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ROSIE - General

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Sticky topic Sticky: ROSIE FAQ
by Sergey » Mon, 2013-04-08 10:41
6
30,320 by G-Jade
Fri, 2020-12-18 22:40
Normal topic Running ROSIE from terminal
by sc19 » Thu, 2022-07-14 01:09
0
445 by sc19
Thu, 2022-07-14 01:09
Normal topic ROSETTA design affinity optimization
by wentlewi » Mon, 2020-02-03 01:42
0
1,561 by wentlewi
Mon, 2020-02-03 01:42
Normal topic Ways to improve ROSIE docking2 jobs
by AdoCbl » Wed, 2015-09-23 15:12
0
1,765 by AdoCbl
Wed, 2015-09-23 15:12
Normal topic Results are NOT emailed
by alsayeghkn » Wed, 2022-03-23 08:55
0
491 by alsayeghkn
Wed, 2022-03-23 08:55
Normal topic Academic email verification
by Yair Tenorio » Mon, 2023-10-23 12:18
0
298 by Yair Tenorio
Mon, 2023-10-23 12:18
Normal topic Cancel / delete Rosie not working
by fglaser » Tue, 2015-07-07 01:14
0
1,846 by fglaser
Tue, 2015-07-07 01:14
Normal topic Transitioning from ROSIE to Rosetta
by AdoCbl » Wed, 2015-09-23 11:49
0
1,801 by AdoCbl
Wed, 2015-09-23 11:49
Normal topic Symmetric Docking Protocol
by Sergey » Tue, 2013-10-29 17:33
0
5,551 by Sergey
Mon, 2014-04-21 06:48
Normal topic ROSIE pKa calculation issue
by lijum » Mon, 2020-06-15 12:12
0
1,223 by lijum
Mon, 2020-06-15 12:12
Normal topic antibody-antigen interface score
by jessye » Sun, 2018-07-01 21:12
0
1,548 by jessye
Sun, 2018-07-01 21:12
Normal topic Multiple antibody jobs failed
by larae » Mon, 2022-09-12 09:54
0
421 by larae
Mon, 2022-09-12 09:54
Normal topic Sequence Tolerance broken links?
by dnamkr » Fri, 2021-10-22 11:34
0
701 by dnamkr
Fri, 2021-10-22 11:34
Normal topic Rosettadock Error
by jinfeng » Fri, 2022-11-18 20:39
0
692 by jinfeng
Fri, 2022-11-18 20:39
Normal topic account does not have verified academic email address
by haria256 » Sat, 2022-07-02 03:33
0
496 by haria256
Sat, 2022-07-02 03:33
Normal topic Erraser single-residue protocol now open to public
by Sergey » Thu, 2012-10-25 18:21
0
2,184 by Sergey
Mon, 2014-04-21 06:47
Normal topic farfar2 failed
by Kamonwan » Mon, 2023-01-23 18:41
0
390 by Kamonwan
Mon, 2023-01-23 18:41
Normal topic Ways to improve both docking2 and symmetric_docking jobs
by AdoCbl » Wed, 2015-09-23 14:43
0
1,846 by AdoCbl
Wed, 2015-09-23 15:35
Normal topic Ligand Docking Protocol now available for academic users
by Sergey » Sat, 2014-05-10 14:39
0
2,304 by Sergey
Sat, 2014-05-10 14:39
Normal topic Antibody Job Failed
by aquilesms89 » Thu, 2020-08-13 08:50
0
1,406 by aquilesms89
Thu, 2020-08-13 08:50
Normal topic Correctly Formatting a PDB file for analysis of a Zinc Finger Motif
by rslack » Thu, 2022-04-28 18:19
0
517 by rslack
Thu, 2022-04-28 18:38
Normal topic Relax application before ROSIE
by mwinn99 » Wed, 2022-05-25 13:23
0
522 by mwinn99
Wed, 2022-05-25 13:23
Normal topic my status jobs been queued in such longer time
by Atirah » Fri, 2020-04-10 02:55
0
1,501 by Atirah
Fri, 2020-04-10 02:57
Normal topic problem in downloading result from backrub server
by ladimafakher » Sun, 2018-07-01 00:50
0
1,323 by ladimafakher
Sun, 2018-07-01 00:50
Normal topic Ligand Binding
by KS Siddiqui » Thu, 2019-04-25 01:01
0
1,315 by KS Siddiqui
Thu, 2019-04-25 01:01
Normal topic Extracting starting coordinates from ligand docking output
by rgb6@le.ac.uk » Wed, 2023-03-08 02:03
0
478 by rgb6@le.ac.uk
Wed, 2023-03-08 02:03
Normal topic Erraser protocol now open to public
by Sergey » Wed, 2012-10-17 12:38
0
2,220 by Sergey
Mon, 2014-04-21 06:47
Normal topic pKa app is now public!
by Sergey » Mon, 2014-03-10 15:47
0
3,731 by Sergey
Mon, 2014-03-10 15:47
Normal topic getting right protonation state from PKa of Rosie
by hajar » Fri, 2020-07-24 16:24
0
1,124 by hajar
Fri, 2020-07-24 16:24
Normal topic ROSIE ANTIBODY GRAFTING
by izzafajriani » Sat, 2023-02-25 01:28
0
432 by izzafajriani
Sat, 2023-02-25 01:28
Normal topic I have jobs queued for nearly 1 month
by jessye » Thu, 2019-10-10 03:36
0
1,370 by jessye
Thu, 2019-10-10 03:36
Normal topic Problem with ROSIE antibody modeling
by wildchipiron » Thu, 2016-04-14 20:00
0
1,840 by wildchipiron
Thu, 2016-04-14 20:00
Normal topic Verification
by davelansing » Wed, 2023-07-05 12:09
0
196 by davelansing
Wed, 2023-07-05 12:10
Normal topic FARFAR2 - Extra Minimize Hangs on Submittal
by jvogt » Thu, 2022-06-16 09:41
0
512 by jvogt
Thu, 2022-06-16 09:41
Normal topic Questions about SnugDock result analysis
by LTJ » Thu, 2020-07-02 17:41
0
1,276 by LTJ
Thu, 2020-07-02 17:41
Normal topic Rosetta processes crashed
by izzafajriani » Thu, 2023-02-23 15:35
0
438 by izzafajriani
Thu, 2023-02-23 15:35
Normal topic m6A modification on FARFAR2
by uke » Mon, 2023-09-18 04:31
0
352 by uke
Mon, 2023-09-18 04:31
Normal topic Rosetta-Vienna RNP-ddG failed
by Athena Chu » Mon, 2022-04-18 18:21
0
512 by Athena Chu
Mon, 2022-04-18 18:21
Normal topic SNUGDOCK
by adva » Sun, 2017-07-16 00:46
1
2,130 by rmoretti
Mon, 2017-07-17 07:57
Normal topic Academic domains list
by aozalevsky » Tue, 2022-05-24 09:24
1
688 by rmoretti
Wed, 2022-05-25 08:25
Normal topic Beta-Peptide Design Protocol now available for academic users
by Sergey » Wed, 2012-11-28 12:32
1
7,488 by jaw315
Thu, 2022-06-09 10:26
Normal topic SnugDock: chain_id H represents more than one chain
by tweetman » Wed, 2018-05-02 04:24
1
2,563 by sheehajh
Wed, 2018-05-02 06:38
Normal topic Access to GitHub Denied
by Lucia_G » Wed, 2023-01-25 07:13
1
461 by Sergey
Mon, 2023-01-30 12:29
Normal topic Docking two proteins with interfacing ligand
by luisalles » Tue, 2016-04-05 23:56
1
2,712 by rmoretti
Fri, 2016-04-29 09:27
Normal topic academic email
by rhn » Wed, 2022-08-17 12:44
1
592 by Sergey
Thu, 2022-08-18 13:34
Normal topic Snugdock versus Docking with an ensemble of protein conformations
by MIke Kent » Fri, 2019-03-29 10:07
1
1,941 by jeliazkov
Fri, 2019-03-29 10:34
Normal topic farfar2 not submitting jobs
by santos » Thu, 2023-03-02 05:07
1
531 by everyday847
Thu, 2023-03-02 07:51
Normal topic Academic verification
by hkabj77 » Wed, 2023-06-28 00:35
1
259 by Sergey
Thu, 2023-06-29 11:23
Normal topic Rosetta Antibody
by Maryam_tabasinezhad » Sun, 2016-08-28 00:29
1
2,639 by smlewis
Sun, 2016-08-28 12:04
Normal topic Academic adress
by ErikRihtar » Sat, 2022-10-01 08:39
1
564 by Sergey
Mon, 2022-10-03 13:49
Normal topic Rosie vip function fails on multiple tries
by Amy F » Sat, 2019-06-15 12:51
1
1,786 by rmoretti
Mon, 2019-06-24 12:20
Normal topic Error of non standard amino acid (SnugDock)
by bt13d072 » Wed, 2017-03-01 19:51
1
2,709 by rmoretti
Mon, 2017-03-06 09:14
Normal topic Academic Email Address
by cecii_xy » Tue, 2022-11-08 07:31
1
649 by Sergey
Tue, 2022-11-08 12:34
Normal topic Modeling Antibody Structure failed
by Sunyp_IM » Sun, 2017-08-06 02:59
1
2,444 by rmoretti
Mon, 2017-08-14 15:09
Normal topic Is there a limitation of RNA length using farfar2?
by lwb » Wed, 2023-01-04 19:09
1
608 by everyday847
Wed, 2023-01-04 19:20
Normal topic Academic address not verified during rosie login
by pomden31 » Thu, 2022-05-26 10:04
1
668 by Sergey
Thu, 2022-05-26 10:21
Normal topic Academic email
by Morteza Ghandadi » Sun, 2022-07-17 00:36
1
643 by rmoretti
Mon, 2022-07-18 06:59
Normal topic Rosie login email verification
by dominiksIZI » Tue, 2023-02-21 06:10
1
443 by Sergey
Tue, 2023-02-21 09:44
Normal topic "in_progress" decoy files in some docking2 local_docking job tar archives
by AdoCbl » Sun, 2015-10-18 13:47
1
2,787 by rmoretti
Sun, 2015-10-18 13:59
Normal topic error in peptiderive job result
by PRITAM » Wed, 2019-05-08 09:33
1
1,822 by rmoretti
Mon, 2019-06-24 12:30
Normal topic antibody modeling fail
by jessye » Tue, 2019-07-02 01:57
1
1,903 by rmoretti
Wed, 2019-07-10 09:09
Normal topic ROSIE Queue not loading
by ramon-arg » Mon, 2023-07-31 10:09
1
233 by Sergey
Mon, 2023-07-31 11:45
Normal topic Academic address not verified during Rosie login
by schacherl » Fri, 2022-10-07 02:06
1
670 by Sergey
Fri, 2022-10-07 15:28
Normal topic Academic email verification
by rpracella » Wed, 2023-10-25 23:39
1
130 by Sergey
Thu, 2023-10-26 14:27
Normal topic academic institution domain is not listed
by ruma99 » Tue, 2022-05-24 08:33
1
692 by Sergey
Tue, 2022-05-24 10:45
Normal topic Academic verification
by AnaFernandes-CTN » Tue, 2023-05-30 08:57
1
328 by Sergey
Tue, 2023-05-30 11:32
Normal topic chothia numbering error of FR_L1
by Sbrendle » Mon, 2016-08-22 06:58
1
2,411 by nmarze
Mon, 2016-08-22 11:57
Normal topic Support for local install of ROSIE?
by jjv5 » Mon, 2022-03-21 08:58
1
743 by Sergey
Mon, 2022-03-21 12:10
Normal topic Academic email verification
by john2 » Tue, 2023-10-17 11:41
1
161 by Sergey
Tue, 2023-10-17 13:13
Normal topic Docking results
by sujigeorge1979 » Wed, 2019-06-12 23:40
1
1,876 by jeliazkov
Mon, 2019-06-17 06:07
Normal topic RMSD - Score
by LT » Thu, 2017-02-23 12:59
1
2,603 by rmoretti
Thu, 2017-02-23 13:03
Normal topic Cannot confirm registration to the Rosie site
by fglaser » Sun, 2013-10-13 02:52
1
9,662 by Sergey
Mon, 2014-04-21 06:48
Normal topic RMSD values for symmetric_docking clockwise vs counterclockwise cyclical outputs
by AdoCbl » Sun, 2015-10-18 12:49
1
2,731 by IAndre
Mon, 2015-10-19 01:19
Normal topic Problem in refinement job in Docking2
by aninditaseal » Fri, 2016-04-22 07:12
1
2,456 by Sergey
Fri, 2016-04-22 11:13
Normal topic Academic Email
by Teo » Tue, 2022-09-06 08:42
1
742 by Sergey
Tue, 2022-09-06 11:10
Normal topic farfar2 error
by debostuti » Thu, 2021-10-07 23:10
1
1,051 by everyday847
Fri, 2021-10-08 10:29
Normal topic Academic email address verification
by whu » Thu, 2023-07-06 09:29
1
282 by Sergey
Fri, 2023-07-07 10:41
Normal topic Academic address not verified during Rosie login
by Jean-Etienne » Thu, 2022-10-06 22:49
1
585 by Sergey
Fri, 2022-10-07 15:26
Normal topic RMSD
by jessye » Tue, 2019-07-02 01:54
1
2,437 by rmoretti
Tue, 2019-07-09 09:49
Normal topic Academic domain not listed
by SKlab » Fri, 2022-05-20 12:03
1
672 by Sergey
Fri, 2022-05-20 12:14
Normal topic Antibody scoring
by larae » Wed, 2022-06-22 11:14
1
663 by rmoretti
Wed, 2022-06-22 12:00
Normal topic Compaing interface socre of different ligands with the same protein structure
by Caulobacter » Tue, 2019-12-10 12:53
1
1,739 by rmoretti
Tue, 2019-12-10 13:10
Normal topic Comparing Protein-Protein Docking interactions between WT and mutant proteins
by dflaher » Fri, 2017-11-03 06:18
1
2,414 by rmoretti
Fri, 2017-12-01 11:21
Normal topic GitHub authentication for Rosie
by ivmolle » Thu, 2023-01-19 00:21
1
456 by Sergey
Thu, 2023-01-19 13:33
Normal topic Academic email
by ruuua » Wed, 2022-08-03 01:45
1
710 by Sergey
Thu, 2022-08-04 15:58
Normal topic academic verification
by Rita Melo » Fri, 2023-05-26 07:36
1
318 by Sergey
Tue, 2023-05-30 11:31
Normal topic download decoy structures as .tar file?
by deplazes » Fri, 2014-11-21 19:25
1
3,416 by Ashafix
Sat, 2014-11-29 07:00
Normal topic Log in to rosie
by dnamkr » Tue, 2022-03-15 11:04
1
831 by Sergey
Tue, 2022-03-15 11:28
Normal topic Academic email verification
by victor-calatayud » Mon, 2023-09-18 10:43
1
205 by Sergey
Tue, 2023-09-19 13:34
Normal topic Academic email verification
by edgararg » Fri, 2023-11-10 11:03
1
84 by Sergey
Fri, 2023-11-10 11:22
Normal topic Verification via github
by Mirosh » Wed, 2023-08-30 21:15
1
201 by rmoretti
Thu, 2023-08-31 08:50
Normal topic free Energy Calculation?
by Sduenas » Thu, 2015-06-25 12:18
1
4,014 by rmoretti
Fri, 2015-07-03 11:56
Normal topic Rosie Docking Server-Energy function
by jsv » Fri, 2017-07-21 08:26
1
2,235 by ssrb
Fri, 2017-07-21 09:29
Normal topic Academic domain not listed
by benjv » Wed, 2022-05-25 10:31
1
689 by Sergey
Thu, 2022-05-26 10:23
Normal topic Protein protein docking
by drrahulsuresh » Wed, 2018-05-02 12:52
1
2,309 by smlewis
Thu, 2018-05-03 11:45
Normal topic Login using GitHub
by nicotomasini » Mon, 2023-01-30 09:14
1
520 by Sergey
Mon, 2023-01-30 12:32
Normal topic Failure in local docking
by Fei » Thu, 2014-06-26 12:24
1
3,136 by rmoretti
Tue, 2014-07-01 09:44
Normal topic Bound Ligand Protein-Protein Docking
by ajaniharesh » Mon, 2019-04-08 12:18
1
1,789 by rmoretti
Thu, 2019-05-09 13:38
Normal topic Small molecule ligand docking in RosettaDock-4.0
by hicks139 » Thu, 2023-03-02 09:35
1
590 by rmoretti
Thu, 2023-03-02 09:37
Normal topic Academic E-mail address
by Valery Veresov » Wed, 2022-10-05 05:43
1
581 by rmoretti
Thu, 2022-10-06 09:18
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