:53
1
1,733 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error score_scatter_plot.py
by jrcf » Wed, 2015-12-30 05:46
2
1,735 by jrcf
Fri, 2016-02-12 16:41
Normal topic Rotamer Library Generation in Rosetta3
by jcminerlanl » Wed, 2016-11-30 07:34
3
1,738 by sk0319
Thu, 2017-01-05 17:07
Normal topic symmetric docking application rosetta3.2: the docking_local_refine flag
by doranhen » Sun, 2012-05-06 02:20
2
1,743 by doranhen
Mon, 2014-04-21 06:47
Normal topic generate full atom coordinates with abinitio rosetta structure prediction
by anusmita_sahoo » Tue, 2010-03-30 00:11
2
1,745 by Trentage
Mon, 2014-04-21 06:47
Normal topic Converting charmm parameter files (.par)
by ajasja » Mon, 2014-09-29 07:19
3
1,747 by jcminerlanl
Tue, 2017-12-19 14:03
Normal topic dna_denovo
by frits » Fri, 2013-07-12 06:12
3
1,750 by frits
Mon, 2014-04-21 06:48
Normal topic NOE constraints with Rosetta 3.1
by mpiuzzi » Wed, 2010-02-24 02:40
3
1,751 by mpiuzzi
Mon, 2014-04-21 06:47
Normal topic rosettautil module not imported cleanly by python scripts
by franfdez » Tue, 2013-08-27 01:25
1
1,756 by rmoretti
Mon, 2014-04-21 06:48
Normal topic [Mover] is not known to the MoverFactory
by Jhreed » Fri, 2016-08-05 12:23
4
1,757 by msardejani
Sun, 2016-08-07 17:49
Normal topic Successful installation on OpenSuse11.1 - tests?
by zharmad » Thu, 2010-08-19 00:30
4
1,766 by zharmad
Mon, 2014-04-21 06:47
Normal topic ERROR: f.check_fold_tree
by sudhar » Mon, 2010-08-23 08:59
3
1,767 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta Dock
by swoody » Tue, 2009-11-10 16:20
1
1,775 by smlewis
Mon, 2014-04-21 06:47
Normal topic Generating Fragment Libraries for Metal Binding Proteins
by buzb » Wed, 2011-01-26 12:43
1
1,777 by kaue
Mon, 2014-04-21 06:47
Normal topic -fake_native Error - not found in command line of rosetta 3.2.1
by vsjasion » Wed, 2011-10-05 12:01
2
1,780 by vsjasion
Mon, 2014-04-21 06:47
Normal topic How to generate score file for loop refinement or modelling?
by zhisheng » Fri, 2011-12-09 05:15
2
1,780 by zhisheng
Mon, 2014-04-21 06:47
Normal topic RNA Parameter File
by hdavis9 » Tue, 2010-07-06 11:36
4
1,782 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to keep native structure when do loop modeling
by zlni » Sun, 2009-05-03 10:12
4
1,782 by zlni
Mon, 2014-04-21 06:47
Normal topic How to generate constraints of active sites from a pdb file of an enzyme
by Albert » Sun, 2013-05-26 20:07
3
1,782 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic help with perturbation docking please
by einew » Fri, 2011-03-25 16:16
2
1,788 by einew
Mon, 2014-04-21 06:47
Normal topic could I add some constrain to the backbone but not completely fix it when relax?
by albumns » Tue, 2010-06-29 05:43
4
1,792 by smlewis
Mon, 2014-04-21 06:47
Normal topic a question about protein-ligand docking in generating 1SW2 conformers
by Ryhon Wang » Wed, 2014-05-28 22:27
2
1,796 by rmoretti
Tue, 2014-06-03 11:45
Normal topic log files
by shadrinams » Fri, 2018-01-26 07:29
7
1,796 by shadrinams
Mon, 2018-02-12 11:47
Normal topic fixbb and HETATM
by doranhen » Mon, 2013-01-14 07:50
2
1,801 by doranhen
Mon, 2014-04-21 06:47
Normal topic Using mode=profile
by Biokhar » Fri, 2012-07-06 00:29
2
1,806 by scombs
Mon, 2014-04-21 06:47
Normal topic question about scoring silent output files and their contents
by burkheadlab » Wed, 2011-07-27 16:28
2
1,807 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rigid Body & Flexible Minimization
by Hanieh » Thu, 2014-02-06 12:37
2
1,816 by Hanieh
Fri, 2014-02-28 12:43
Normal topic How to use Rosetta 3.1 to model the structure of an antibody?
by sylvia » Mon, 2009-10-26 14:06
2
1,820 by vanita
Mon, 2014-04-21 06:47
Normal topic Abinitio starts at the 27th amino acid
by JadAbbass » Thu, 2013-08-29 05:38
3
1,823 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic RosettaHoles?
by kbala » Thu, 2009-07-30 16:52
3
1,824 by smlewis
Mon, 2014-04-21 06:47
Normal topic the meaning of "maxsub" in score.fsc
by exchhattu » Tue, 2009-11-10 04:37
2
1,825 by smlewis
Mon, 2014-04-21 06:47
Normal topic dG/dsasa , What is the exact meaning?
by Apiwat » Sun, 2014-04-13 00:38
2
1,830 by Apiwat
Thu, 2014-04-17 09:56
Normal topic Solving van der waals clashes in a transmembrane protein model with rosetta
by doranhen » Wed, 2012-12-05 00:12
3
1,831 by smlewis
Mon, 2014-04-21 06:47
Normal topic spline constraint
by jadolfbr » Mon, 2012-06-25 04:43
3
1,843 by smlewis
Mon, 2014-04-21 06:47
Normal topic keep crystal structure hydrogens
by gw » Wed, 2011-07-20 03:54
2
1,847 by gw
Mon, 2014-04-21 06:47
Normal topic what option should I use if I want to use the dfire in 3.4
by Lindsay » Thu, 2012-04-12 05:19
3
1,848 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta Antibody Prepack - Problem HL_A vs. LH_A
by cannond » Fri, 2017-03-03 02:41
5
1,848 by cannond
Wed, 2017-03-08 03:00
Normal topic Simple FoldTree Question
by gipsonb » Wed, 2012-04-25 18:19
3
1,856 by gipsonb
Mon, 2014-04-21 06:47
Normal topic -loops:refine_repack_cycles option not accepted by loopmodel.linuxgccrelease
by tsjain » Tue, 2013-02-05 18:47
3
1,859 by tsjain
Mon, 2014-04-21 06:47
Normal topic The following options have been set but have not yet been used
by jrcf » Fri, 2015-10-09 10:48
2
1,860 by jrcf
Fri, 2015-10-16 10:57
Normal topic make_fragments
by sumukh21 » Wed, 2011-02-23 09:29
3
1,872 by sumukh21
Mon, 2014-04-21 06:47
Normal topic Parallel computing in RosettaDock3.1?
by xhluo » Fri, 2010-09-03 02:31
3
1,875 by smlewis
Mon, 2014-04-21 06:47
Normal topic Information about “membrane_highres_Menv_smooth.wts”
by Groros » Sun, 2011-10-02 03:59
3
1,879 by smlewis
Mon, 2014-04-21 06:47
Normal topic Comparison between two fragment pickers
by qlj » Mon, 2013-09-02 06:34
3
1,885 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Clustering and Protein Preparation for docking
by MRH » Sun, 2013-08-25 22:01
1
1,890 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Adding new files using rosetta classes went wrong
by Jeremy1990 » Sun, 2015-04-26 01:07
3
1,891 by rmoretti
Thu, 2015-04-30 16:09
Normal topic dG_separated threshold for identifying non-binding peptides with InterfaceAnalyzer.
by jyotisutar9 » Thu, 2016-12-01 00:39
6
1,898 by jyotisutar9
Wed, 2016-12-14 09:39
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