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Rosetta 3 - General
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Problem with ClashCountCalculator by masterofpuppets » Wed, 2015-01-07 04:47 |
2 |
2,792 |
by rmoretti Fri, 2015-01-09 10:59 |
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all-atom refinement with Relax application by zwenthor » Mon, 2010-02-15 22:45 |
2 |
2,940 |
by zwenthor Mon, 2014-04-21 06:47 |
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Error using ddg_monomer application (Assertion `pose.residue(resnum).name1() == wt` failed) by sgaray » Thu, 2021-06-24 14:47 |
2 |
2,517 |
by sgaray Fri, 2021-06-25 11:26 |
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Selecting Top Scoring Decoys by kalabharath » Thu, 2011-10-20 22:08 |
2 |
2,927 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to minimize only a few key residues' orientation by Ronghai Cheng » Mon, 2018-11-05 18:37 |
2 |
2,525 |
by Ronghai Cheng Tue, 2018-11-13 21:56 |
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The hbond for REF2015 by asbelx » Mon, 2022-06-06 06:07 |
2 |
1,155 |
by asbelx Mon, 2022-06-06 23:15 |
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Converting all residues to poly-Gly/Ala by jtpi6174 » Tue, 2023-05-09 14:14 |
2 |
713 |
by jtpi6174 Tue, 2023-05-09 15:51 |
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Why I_sc of Rosetta 2016.02 and 2018.21 are so different? by eminegenetics » Mon, 2018-07-16 12:51 |
2 |
2,433 |
by eminegenetics Wed, 2018-07-18 13:48 |
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Negative design: Can a filter call a mover in rosetta scripts? by jgans » Sat, 2012-09-08 21:28 |
2 |
3,662 |
by rmoretti Mon, 2014-04-21 06:47 |
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RosettaDesign by ac.research » Sun, 2019-07-21 01:20 |
2 |
3,458 |
by ac.research Sat, 2019-08-03 08:12 |
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RosettaCM: adding constraints while keeping AUTO constraints by Michele.Bonus » Sun, 2020-08-30 10:42 |
2 |
1,863 |
by Michele.Bonus Sun, 2020-08-30 23:06 |
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clustering PDBs from docking by jbujons » Wed, 2024-04-24 08:34 |
2 |
110 |
by jbujons Wed, 2024-04-24 09:34 |
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Rosetta releases and revision numbers by ShaneOConnor » Thu, 2011-11-17 13:55 |
2 |
4,685 |
by smlewis Mon, 2014-04-21 06:47 |
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fixbb and HETATM by doranhen » Mon, 2013-01-14 07:50 |
2 |
3,622 |
by doranhen Mon, 2014-04-21 06:47 |
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Add hemes to cytochrome structures by BuddySphinx » Sun, 2018-12-16 13:46 |
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2,138 |
by rmoretti Fri, 2019-03-29 14:43 |
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different relaxed energy scores for one same protein structure by ivareve125 » Sun, 2023-07-16 17:54 |
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608 |
by ivareve125 Mon, 2023-07-17 17:37 |
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How to recover out files when run crashs by samuelrpita » Tue, 2015-07-28 12:54 |
2 |
3,066 |
by samuelrpita Thu, 2015-08-06 14:23 |
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Ddg calculation for a metalloprotein using APBS by dfcoelho » Tue, 2019-11-19 10:06 |
2 |
1,855 |
by dfcoelho Wed, 2019-11-20 05:39 |
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Should all input structures to energy_based_clustering have an output pdb file? by Brian Wiley » Mon, 2023-01-30 20:42 |
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804 |
by Brian Wiley Tue, 2023-01-31 19:08 |
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Basic help with Protein-DNA and Protein-Protein modeling and engineering by Robert Evans » Sat, 2013-08-17 12:21 |
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3,878 |
by Robert Evans Mon, 2014-04-21 06:48 |
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Can't read constraint type by allan.ferrari » Fri, 2015-08-28 12:33 |
2 |
2,911 |
by allan.ferrari Mon, 2015-09-21 21:54 |
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Reading chloride anions by Martin Floor » Mon, 2018-08-27 14:29 |
2 |
2,465 |
by Martin Floor Tue, 2018-08-28 13:21 |
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Issues with angle Constraints during Docking by LeonhardJS » Thu, 2021-01-28 04:40 |
2 |
1,775 |
by LeonhardJS Fri, 2021-01-29 01:12 |
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Truncating a protein using rosetta by Wexter300 » Mon, 2023-02-13 12:05 |
2 |
742 |
by Wexter300 Mon, 2023-02-13 13:04 |
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Abinitio Structure Prediction - Sanity Test by westleys » Tue, 2010-06-01 00:28 |
2 |
3,108 |
by westleys Mon, 2014-04-21 06:47 |
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Parametrisation problems by DmitriiN » Tue, 2016-05-31 09:37 |
2 |
2,522 |
by DmitriiN Wed, 2016-06-01 15:46 |
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make fragments for a loop by jarod » Mon, 2010-03-15 07:31 |
2 |
2,866 |
by jarod Mon, 2014-04-21 06:47 |
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RestrictToRepackingRLT and PreventRepackingRLT by coomteng@gmail.com » Mon, 2018-03-05 11:19 |
2 |
2,615 |
by coomteng@gmail.com Tue, 2018-03-06 02:31 |
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Installing Rosetta Abinitio make_fragments.pl by ctaylor » Thu, 2009-09-17 09:20 |
2 |
3,466 |
by ctaylor Mon, 2014-04-21 06:47 |
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Problems compiling tests by molon » Wed, 2009-09-30 07:33 |
2 |
3,132 |
by molon Mon, 2014-04-21 06:47 |
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Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3? by jiongzhang » Fri, 2012-04-20 13:35 |
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2,940 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fitting a structure with an unrecognized residue to an EM density by ahmadkhalifa » Tue, 2017-12-05 14:44 |
2 |
2,306 |
by ahmadkhalifa Wed, 2017-12-06 12:30 |
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Segfault with docking protocol by almeida85 » Mon, 2021-02-08 06:39 |
2 |
1,493 |
by almeida85 Mon, 2021-02-08 09:50 |
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Protein Docking Error by ac.research » Thu, 2017-08-17 02:57 |
2 |
2,350 |
by ac.research Fri, 2017-08-18 00:53 |
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error running rosetta3.1 demos by lvtun » Thu, 2010-10-21 20:43 |
2 |
3,154 |
by lvtun Mon, 2014-04-21 06:47 |
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Rosetta ab initio with disordered regions by smiruthi » Thu, 2011-12-15 14:37 |
2 |
2,972 |
by smiruthi Mon, 2014-04-21 06:47 |
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constraints by lah435 » Sun, 2017-03-12 03:25 |
2 |
2,424 |
by lah435 Mon, 2017-04-03 19:50 |
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MSDMover error in RECON protocol by yifeili1983 » Mon, 2019-04-01 00:44 |
2 |
2,021 |
by yifeili1983 Mon, 2019-04-15 22:34 |
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SnugDock equivalent in newer Rosetta code by SenyorDrew » Tue, 2016-03-29 09:16 |
2 |
2,795 |
by SenyorDrew Wed, 2016-04-06 10:52 |
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where is PyIgClassfiy.py ? by mxp » Tue, 2020-07-07 23:57 |
2 |
1,784 |
by mxp Wed, 2020-07-08 23:25 |
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Energy updates in Rosetta 3.3 by gipsonb » Tue, 2011-10-11 09:58 |
2 |
2,720 |
by gipsonb Mon, 2014-04-21 06:47 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
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3,004 |
by DanielK Mon, 2014-04-21 06:47 |
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What is a "silent file"? by lanselibai » Mon, 2014-09-22 02:43 |
2 |
7,106 |
by lanselibai Mon, 2014-09-22 08:13 |
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H3 modelling scoring function by aneamtu » Wed, 2017-12-27 23:10 |
2 |
2,305 |
by aneamtu Mon, 2018-01-08 23:49 |
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-ignore_unrecognized_res doesn't work by e3lm » Fri, 2022-05-06 14:47 |
2 |
1,293 |
by e3lm Fri, 2022-05-06 16:10 |
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FixBB design design_contrast by swoody » Tue, 2009-06-30 11:48 |
2 |
2,951 |
by swoody Mon, 2014-04-21 06:47 |
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Extracting PDBs from a Silent file: "Can't find residue type for ARG" by avsrivatsa » Sat, 2020-10-17 16:20 |
2 |
1,868 |
by avsrivatsa Mon, 2020-10-19 18:16 |
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PIPER-FlexPepDock protocol file apply_ftresult.py missing by diasmarieli » Thu, 2021-11-04 06:33 |
2 |
1,662 |
by diasmarieli Fri, 2021-11-26 05:11 |
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rna_denovo and minize_rna by frits » Wed, 2013-07-10 00:22 |
2 |
3,163 |
by frits Mon, 2014-04-21 06:48 |
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Chi values for side chains when switching from centroid mode by MarkW » Fri, 2015-07-03 04:43 |
2 |
2,748 |
by MarkW Fri, 2015-07-03 15:36 |
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relax from a silent input file by mintseris » Thu, 2010-04-29 19:54 |
2 |
3,049 |
by mintseris Mon, 2014-04-21 06:47 |
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Which rosetta for antibody modelling? by oppopomoz » Wed, 2013-04-24 09:10 |
2 |
3,079 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Question about CartesianMD by orionshih » Sun, 2018-04-29 21:07 |
2 |
2,140 |
by orionshih Tue, 2018-05-01 21:16 |
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Why does the sum of the per-residue total energy not match the whole score? by matteoferla » Fri, 2021-07-09 08:36 |
2 |
1,669 |
by matteoferla Mon, 2021-07-12 02:23 |
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help with perturbation docking please by einew » Fri, 2011-03-25 16:16 |
2 |
3,175 |
by einew Mon, 2014-04-21 06:47 |
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ERROR:: Exit from: src/core/fragment/ConstantLengthFragSet.cc line: 116 by phanvy » Wed, 2014-10-08 22:28 |
2 |
3,105 |
by phanvy Wed, 2014-10-15 21:41 |
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rama energy term and explicit zero by SergeyP » Sat, 2015-12-19 05:25 |
2 |
2,935 |
by SergeyP Sun, 2015-12-20 01:44 |
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Calibur-linux binary or source code availability? by jasnyderjr » Sat, 2016-12-10 23:36 |
2 |
2,893 |
by jadolfbr Sun, 2016-12-11 10:53 |
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clean_pdb.py by duz » Wed, 2021-03-24 13:36 |
2 |
2,365 |
by duz Thu, 2021-04-01 09:34 |
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PDB HETATM by hwillis » Thu, 2009-08-06 12:03 |
2 |
4,331 |
by smlewis Mon, 2014-04-21 06:47 |
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How do I add virtual atom to my cofactor (metal ion) in rosettadock? by monos_morpheus » Sat, 2011-02-05 21:24 |
2 |
3,405 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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AbInitioRelax.mpi Hangs - Waiting for Job Request by nleroy » Thu, 2019-10-31 07:30 |
2 |
2,216 |
by nleroy Fri, 2019-11-08 12:44 |
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Rescoring regions of structures by erin_cutts » Mon, 2013-07-22 04:43 |
2 |
3,133 |
by erin_cutts Mon, 2014-04-21 06:48 |
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recommended function type for cross links data by meravb » Sun, 2018-08-05 06:57 |
2 |
2,091 |
by rmoretti Mon, 2018-08-20 11:51 |
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Performace Benchmarking by Tushar Kush » Wed, 2019-12-04 02:50 |
2 |
2,610 |
by smlewis Wed, 2019-12-04 13:07 |
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Minimizing across jumps by SenyorDrew » Thu, 2017-07-06 06:26 |
2 |
2,573 |
by SenyorDrew Thu, 2017-07-06 07:48 |
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multi state protein design by rohi » Fri, 2020-09-04 08:14 |
2 |
1,970 |
by rmoretti Tue, 2021-02-09 13:45 |
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total_score changes when decomposing bb hbonds ref2015 by Liviu Copoiu » Mon, 2022-10-31 15:40 |
2 |
907 |
by Liviu Copoiu Mon, 2022-10-31 16:03 |
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filter score by I_sc and keep top 1000 by aaj » Tue, 2016-01-19 07:13 |
2 |
2,933 |
by aaj Mon, 2016-02-22 07:43 |
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Different weights in the constraints for each stage of AbinitioRelax by allan.ferrari » Sun, 2017-01-15 04:35 |
2 |
2,751 |
by smlewis Sun, 2017-01-15 18:10 |
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Radius of Gyration by ctaylor » Mon, 2009-09-21 12:45 |
2 |
4,333 |
by ctaylor Mon, 2014-04-21 06:47 |
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constrain files tutorial by knutjbj » Fri, 2011-02-18 23:57 |
2 |
2,778 |
by smlewis Mon, 2014-04-21 06:47 |
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Is CST_Design required for enzdes protocol? by dasdevashishdas » Mon, 2018-09-03 00:51 |
2 |
2,382 |
by dasdevashishdas Thu, 2018-09-27 03:35 |
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What is the best way to make a residue-specific SASA constraint? by jmaly » Thu, 2020-01-23 16:40 |
2 |
2,429 |
by matteoferla Wed, 2020-01-29 12:18 |
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problem plotting results from docking_analyser with provided Rscript by madammolecular » Mon, 2021-02-01 14:44 |
2 |
1,619 |
by amystevens Thu, 2021-09-30 14:18 |
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Weekly releases for commercial users? by rjacak » Tue, 2022-03-22 07:48 |
2 |
1,252 |
by rjacak Thu, 2022-03-31 10:53 |
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loop file by banshee » Tue, 2013-06-04 13:26 |
2 |
2,818 |
by banshee Mon, 2014-04-21 06:48 |
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Score Differences between Ab Initio Scoring and Rescore by mmarlett » Wed, 2016-06-15 09:14 |
2 |
2,704 |
by mmarlett Thu, 2016-06-16 07:06 |
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Design with non-canonical amino acids (NCAA) by yinasun » Mon, 2019-08-05 00:34 |
2 |
2,516 |
by matteoferla Thu, 2019-08-22 05:39 |
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jd2 time out error by ytao » Mon, 2013-03-04 20:47 |
2 |
2,776 |
by ytao Mon, 2014-04-21 06:47 |
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Unable to download Rosetta by Yair Tenorio » Mon, 2023-10-23 11:48 |
2 |
483 |
by Yair Tenorio Mon, 2023-10-23 12:29 |
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I can't find the workflow about modeling disordered regsion using rosetta? by lihowe » Thu, 2011-12-29 03:45 |
2 |
3,125 |
by wangyr Mon, 2014-04-21 06:47 |
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Does the energy score output by fixbb design have unit? by Lindsay » Mon, 2012-06-18 15:03 |
2 |
3,127 |
by Lindsay Mon, 2014-04-21 06:47 |
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Configuration of Robetta fragment libraries by Run » Fri, 2014-01-24 23:03 |
2 |
3,073 |
by Run Mon, 2014-04-21 06:48 |
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loop design by varma » Sun, 2012-11-04 21:25 |
2 |
4,038 |
by varma Mon, 2014-04-21 06:47 |
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Jump::random_trans strange behavior by SergeyP » Tue, 2015-11-03 07:56 |
2 |
2,672 |
by SergeyP Sat, 2015-12-19 05:20 |
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How to transform a pose from symmetric into non-symmetric? by msardejani » Tue, 2016-10-04 16:55 |
2 |
2,637 |
by msardejani Wed, 2016-10-05 10:53 |
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error when running beta_strand_homodimer_design by szypanther » Sun, 2014-05-25 20:22 |
2 |
3,640 |
by szypanther Mon, 2014-05-26 22:03 |
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Ineffective Constraints by Sandy » Tue, 2017-09-05 19:36 |
2 |
2,390 |
by CameronJA Wed, 2022-01-19 20:50 |
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Predict the N-terminal of a protein by aliaselin » Mon, 2010-11-08 03:23 |
2 |
2,636 |
by smlewis Mon, 2014-04-21 06:47 |
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Generate structural fragments by kingljy » Tue, 2011-05-10 20:18 |
2 |
5,170 |
by pepfolder Mon, 2014-04-21 06:47 |
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How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers? by johnnytam100 » Wed, 2019-05-08 02:30 |
2 |
2,843 |
by johnnytam100 Wed, 2019-05-15 18:45 |
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Checkpoints in Rosetta by exchhattu » Mon, 2009-10-19 17:47 |
2 |
3,119 |
by exchhattu Mon, 2014-04-21 06:47 |
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The -symmetry:perturb_rigid_body_dofs flag by doranhen » Sat, 2012-04-28 13:01 |
2 |
2,859 |
by doranhen Mon, 2014-04-21 06:47 |
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Write PDB with multiple side-chain configurations by pachecoj » Tue, 2014-09-30 21:42 |
2 |
3,070 |
by pachecoj Thu, 2014-10-09 18:15 |
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Expanding the silent file by jharamesh » Fri, 2018-01-12 09:15 |
2 |
2,135 |
by rmoretti Mon, 2018-01-15 14:35 |
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Structure Prediction: Max Sequence Length? by jcsaborio » Tue, 2009-07-14 12:10 |
2 |
4,079 |
by jcsaborio Mon, 2014-04-21 06:47 |
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Undocumented changes in BackrubDD by abhi_pe_acharya » Mon, 2018-07-16 00:24 |
2 |
2,108 |
by abhi_pe_acharya Sun, 2018-08-05 22:03 |
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protein surface design by tatsiana.bylund » Sun, 2019-09-15 03:44 |
2 |
2,025 |
by dfcoelho Tue, 2019-11-19 10:16 |
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fixbb design use by Lindsay » Fri, 2012-03-23 09:05 |
2 |
2,906 |
by Lindsay Mon, 2014-04-21 06:47 |
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