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ROSIE FAQ by Sergey » Mon, 2013-04-08 10:41 |
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24,722 |
by beslínail@gmail.com Tue, 2020-02-18 08:12 |
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Ways to improve ROSIE docking2 jobs by AdoCbl » Wed, 2015-09-23 15:12 |
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1,068 |
by AdoCbl Wed, 2015-09-23 15:12 |
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Beta-Peptide Design Protocol now available for academic users by Sergey » Wed, 2012-11-28 12:32 |
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4,565 |
by Sergey Mon, 2014-04-21 06:47 |
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my status jobs been queued in such longer time by Atirah » Fri, 2020-04-10 02:55 |
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459 |
by Atirah Fri, 2020-04-10 02:57 |
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Cancel / delete Rosie not working by fglaser » Tue, 2015-07-07 01:14 |
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1,103 |
by fglaser Tue, 2015-07-07 01:14 |
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Transitioning from ROSIE to Rosetta by AdoCbl » Wed, 2015-09-23 11:49 |
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1,051 |
by AdoCbl Wed, 2015-09-23 11:49 |
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antibody-antigen interface score by jessye » Sun, 2018-07-01 21:12 |
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678 |
by jessye Sun, 2018-07-01 21:12 |
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Symmetric Docking Protocol by Sergey » Tue, 2013-10-29 17:33 |
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4,866 |
by Sergey Mon, 2014-04-21 06:48 |
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getting right protonation state from PKa of Rosie by hajar » Fri, 2020-07-24 16:24 |
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111 |
by hajar Fri, 2020-07-24 16:24 |
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Ways to improve both docking2 and symmetric_docking jobs by AdoCbl » Wed, 2015-09-23 14:43 |
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1,086 |
by AdoCbl Wed, 2015-09-23 15:35 |
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Erraser single-residue protocol now open to public by Sergey » Thu, 2012-10-25 18:21 |
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1,525 |
by Sergey Mon, 2014-04-21 06:47 |
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Ligand Docking Protocol now available for academic users by Sergey » Sat, 2014-05-10 14:39 |
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1,573 |
by Sergey Sat, 2014-05-10 14:39 |
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problem in downloading result from backrub server by ladimafakher » Sun, 2018-07-01 00:50 |
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487 |
by ladimafakher Sun, 2018-07-01 00:50 |
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Questions about SnugDock result analysis by LTJ » Thu, 2020-07-02 17:41 |
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224 |
by LTJ Thu, 2020-07-02 17:41 |
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Ligand Binding by KS Siddiqui » Thu, 2019-04-25 01:01 |
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419 |
by KS Siddiqui Thu, 2019-04-25 01:01 |
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Erraser protocol now open to public by Sergey » Wed, 2012-10-17 12:38 |
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1,520 |
by Sergey Mon, 2014-04-21 06:47 |
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ROSETTA design affinity optimization by wentlewi » Mon, 2020-02-03 01:42 |
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359 |
by wentlewi Mon, 2020-02-03 01:42 |
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pKa app is now public! by Sergey » Mon, 2014-03-10 15:47 |
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3,009 |
by Sergey Mon, 2014-03-10 15:47 |
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I have jobs queued for nearly 1 month by jessye » Thu, 2019-10-10 03:36 |
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407 |
by jessye Thu, 2019-10-10 03:36 |
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ROSIE pKa calculation issue by lijum » Mon, 2020-06-15 12:12 |
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200 |
by lijum Mon, 2020-06-15 12:12 |
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Problem with ROSIE antibody modeling by wildchipiron » Thu, 2016-04-14 20:00 |
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1,077 |
by wildchipiron Thu, 2016-04-14 20:00 |
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Antibody Job Failed by aquilesms89 » Thu, 2020-08-13 08:50 |
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141 |
by aquilesms89 Thu, 2020-08-13 08:50 |
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SNUGDOCK by adva » Sun, 2017-07-16 00:46 |
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954 |
by rmoretti Mon, 2017-07-17 07:57 |
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SnugDock: chain_id H represents more than one chain by tweetman » Wed, 2018-05-02 04:24 |
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866 |
by sheehajh Wed, 2018-05-02 06:38 |
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Snugdock versus Docking with an ensemble of protein conformations by MIke Kent » Fri, 2019-03-29 10:07 |
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568 |
by jeliazkov Fri, 2019-03-29 10:34 |
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Docking two proteins with interfacing ligand by luisalles » Tue, 2016-04-05 23:56 |
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1,523 |
by rmoretti Fri, 2016-04-29 09:27 |
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Rosie vip function fails on multiple tries by Amy F » Sat, 2019-06-15 12:51 |
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445 |
by rmoretti Mon, 2019-06-24 12:20 |
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Rosetta Antibody by Maryam_tabasinezhad » Sun, 2016-08-28 00:29 |
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1,416 |
by smlewis Sun, 2016-08-28 12:04 |
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Error of non standard amino acid (SnugDock) by bt13d072 » Wed, 2017-03-01 19:51 |
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1,373 |
by rmoretti Mon, 2017-03-06 09:14 |
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Modeling Antibody Structure failed by Sunyp_IM » Sun, 2017-08-06 02:59 |
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1,118 |
by rmoretti Mon, 2017-08-14 15:09 |
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Compaing interface socre of different ligands with the same protein structure by Caulobacter » Tue, 2019-12-10 12:53 |
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423 |
by rmoretti Tue, 2019-12-10 13:10 |
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"in_progress" decoy files in some docking2 local_docking job tar archives by AdoCbl » Sun, 2015-10-18 13:47 |
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1,586 |
by rmoretti Sun, 2015-10-18 13:59 |
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error in peptiderive job result by PRITAM » Wed, 2019-05-08 09:33 |
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466 |
by rmoretti Mon, 2019-06-24 12:30 |
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antibody modeling fail by jessye » Tue, 2019-07-02 01:57 |
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488 |
by rmoretti Wed, 2019-07-10 09:09 |
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Docking results by sujigeorge1979 » Wed, 2019-06-12 23:40 |
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526 |
by jeliazkov Mon, 2019-06-17 06:07 |
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chothia numbering error of FR_L1 by Sbrendle » Mon, 2016-08-22 06:58 |
1 |
1,265 |
by nmarze Mon, 2016-08-22 11:57 |
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RMSD - Score by LT » Thu, 2017-02-23 12:59 |
1 |
1,292 |
by rmoretti Thu, 2017-02-23 13:03 |
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RMSD values for symmetric_docking clockwise vs counterclockwise cyclical outputs by AdoCbl » Sun, 2015-10-18 12:49 |
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1,613 |
by IAndre Mon, 2015-10-19 01:19 |
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Cannot confirm registration to the Rosie site by fglaser » Sun, 2013-10-13 02:52 |
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8,519 |
by Sergey Mon, 2014-04-21 06:48 |
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Problem in refinement job in Docking2 by aninditaseal » Fri, 2016-04-22 07:12 |
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1,291 |
by Sergey Fri, 2016-04-22 11:13 |
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RMSD by jessye » Tue, 2019-07-02 01:54 |
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451 |
by rmoretti Tue, 2019-07-09 09:49 |
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Comparing Protein-Protein Docking interactions between WT and mutant proteins by dflaher » Fri, 2017-11-03 06:18 |
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1,076 |
by rmoretti Fri, 2017-12-01 11:21 |
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download decoy structures as .tar file? by deplazes » Fri, 2014-11-21 19:25 |
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2,212 |
by Ashafix Sat, 2014-11-29 07:00 |
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free Energy Calculation? by Sduenas » Thu, 2015-06-25 12:18 |
1 |
2,158 |
by rmoretti Fri, 2015-07-03 11:56 |
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Rosie Docking Server-Energy function by jsv » Fri, 2017-07-21 08:26 |
1 |
1,027 |
by ssrb Fri, 2017-07-21 09:29 |
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Protein protein docking by drrahulsuresh » Wed, 2018-05-02 12:52 |
1 |
912 |
by smlewis Thu, 2018-05-03 11:45 |
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Bound Ligand Protein-Protein Docking by ajaniharesh » Mon, 2019-04-08 12:18 |
1 |
491 |
by rmoretti Thu, 2019-05-09 13:38 |
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Failure in local docking by Fei » Thu, 2014-06-26 12:24 |
1 |
2,004 |
by rmoretti Tue, 2014-07-01 09:44 |
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Nanobody prediction using ROSIE ? by esozdemir » Thu, 2019-06-20 11:14 |
1 |
485 |
by rmoretti Mon, 2019-06-24 12:02 |
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Rosie server stuck?? by David Weis » Sun, 2017-03-05 13:37 |
1 |
1,167 |
by smlewis Mon, 2017-03-06 08:58 |
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Deleting ones "own" guest job a to reduce server load by Protein fan » Thu, 2017-10-26 01:26 |
1 |
1,088 |
by rmoretti Fri, 2017-12-01 11:24 |
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Let docking2 jobs list the scores for the input proteins.pdb file by AdoCbl » Wed, 2015-09-23 12:24 |
1 |
1,569 |
by AdoCbl Thu, 2015-09-24 11:38 |
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SNUGDOCK by harsh » Tue, 2018-10-09 23:58 |
1 |
752 |
by Sergey Tue, 2018-10-16 15:52 |
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ROSIE antibody modeling- discontinuity in backbone by wagnerek » Tue, 2015-10-27 10:18 |
1 |
1,590 |
by rmoretti Wed, 2015-11-25 12:53 |
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SnugDocking result interpretation by jessye » Mon, 2019-05-27 03:43 |
1 |
507 |
by jeliazkov Tue, 2019-05-28 13:36 |
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missing residues while Rosie Modeling by jguan » Mon, 2014-08-11 06:56 |
1 |
3,149 |
by jadolfbr Tue, 2014-10-21 08:46 |
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Prepack step fail in docking2 by gretahultqvist » Thu, 2015-06-11 00:20 |
1 |
2,001 |
by rmoretti Fri, 2015-07-03 12:14 |
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FARFAR2 structure prediction give a circular RNA by jitz » Thu, 2019-07-25 04:58 |
1 |
587 |
by everyday847 Mon, 2019-11-11 14:39 |
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Error 500 Docking protein by Sherpaman » Tue, 2014-05-27 01:32 |
2 |
2,540 |
by Sergey Wed, 2014-05-28 13:16 |
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Docking2: Mismatch between score file and graph by Ashafix » Sat, 2014-11-29 07:44 |
2 |
2,485 |
by AdoCbl Sun, 2015-08-09 14:37 |
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CDR are not being recognized by wildchipiron » Mon, 2016-05-23 15:03 |
2 |
1,937 |
by nmarze Wed, 2016-05-25 14:54 |
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Output format by Michele Tavanti » Sat, 2015-04-25 05:03 |
2 |
2,175 |
by Conan Sat, 2015-04-25 11:31 |
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proteins.pdb: Not enough chains in submitted protein! [At least 2 chains should be present, found chains: [u'A']...] by Loki01 » Mon, 2018-03-19 13:34 |
2 |
1,187 |
by Loki01 Mon, 2018-03-19 13:45 |
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FARFAR2 error by lijunnju » Tue, 2020-02-11 08:09 |
2 |
628 |
by Lipgloss Mon, 2020-04-20 01:56 |
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Does Snugdock remodeling of H3 loops include the kink constraint as in RosettaAntibody? by MIke Kent » Wed, 2019-03-27 10:09 |
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713 |
by MIke Kent Thu, 2019-03-28 11:26 |
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Problems with the RNA Denovo server by mariaclausen » Tue, 2014-11-25 01:45 |
2 |
2,446 |
by mariaclausen Thu, 2014-11-27 01:30 |
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Linear peptide versus cyclic peptide binding prediction by gabr » Mon, 2019-11-18 12:25 |
2 |
621 |
by gabr Tue, 2019-11-19 13:57 |
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Supercharge server by alva » Wed, 2014-07-02 17:36 |
2 |
2,660 |
by hooria Mon, 2016-06-13 11:08 |
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How to change your ROSIE username or password? by AdoCbl » Sun, 2015-08-09 00:08 |
2 |
2,365 |
by AdoCbl Tue, 2015-08-18 19:09 |
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Docking-Error 500 by edebenedictis » Wed, 2016-08-03 12:34 |
2 |
1,810 |
by Sergey Wed, 2016-08-03 14:21 |
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How to improve ROSIE docking2 results? by AdoCbl » Sun, 2015-08-09 01:22 |
2 |
2,422 |
by AdoCbl Tue, 2015-08-18 19:19 |
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Fnat=NaN in a docking2 job by AdoCbl » Sun, 2015-10-18 12:19 |
2 |
2,280 |
by AdoCbl Sun, 2015-10-18 15:52 |
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pKa job submitting problem by syoifczeri » Tue, 2015-02-17 21:41 |
2 |
2,341 |
by syoifczeri Wed, 2015-02-18 19:15 |
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Antibody Server is down by Jogi » Thu, 2012-06-21 04:50 |
2 |
3,848 |
by Sergey Mon, 2014-04-21 06:47 |
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Symmetric Docking Jobs not running by Flaviyan » Wed, 2014-02-05 06:41 |
2 |
4,528 |
by AdoCbl Sat, 2015-08-08 22:38 |
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supercharge problems by hooria » Tue, 2016-06-14 05:29 |
2 |
1,925 |
by smlewis Wed, 2016-06-15 07:50 |
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problems with docking by msironi » Thu, 2016-10-27 00:46 |
3 |
2,227 |
by Sergey Mon, 2016-11-21 11:03 |
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Fv modelling Job Mab_Top 「№33253」 by pr.henriques » Wed, 2017-07-12 03:13 |
3 |
1,697 |
by rmoretti Thu, 2017-07-13 15:19 |
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Job 「№15623」has failed by fglaser » Tue, 2015-07-07 00:17 |
3 |
3,330 |
by rmoretti Tue, 2015-07-14 14:35 |
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Can you change background color of pdb file pictures? by AdoCbl » Sun, 2015-08-09 01:47 |
3 |
2,969 |
by AdoCbl Tue, 2015-08-18 19:17 |
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peptiderive problem by Fatemeh Arabi » Fri, 2016-10-14 02:54 |
3 |
2,158 |
by Sergey Mon, 2016-11-14 14:48 |
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Numbering failed by Sbrendle » Mon, 2017-06-05 08:07 |
3 |
1,866 |
by rmoretti Thu, 2017-06-29 07:58 |
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How to run PLOT LHOC on Results from Rosie Server by sujigeorge1979 » Mon, 2019-06-10 19:32 |
3 |
766 |
by jeliazkov Mon, 2019-06-24 11:49 |
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docking2: will the real prepacked PDB stand up? by David Weis » Tue, 2017-02-21 10:04 |
3 |
1,848 |
by rmoretti Tue, 2017-02-28 08:34 |
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docking2: local_docking vs docking_local_refine by AdoCbl » Sat, 2015-08-08 23:57 |
3 |
3,114 |
by AdoCbl Wed, 2015-08-26 19:44 |
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RMSD values in docking2 and symmetric_docking runs by AdoCbl » Sun, 2015-08-09 00:48 |
4 |
4,221 |
by rmoretti Fri, 2015-09-04 13:57 |
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Antibody prediction with ROSIE failed by Sunyp_IM » Wed, 2017-08-02 23:45 |
4 |
1,676 |
by Sergey Thu, 2019-05-09 08:15 |
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Ways to improve ROSIE symmetric_docking jobs by AdoCbl » Wed, 2015-09-23 13:39 |
4 |
3,653 |
by IAndre Tue, 2015-09-29 08:10 |
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docking2 results seem to not have contacting residues by wagnerek » Tue, 2015-10-27 10:30 |
4 |
3,415 |
by AdoCbl Sun, 2015-11-15 08:10 |
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A table of residue-residue pair energies for residues which interact across the docking interface missing in output by awaring » Mon, 2013-04-22 14:47 |
4 |
7,050 |
by smlewis Mon, 2014-04-21 06:47 |
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Ligand docking error Could not find essential file trigger-00001.ligand_docking_protocol by iphan » Mon, 2016-09-12 10:58 |
4 |
3,235 |
by rmoretti Mon, 2016-10-03 10:44 |
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Snugdock by MIke Kent » Mon, 2019-12-16 22:10 |
4 |
834 |
by MIke Kent Tue, 2019-12-24 08:02 |
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LIGAND APPEARS TO BE DOCKED INTO EMPTY SPACE by gabeliluo1 » Wed, 2016-01-06 16:23 |
5 |
4,043 |
by rmoretti Thu, 2016-02-04 07:39 |
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how can i refine protein loop region contain nonstandard amino acid morespecifically Phosphoserine and phosphothreonine by jai_INMAS » Thu, 2014-08-07 01:49 |
6 |
6,969 |
by jai_INMAS Fri, 2014-08-15 08:02 |
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Rosie Server Docking2, wrong plots output? by Conan » Tue, 2015-04-21 12:18 |
6 |
5,210 |
by AdoCbl Sun, 2015-08-09 14:38 |
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Sequence Tolerance Failed by Dstork » Tue, 2017-01-03 07:13 |
6 |
3,190 |
by Sergey Mon, 2017-01-09 16:37 |
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Regarding snugdock Ag-Ab score by ss » Mon, 2018-12-10 14:47 |
7 |
1,971 |
by ss Thu, 2019-01-03 09:08 |
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Score and I_sc in ROSIE symmetric_docking output by AdoCbl » Sun, 2015-08-09 00:26 |
11 |
8,072 |
by rmoretti Tue, 2015-11-24 16:33 |
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