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Rosetta 3 - General

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Normal topic Which rosetta for antibody modelling?
by oppopomoz » Wed, 2013-04-24 09:10
2
1,668 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic How to generate a symmetry definition file for octahedral symmetry?
by Anonymous » Wed, 2012-08-15 05:20
0
1,673 by Anonymous
Mon, 2014-04-21 06:47
Normal topic how build (N-terminal 17 residues) structre /fragment file generation
by venkatazb » Wed, 2016-07-27 23:56
3
1,676 by smlewis
Fri, 2016-07-29 07:43
Normal topic changing the chain id
by aneamtu » Tue, 2018-01-09 00:08
2
1,676 by aneamtu
Thu, 2018-01-18 00:56
Normal topic Rescoring regions of structures
by erin_cutts » Mon, 2013-07-22 04:43
2
1,678 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic sequence_tolerance optimize the binding to chemical compounds
by coomteng@gmail.com » Tue, 2015-05-05 07:32
3
1,682 by rmoretti
Mon, 2015-05-25 11:00
Normal topic Having trouble producing a .pdb file from a silent output file after running abinitio relax
by burkheadlab » Wed, 2011-03-09 12:48
2
1,690 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3?
by jiongzhang » Fri, 2012-04-20 13:35
2
1,691 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Make_fragments.pl database
by TiagoGomes » Tue, 2009-10-13 11:31
2
1,695 by TiagoGomes
Mon, 2014-04-21 06:47
Normal topic Error when running "plot_LHOC.py"
by Sunyp_IM » Sun, 2017-08-13 05:54
5
1,696 by smlewis
Wed, 2017-08-16 08:30
Normal topic protein-protien docking with uniform trans
by lkingsle » Thu, 2012-02-09 07:19
1
1,696 by mpacella
Mon, 2014-04-21 06:47
Normal topic Docking failure
by khanhbinh » Sun, 2012-09-23 22:19
2
1,699 by khanhbinh
Mon, 2014-04-21 06:47
Normal topic Silent Files
by ctaylor » Tue, 2009-12-22 09:22
3
1,700 by smlewis
Mon, 2014-04-21 06:47
Normal topic # decoys of silent
by fred » Wed, 2014-04-02 06:00
3
1,701 by fred
Fri, 2014-04-04 11:34
Normal topic Potentially incorrect heavyAtoms_end() iterator in core/conformation/Residue.hh
by tsjain » Wed, 2012-08-15 12:20
3
1,702 by smlewis
Mon, 2014-04-21 06:47
Normal topic Explanations to membrane_abinitio options
by justin » Wed, 2010-02-10 01:14
3
1,703 by justin
Mon, 2014-04-21 06:47
Normal topic What is "residue packing", "repacking", and so on?
by cossio » Wed, 2014-12-03 08:49
2
1,703 by cossio
Wed, 2014-12-03 14:51
Normal topic double mutations scan
by Lindsay » Fri, 2012-04-27 12:51
2
1,706 by Lindsay
Mon, 2014-04-21 06:47
Normal topic No structure mods allowed during scoring! error
by jadolfbr » Wed, 2013-12-04 14:06
2
1,707 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Rosetta membrane prediction!
by wtscrystal » Tue, 2009-11-17 05:55
0
1,708 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic Problems compiling tests
by molon » Wed, 2009-09-30 07:33
2
1,708 by molon
Mon, 2014-04-21 06:47
Normal topic rosettaremodel
by berk » Fri, 2013-06-07 00:42
3
1,715 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Membrane AbInitio
by coxford » Sat, 2012-12-22 05:06
0
1,725 by coxford
Mon, 2014-04-21 06:47
Normal topic should rosetta3.1 do prepacking before docking?
by lqzhang » Thu, 2010-01-07 12:15
3
1,737 by smlewis
Mon, 2014-04-21 06:47
Normal topic Question about homology modelling
by DmitriiN » Sun, 2016-08-21 13:44
3
1,743 by smlewis
Mon, 2016-08-22 10:28
Normal topic Rosetta ab initio with disordered regions
by smiruthi » Thu, 2011-12-15 14:37
2
1,749 by smiruthi
Mon, 2014-04-21 06:47
Normal topic Rosetta CM incorrect threading
by ahmadkhalifa » Mon, 2018-08-06 11:09
6
1,750 by rmoretti
Fri, 2018-08-24 11:59
Normal topic cluster input_score_filter
by lj269 » Thu, 2011-09-01 15:29
2
1,754 by attesor
Fri, 2014-10-31 04:23
Normal topic ERROR: Unable to open file: ./1brs_0001.pdb
by dkeidel » Tue, 2009-09-29 17:46
1
1,755 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to remove clashes in peptide bonds and proline residue?
by Anatol » Fri, 2012-08-31 09:26
2
1,759 by Anatol
Mon, 2014-04-21 06:47
Normal topic Calling a Rosetta xml script in a Python script gives fail to validate error
by ahmadkhalifa » Tue, 2018-03-06 08:00
3
1,760 by rmoretti
Mon, 2018-03-19 12:35
Normal topic Loop modeling FLAGS
by jklett » Fri, 2009-12-04 02:45
3
1,761 by jklett
Mon, 2014-04-21 06:47
Normal topic ddG from backrub
by jte » Tue, 2010-10-05 14:09
3
1,762 by smlewis
Mon, 2014-04-21 06:47
Normal topic Documentation missing in MultiGraft
by aroop » Thu, 2012-03-15 07:39
2
1,763 by aroop
Mon, 2014-04-21 06:47
Normal topic "Local sequence-structure compatability" in "design of ideal protein structures"
by petrikigor » Sun, 2012-12-02 09:25
2
1,764 by petrikigor
Mon, 2014-04-21 06:47
Normal topic relax from a silent input file
by mintseris » Thu, 2010-04-29 19:54
2
1,765 by mintseris
Mon, 2014-04-21 06:47
Normal topic Pair potential
by jadolfbr » Thu, 2011-12-08 08:06
1
1,767 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddG backbone movement
by dave » Wed, 2012-10-03 03:23
2
1,770 by dave
Mon, 2014-04-21 06:47
Normal topic Error when using next-gen KIC (Signal 6)
by janwp » Tue, 2014-08-26 08:36
1
1,778 by amelie
Tue, 2014-09-30 14:29
Normal topic what is 05.2009 ideal coordinates
by Lindsay » Tue, 2014-09-23 20:36
3
1,781 by rmoretti
Mon, 2014-09-29 13:45
Normal topic Modelling a loopless structure
by jhbrown » Tue, 2011-11-22 11:39
2
1,787 by jhbrown
Mon, 2014-04-21 06:47
Normal topic Creation of core.* file in current running directory
by alejandro » Tue, 2011-12-06 06:19
2
1,787 by alejandro
Mon, 2014-04-21 06:47
Normal topic What is the difference between F and S labeled decoys?
by PaulaBanks » Tue, 2013-08-27 06:09
3
1,792 by PaulaBanks
Mon, 2014-04-21 06:48
Normal topic redesign a enzyme by fixing the active site
by Lindsay » Wed, 2012-03-07 08:23
2
1,795 by Lindsay
Mon, 2014-04-21 06:47
Normal topic rama vs p_aa_pp vs ref score terms
by jharamesh » Thu, 2015-12-03 14:24
1
1,797 by rmoretti
Thu, 2015-12-03 15:14
Normal topic Error using InterfaceHoles filter
by SenyorDrew » Fri, 2017-04-14 08:55
4
1,798 by SenyorDrew
Mon, 2017-07-24 11:06
Normal topic Loop Modeling
by ctaylor » Fri, 2009-12-18 11:42
3
1,799 by ctaylor
Mon, 2014-04-21 06:47
Normal topic How to modify disulfide bonds constrain in homology modeling
by eunwook » Mon, 2013-05-13 04:56
1
1,811 by smlewis
Mon, 2014-04-21 06:47
Normal topic Specifying sidechain NOE restraints in Relax!
by kalabharath » Mon, 2012-12-10 16:44
2
1,812 by kalabharath
Mon, 2014-04-21 06:47
Normal topic combine_silent ERROR: unknown atom_name: CYS SG
by freedman » Mon, 2017-03-06 10:56
5
1,813 by freedman
Mon, 2017-03-06 13:24
Normal topic Multiprocessing and running jobs on server using slurm
by ahmadkhalifa » Mon, 2018-04-09 10:59
1
1,813 by rmoretti
Tue, 2018-04-10 16:00
Normal topic model protein at low pH
by ytao » Mon, 2012-11-05 07:52
1
1,815 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaMatch in Rosetta3.2?
by SenyorDrew » Fri, 2010-08-13 07:47
1
1,817 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to use backrub in rosetta3.1
by lqzhang » Mon, 2010-01-11 14:43
3
1,823 by smlewis
Mon, 2014-04-21 06:47
Normal topic CDR Cluster Constrained Relax Equivalent
by SenyorDrew » Wed, 2016-04-27 08:04
3
1,824 by SenyorDrew
Tue, 2016-06-14 06:43
Normal topic How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS?
by Sunyp_IM » Thu, 2017-07-27 01:07
1
1,828 by SenyorDrew
Sat, 2017-07-29 09:59
Normal topic Rosetta membrane blastpgp/psiblast database problem for lips4 generation
by fbarrera » Tue, 2014-09-16 11:45
1
1,832 by rmoretti
Wed, 2014-09-17 10:06
Normal topic RosettaDOM
by ndousis » Sun, 2010-12-12 01:08
2
1,834 by ndousis
Mon, 2014-04-21 06:47
Normal topic AnchoredPDBcreator
by spraha » Wed, 2012-03-14 23:34
3
1,841 by smlewis
Mon, 2014-04-21 06:47
Normal topic Comparative modelling of dimer
by rt1108 » Fri, 2012-06-15 07:31
1
1,842 by smlewis
Mon, 2014-04-21 06:47
Normal topic CS-Rosetta fragments
by isengupta13 » Sun, 2010-05-16 08:08
1
1,845 by AndrewBworth
Mon, 2014-04-21 06:47
Normal topic RosettaProtein_Docking
by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28
1
1,852 by rmoretti
Fri, 2015-07-03 13:24
Normal topic Multigraft
by bo » Tue, 2013-12-24 18:06
2
1,854 by Sergey Menis
Mon, 2014-04-21 06:48
Normal topic get_distances command in rosetta 3.5
by pramod » Mon, 2014-01-20 11:31
3
1,854 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Question about run FLEXPEPDOCK with 3 chain
by phanvy » Wed, 2014-07-02 08:46
3
1,857 by phanvy
Wed, 2014-07-02 23:32
Normal topic Does the energy score output by fixbb design have unit?
by Lindsay » Mon, 2012-06-18 15:03
2
1,857 by Lindsay
Mon, 2014-04-21 06:47
Normal topic relax NOT CONVERGED
by albumns » Thu, 2010-06-24 21:25
3
1,857 by smlewis
Mon, 2014-04-21 06:47
Normal topic Combine flags file with command line arguments?
by cossio » Mon, 2014-12-22 13:52
1
1,860 by smlewis
Tue, 2014-12-23 13:58
Normal topic Only 430 models are generated for membrane prediction
by justin » Wed, 2010-01-06 00:04
3
1,863 by smlewis
Mon, 2014-04-21 06:47
Normal topic disulfide bridges in loop modeling
by pledor » Fri, 2010-08-06 06:49
2
1,870 by pledor
Mon, 2014-04-21 06:47
Normal topic Problems in Loop Modeling
by jklett » Mon, 2009-10-19 07:26
2
1,883 by jklett
Mon, 2014-04-21 06:47
Normal topic Installing Rosetta Abinitio make_fragments.pl
by ctaylor » Thu, 2009-09-17 09:20
2
1,884 by ctaylor
Mon, 2014-04-21 06:47
Normal topic ERROR: PDB reader is ignoring atom
by phanvy » Wed, 2014-04-16 17:59
2
1,893 by phanvy
Mon, 2014-04-21 03:58
Normal topic backrub score different from calculated score
by attesor » Wed, 2014-04-09 07:34
3
1,894 by rmoretti
Thu, 2014-04-10 07:38
Normal topic Residue variant types and fragments
by jadolfbr » Mon, 2013-01-21 09:01
2
1,898 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic The vall.jul19.2011.gz Database
by ac.research » Fri, 2017-09-01 02:29
4
1,899 by ac.research
Mon, 2017-09-04 16:43
Normal topic When does Rosetta switch from centroid to FA mode?
by MarkW » Fri, 2015-07-03 04:48
3
1,903 by rmoretti
Sun, 2015-07-05 14:28
Normal topic Modeling protonated histidine
by SenyorDrew » Mon, 2016-07-18 07:34
3
1,903 by matteoferla
Sat, 2017-08-05 07:18
Normal topic ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query!
by Anonymous » Sat, 2012-09-08 09:33
1
1,904 by Anonymous
Mon, 2014-04-21 06:47
Normal topic interpreting score values in silent output file after running abinitiorelax
by burkheadlab » Wed, 2011-03-09 15:42
3
1,906 by smlewis
Mon, 2014-04-21 06:47
Normal topic Errors in scorefiles after running Design
by Jhreed » Tue, 2016-03-29 10:25
4
1,908 by smlewis
Wed, 2016-03-30 09:52
Normal topic rosettautil module not imported cleanly by python scripts
by franfdez » Tue, 2013-08-27 01:25
1
1,912 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Scoring when the protein is a different length
by gw » Wed, 2012-08-01 08:53
1
1,913 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta Dock
by swoody » Tue, 2009-11-10 16:20
1
1,913 by smlewis
Mon, 2014-04-21 06:47
Normal topic span and frags filefor multichain transmembrane protein
by zhiguang » Wed, 2016-10-26 13:28
4
1,917 by zhiguang
Tue, 2016-11-15 12:27
Normal topic How do I add virtual atom to my cofactor (metal ion) in rosettadock?
by monos_morpheus » Sat, 2011-02-05 21:24
2
1,920 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Quesition about Relax Mode
by crysta11 » Wed, 2009-10-21 09:57
3
1,921 by smlewis
Mon, 2014-04-21 06:47
Normal topic fixbb program
by Lindsay » Tue, 2012-05-08 13:56
3
1,922 by AndrewLeaver-Fay
Mon, 2014-04-21 06:47
Normal topic Generating Fragment Libraries for Metal Binding Proteins
by buzb » Wed, 2011-01-26 12:43
1
1,925 by kaue
Mon, 2014-04-21 06:47
Normal topic DomainAssembly Mover with constraints (using RosettaScripts)
by resiros » Wed, 2016-09-21 11:19
3
1,928 by rmoretti
Mon, 2016-11-14 14:21
Normal topic generate full atom coordinates with abinitio rosetta structure prediction
by anusmita_sahoo » Tue, 2010-03-30 00:11
2
1,928 by Trentage
Mon, 2014-04-21 06:47
Normal topic obtaing pdb files
by knutjbj » Fri, 2011-02-25 11:05
3
1,928 by scombs
Mon, 2014-04-21 06:47
Normal topic I can't find the workflow about modeling disordered regsion using rosetta?
by lihowe » Thu, 2011-12-29 03:45
2
1,929 by wangyr
Mon, 2014-04-21 06:47
Normal topic why docking results are different?
by albumns » Sat, 2010-12-18 23:53
3
1,933 by smlewis
Mon, 2014-04-21 06:47
Normal topic Models which are not recorded (Abinitio protocol)
by allan.ferrari » Fri, 2015-08-28 13:39
3
1,937 by rmoretti
Thu, 2015-09-17 12:42
Normal topic AtomPair and SPLINE
by attesor » Sat, 2015-06-20 11:42
2
1,947 by attesor
Thu, 2015-10-22 03:42
Normal topic NOE constraints with Rosetta 3.1
by mpiuzzi » Wed, 2010-02-24 02:40
3
1,965 by mpiuzzi
Mon, 2014-04-21 06:47
Normal topic manually changing fixbb residue ref energies
by jtmacd » Wed, 2009-11-25 08:43
4
1,969 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Antibody Homology Modeling - Antibody vs. Antibody_legacy
by cannond » Tue, 2017-02-14 05:53
4
1,971 by cannond
Wed, 2017-03-01 08:05
Normal topic change DOF of NH3 group in N terminus
by SergeyP » Wed, 2016-02-03 02:22
3
1,971 by SergeyP
Thu, 2016-02-04 00:07
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