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Rosetta 3 - General

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Normal topic ERROR: unrecognized atomtype property VIRTUAL
by harshkhare » Mon, 2011-11-14 09:40
3
1,980 by harshkhare
Mon, 2014-04-21 06:47
Normal topic Questions about Monte Carlo Simulated Annealing algorithm in the design protocols
by mdyini » Thu, 2012-05-31 12:39
3
3,414 by smlewis
Mon, 2014-04-21 06:47
Normal topic fix backbone design of interface residue
by Lindsay » Tue, 2013-12-17 19:23
3
2,445 by rmoretti
Mon, 2014-04-21 06:48
Normal topic change DOF of NH3 group in N terminus
by SergeyP » Wed, 2016-02-03 02:22
3
1,702 by SergeyP
Thu, 2016-02-04 00:07
Normal topic RosettaHoles?
by kbala » Thu, 2009-07-30 16:52
3
1,865 by smlewis
Mon, 2014-04-21 06:47
Normal topic Criteria on the calculation of Irmsd of the protein-protein interface
by yzq » Tue, 2012-02-21 07:06
3
2,419 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to output a structure when scoring it?
by tianbu » Tue, 2012-07-31 09:38
3
2,402 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Weird results from flexpepdock MPI
by gerdos » Fri, 2016-06-24 01:18
3
1,225 by smlewis
Thu, 2016-06-30 08:44
Normal topic Docking 2 proteins including ligands
by einew » Tue, 2011-03-08 13:33
3
1,942 by einew
Mon, 2014-04-21 06:47
Normal topic Abinitio starts at the 27th amino acid
by JadAbbass » Thu, 2013-08-29 05:38
3
1,847 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic Constraints and final scoring of satisfied constraints in ab initio
by Azadeh » Tue, 2014-07-15 01:29
3
4,136 by rmoretti
Thu, 2014-07-17 09:21
Normal topic error for the pose reading:TRP:NtermProteinFull:triazolamerC missing: C1
by wyb » Fri, 2017-12-01 17:50
3
1,070 by rmoretti
Sat, 2017-12-16 12:19
Normal topic Side-chain packing with multiple chains
by pachecoj » Mon, 2014-04-21 16:53
3
2,416 by jadolfbr
Mon, 2014-04-21 21:05
Normal topic score terms
by qlj » Wed, 2013-07-03 08:00
3
2,234 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Modeling protonated histidine
by SenyorDrew » Mon, 2016-07-18 07:34
3
1,609 by matteoferla
Sat, 2017-08-05 07:18
Normal topic why docking results are different?
by albumns » Sat, 2010-12-18 23:53
3
1,728 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to make a combined PDB file?
by fenghc » Mon, 2013-04-01 06:27
3
10,900 by smlewis
Mon, 2014-04-21 06:47
Normal topic Segmentation fault
by Hongtham » Mon, 2014-12-15 20:21
3
2,757 by Sandy
Fri, 2015-08-07 15:49
Normal topic Abinitio Video
by ac.research » Tue, 2017-09-12 04:00
3
992 by ac.research
Sun, 2017-09-24 11:25
Normal topic force field, energy function
by masterofpuppets » Wed, 2015-01-21 11:06
3
2,863 by masterofpuppets
Tue, 2015-01-27 07:07
Normal topic Multiprocessor Execution
by starone » Tue, 2016-04-19 20:06
3
1,726 by smlewis
Thu, 2016-04-21 16:00
Normal topic rosetta on snow leopard?
by nitroamos » Thu, 2009-10-01 17:07
3
2,449 by nitroamos
Mon, 2014-04-21 06:47
Normal topic is it possbile to cluster pdb files?
by albumns » Wed, 2010-10-06 02:38
3
3,073 by smlewis
Mon, 2014-04-21 06:47
Normal topic Getting an interface score from RosettaDock without docking
by rosend » Fri, 2015-12-18 14:02
3
2,960 by rosend
Fri, 2015-12-18 19:39
Normal topic General protein-protein docking when no info. on structure is availble
by jasnyderjr » Fri, 2016-12-09 04:55
3
1,304 by smlewis
Tue, 2016-12-20 10:40
Normal topic Rosetta lack of necessary application
by ylwang » Wed, 2018-11-07 01:13
3
572 by rmoretti
Wed, 2018-11-21 13:50
Normal topic Rescoring protein docking decoys to get Irms
by lj269 » Thu, 2014-10-23 13:23
3
2,126 by rmoretti
Wed, 2014-10-29 14:30
Normal topic De novo density assembly weights don't add up to a 100
by ahmadkhalifa » Fri, 2018-08-03 12:07
3
386 by rmoretti
Tue, 2019-10-22 07:05
Normal topic Does Rosetta have a class diagram for each class in the source code?
by ylwang » Thu, 2019-11-21 04:24
3
93 by ylwang
Sat, 2019-11-23 06:26
Normal topic Silent Files
by ctaylor » Tue, 2009-12-22 09:22
3
1,501 by smlewis
Mon, 2014-04-21 06:47
Normal topic NC atom type [Solved]
by franfdez » Tue, 2012-02-07 16:05
3
2,157 by franfdez
Mon, 2014-04-21 06:47
Normal topic how to identify selected interface residues
by vijayaraj81 » Mon, 2014-03-31 01:40
3
2,010 by rmoretti
Tue, 2014-04-01 08:12
Normal topic ligand docking with rosetta_scripts.linuxgccrelease
by xpzhang » Thu, 2015-02-26 10:57
3
2,164 by rmoretti
Mon, 2015-03-30 16:58
Normal topic Cyclizing .pdb of a linear chain.
by jcminerlanl » Wed, 2017-07-05 23:56
3
1,109 by jcminerlanl
Thu, 2017-07-06 09:22
Normal topic Calling a Rosetta xml script in a Python script gives fail to validate error
by ahmadkhalifa » Tue, 2018-03-06 08:00
3
867 by rmoretti
Mon, 2018-03-19 12:35
Normal topic loop modeling
by MRH » Thu, 2013-08-22 23:19
3
2,118 by MRH
Mon, 2014-04-21 06:48
Normal topic Conversion from Dihedral angle representation to Cartesian representation
by rodrigo.faccioli » Sat, 2012-02-25 11:57
3
12,915 by charlie.strauss
Fri, 2016-09-02 10:08
Normal topic Adding new files using rosetta classes went wrong
by Jeremy1990 » Sun, 2015-04-26 01:07
3
1,925 by rmoretti
Thu, 2015-04-30 16:09
Normal topic build local user guide
by coomteng@gmail.com » Wed, 2018-03-28 13:55
3
665 by coomteng@gmail.com
Wed, 2018-03-28 14:58
Normal topic Determine the weights of score functions
by SunH » Thu, 2010-09-02 07:20
3
2,607 by smlewis
Mon, 2014-04-21 06:47
Normal topic what's the difference between recovery and sequence identity
by Lindsay » Thu, 2012-04-26 05:46
3
2,333 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to get the GDT_TS?
by JadAbbass » Thu, 2013-09-05 11:59
3
2,919 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Peripheral membrane protein modeling
by Fukiishi » Tue, 2018-10-02 02:09
3
624 by matteoferla
Thu, 2018-10-04 01:30
Normal topic dna_denovo
by frits » Fri, 2013-07-12 06:12
3
1,786 by frits
Mon, 2014-04-21 06:48
Normal topic does rosetta good at peptide-protein docking?
by albumns » Mon, 2010-12-27 18:51
3
3,405 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with running turtorial of rna denovo
by myle » Fri, 2017-04-14 09:23
3
1,015 by rmoretti
Tue, 2017-04-18 13:49
Normal topic Converting charmm parameter files (.par)
by ajasja » Mon, 2014-09-29 07:19
3
1,784 by jcminerlanl
Tue, 2017-12-19 14:03
Normal topic Rosetta-based projects using and licensing
by SergeyP » Fri, 2018-10-26 15:45
3
653 by SergeyP
Mon, 2018-11-12 09:19
Normal topic Explanations to membrane_abinitio options
by justin » Wed, 2010-02-10 01:14
3
1,512 by justin
Mon, 2014-04-21 06:47
Normal topic ddG = dGmutant ‐ dGwildtype
by ela » Thu, 2018-07-26 09:17
3
843 by ela
Thu, 2018-08-09 08:04
Normal topic How to model a protein that dimerizes to a small molecule?
by pholland » Wed, 2011-05-25 07:29
3
2,754 by pholland
Mon, 2014-04-21 06:47
Normal topic how to keep modeling ignored ERROR?
by eunwook » Sat, 2013-04-27 05:44
3
1,765 by eunwook
Mon, 2014-04-21 06:47
Normal topic running Rosetta locally using commands generated by the Robetta web server
by cneale » Sat, 2014-03-15 11:48
3
2,202 by cneale
Fri, 2014-03-21 18:13
Normal topic Hydrogen bond detection and shape complementarity
by sujigeorge1979 » Fri, 2019-06-14 02:39
3
366 by sujigeorge1979
Thu, 2019-06-27 01:30
Normal topic Is it better to have smaller nstruct but many runs?
by Loki01 » Mon, 2018-11-19 11:50
3
514 by smlewis
Mon, 2018-11-19 13:20
Normal topic How to dock 3 missing domains onto a multi-domain protein
by tevang » Sun, 2011-04-10 15:22
3
2,872 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta relax application for generating ensemble of structures.
by abhi_pe_acharya » Mon, 2018-02-26 09:08
3
801 by ssrb
Tue, 2018-03-06 14:15
Normal topic Question about homology modelling
by DmitriiN » Sun, 2016-08-21 13:44
3
1,477 by smlewis
Mon, 2016-08-22 10:28
Normal topic should rosetta3.1 do prepacking before docking?
by lqzhang » Thu, 2010-01-07 12:15
3
1,542 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fragments for short peptides using Robetta
by renedominik » Wed, 2018-05-16 14:21
3
865 by renedominik
Mon, 2018-06-04 00:04
Normal topic relax NOT CONVERGED
by albumns » Thu, 2010-06-24 21:25
3
1,656 by smlewis
Mon, 2014-04-21 06:47
Normal topic Troubles using RigidBodyTransMover and RigidBodyPerturbMover
by alejandro » Thu, 2011-04-21 06:11
3
2,003 by alejandro
Mon, 2014-04-21 06:47
Normal topic force point mutation with fixbb
by Anonymous » Wed, 2012-06-13 09:15
3
1,976 by smlewis
Mon, 2014-04-21 06:47
Normal topic cluster error
by albumns » Sun, 2011-03-06 03:02
3
2,614 by smlewis
Mon, 2014-04-21 06:47
Normal topic What is the difference between F and S labeled decoys?
by PaulaBanks » Tue, 2013-08-27 06:09
3
1,610 by PaulaBanks
Mon, 2014-04-21 06:48
Normal topic Potentially incorrect heavyAtoms_end() iterator in core/conformation/Residue.hh
by tsjain » Wed, 2012-08-15 12:20
3
1,520 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosettaremodel
by berk » Fri, 2013-06-07 00:42
3
1,522 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic sequence_tolerance optimize the binding to chemical compounds
by coomteng@gmail.com » Tue, 2015-05-05 07:32
3
1,469 by rmoretti
Mon, 2015-05-25 11:00
Normal topic spline constraint
by jadolfbr » Mon, 2012-06-25 04:43
3
1,884 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to get reliable results for carbohydrate docking?
by albumns » Sun, 2010-09-05 23:12
3
2,978 by smlewis
Mon, 2014-04-21 06:47
Normal topic The question about  protonation of Rosetta
by asbelx » Tue, 2017-12-19 05:44
3
1,145 by rmoretti
Mon, 2018-01-15 15:34
Normal topic Unrecognized aa NO3
by JadAbbass » Sun, 2013-07-14 10:48
3
2,279 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic Loop modeling FLAGS
by jklett » Fri, 2009-12-04 02:45
3
1,573 by jklett
Mon, 2014-04-21 06:47
Normal topic ddG from backrub
by jte » Tue, 2010-10-05 14:09
3
1,567 by smlewis
Mon, 2014-04-21 06:47
Normal topic fixbb program
by Lindsay » Tue, 2012-05-08 13:56
3
1,720 by AndrewLeaver-Fay
Mon, 2014-04-21 06:47
Normal topic How to use RotamerDump to access one and two-body energy tables?
by msun » Wed, 2013-01-16 12:26
3
1,434 by msun
Mon, 2014-04-21 06:47
Normal topic Possible Shellshock Patch problem results in no output files being written
by hazards » Wed, 2014-10-22 13:48
3
4,308 by rmoretti
Mon, 2014-11-03 16:39
Normal topic [dev] determine which score_type's enabled in create_energy_method?
by ipetrik_ambry » Fri, 2017-10-27 15:37
3
778 by rmoretti
Mon, 2017-10-30 12:02
Normal topic Loop Modeling
by ctaylor » Fri, 2009-12-18 11:42
3
1,593 by ctaylor
Mon, 2014-04-21 06:47
Normal topic loop modeling
by isengupta13 » Wed, 2011-06-01 15:00
3
2,247 by smlewis
Mon, 2014-04-21 06:47
Normal topic Clarify ProteinInterfaceDesign “randomness”
by tsztain » Wed, 2019-02-27 09:41
3
432 by rmoretti
Sat, 2019-03-30 12:12
Normal topic "CEN" atom in the pdb file
by wszjzhang » Wed, 2010-03-17 14:35
3
2,543 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic what option should I use if I want to use the dfire in 3.4
by Lindsay » Thu, 2012-04-12 05:19
3
1,892 by smlewis
Mon, 2014-04-21 06:47
Normal topic Models which are not recorded (Abinitio protocol)
by allan.ferrari » Fri, 2015-08-28 13:39
3
1,734 by rmoretti
Thu, 2015-09-17 12:42
Normal topic how to use backrub in rosetta3.1
by lqzhang » Mon, 2010-01-11 14:43
3
1,641 by smlewis
Mon, 2014-04-21 06:47
Normal topic Quesition about Relax Mode
by crysta11 » Wed, 2009-10-21 09:57
3
1,685 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta dock parallel
by mahajanr » Tue, 2010-06-01 16:04
3
2,326 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to integrate Rosetta code to my program?
by Lsg » Tue, 2011-06-28 07:18
3
2,434 by smlewis
Mon, 2014-04-21 06:47
Normal topic acceptable RMSD value in the clustered structures?
by ritacc18 » Wed, 2013-06-19 14:53
3
5,704 by rmoretti
Mon, 2014-04-21 06:48
Normal topic get_distances command in rosetta 3.5
by pramod » Mon, 2014-01-20 11:31
3
1,661 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Simple FoldTree Question
by gipsonb » Wed, 2012-04-25 18:19
3
1,893 by gipsonb
Mon, 2014-04-21 06:47
Normal topic Comparison between two fragment pickers
by qlj » Mon, 2013-09-02 06:34
3
1,909 by rmoretti
Mon, 2014-04-21 06:48
Normal topic DomainAssembly Mover with constraints (using RosettaScripts)
by resiros » Wed, 2016-09-21 11:19
3
1,690 by rmoretti
Mon, 2016-11-14 14:21
Normal topic Rosetta Dock with MPI / PBS
by edpryor » Wed, 2012-09-05 11:04
3
3,909 by smlewis
Mon, 2014-04-21 06:47
Normal topic When does Rosetta switch from centroid to FA mode?
by MarkW » Fri, 2015-07-03 04:48
3
1,706 by rmoretti
Sun, 2015-07-05 14:28
Normal topic why energy is positive?
by albumns » Tue, 2014-12-23 00:05
3
2,021 by rmoretti
Mon, 2015-02-09 11:21
Normal topic Problem creating pNNMAKE.gnu
by anirbanzz » Sat, 2010-04-17 02:14
3
2,265 by monica0569
Mon, 2014-04-21 06:47
Normal topic what is 05.2009 ideal coordinates
by Lindsay » Tue, 2014-09-23 20:36
3
1,555 by rmoretti
Mon, 2014-09-29 13:45
Normal topic Can I thread a two chained structure in RosettaCM?
by ahmadkhalifa » Mon, 2018-01-08 09:41
3
741 by aaxx
Wed, 2019-11-06 01:44
Normal topic NOE constraints with Rosetta 3.1
by mpiuzzi » Wed, 2010-02-24 02:40
3
1,773 by mpiuzzi
Mon, 2014-04-21 06:47
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