You are here
ROSIE - General
Log in to post new content in the forum.
| Topic / Topic starter |
Replies |
Views | Last post | |
|---|---|---|---|---|
|
Sticky:
ROSIE FAQ by Sergey » Mon, 2013-04-08 10:41 |
3 |
22,820 |
by rmoretti Mon, 2018-03-19 12:22 |
|
|
pKa app is now public! by Sergey » Mon, 2014-03-10 15:47 |
0 |
2,593 |
by Sergey Mon, 2014-03-10 15:47 |
|
|
Problem with ROSIE antibody modeling by wildchipiron » Thu, 2016-04-14 20:00 |
0 |
643 |
by wildchipiron Thu, 2016-04-14 20:00 |
|
|
Ways to improve ROSIE docking2 jobs by AdoCbl » Wed, 2015-09-23 15:12 |
0 |
623 |
by AdoCbl Wed, 2015-09-23 15:12 |
|
|
Beta-Peptide Design Protocol now available for academic users by Sergey » Wed, 2012-11-28 12:32 |
0 |
2,197 |
by Sergey Mon, 2014-04-21 06:47 |
|
|
Cancel / delete Rosie not working by fglaser » Tue, 2015-07-07 01:14 |
0 |
704 |
by fglaser Tue, 2015-07-07 01:14 |
|
|
Transitioning from ROSIE to Rosetta by AdoCbl » Wed, 2015-09-23 11:49 |
0 |
649 |
by AdoCbl Wed, 2015-09-23 11:49 |
|
|
Symmetric Docking Protocol by Sergey » Tue, 2013-10-29 17:33 |
0 |
4,460 |
by Sergey Mon, 2014-04-21 06:48 |
|
|
antibody-antigen interface score by jessye » Sun, 2018-07-01 21:12 |
0 |
53 |
by jessye Sun, 2018-07-01 21:12 |
|
|
Ways to improve both docking2 and symmetric_docking jobs by AdoCbl » Wed, 2015-09-23 14:43 |
0 |
656 |
by AdoCbl Wed, 2015-09-23 15:35 |
|
|
Erraser single-residue protocol now open to public by Sergey » Thu, 2012-10-25 18:21 |
0 |
1,136 |
by Sergey Mon, 2014-04-21 06:47 |
|
|
Ligand Docking Protocol now available for academic users by Sergey » Sat, 2014-05-10 14:39 |
0 |
1,165 |
by Sergey Sat, 2014-05-10 14:39 |
|
|
problem in downloading result from backrub server by ladimafakher » Sun, 2018-07-01 00:50 |
0 |
37 |
by ladimafakher Sun, 2018-07-01 00:50 |
|
|
Erraser protocol now open to public by Sergey » Wed, 2012-10-17 12:38 |
0 |
1,141 |
by Sergey Mon, 2014-04-21 06:47 |
|
|
download decoy structures as .tar file? by deplazes » Fri, 2014-11-21 19:25 |
1 |
1,574 |
by Ashafix Sat, 2014-11-29 07:00 |
|
|
free Energy Calculation? by Sduenas » Thu, 2015-06-25 12:18 |
1 |
1,263 |
by rmoretti Fri, 2015-07-03 11:56 |
|
|
Rosie Docking Server-Energy function by jsv » Fri, 2017-07-21 08:26 |
1 |
400 |
by ssrb Fri, 2017-07-21 09:29 |
|
|
Protein protein docking by drrahulsuresh » Wed, 2018-05-02 12:52 |
1 |
125 |
by smlewis Thu, 2018-05-03 11:45 |
|
|
Failure in local docking by Fei » Thu, 2014-06-26 12:24 |
1 |
1,331 |
by rmoretti Tue, 2014-07-01 09:44 |
|
|
Rosie server stuck?? by David Weis » Sun, 2017-03-05 13:37 |
1 |
513 |
by smlewis Mon, 2017-03-06 08:58 |
|
|
Deleting ones "own" guest job a to reduce server load by Protein fan » Thu, 2017-10-26 01:26 |
1 |
369 |
by rmoretti Fri, 2017-12-01 11:24 |
|
|
Let docking2 jobs list the scores for the input proteins.pdb file by AdoCbl » Wed, 2015-09-23 12:24 |
1 |
993 |
by AdoCbl Thu, 2015-09-24 11:38 |
|
|
ROSIE antibody modeling- discontinuity in backbone by wagnerek » Tue, 2015-10-27 10:18 |
1 |
987 |
by rmoretti Wed, 2015-11-25 12:53 |
|
|
missing residues while Rosie Modeling by jguan » Mon, 2014-08-11 06:56 |
1 |
2,538 |
by jadolfbr Tue, 2014-10-21 08:46 |
|
|
Prepack step fail in docking2 by gretahultqvist » Thu, 2015-06-11 00:20 |
1 |
1,288 |
by rmoretti Fri, 2015-07-03 12:14 |
|
|
SNUGDOCK by adva » Sun, 2017-07-16 00:46 |
1 |
376 |
by rmoretti Mon, 2017-07-17 07:57 |
|
|
SnugDock: chain_id H represents more than one chain by tweetman » Wed, 2018-05-02 04:24 |
1 |
95 |
by sheehajh Wed, 2018-05-02 06:38 |
|
|
Docking two proteins with interfacing ligand by luisalles » Tue, 2016-04-05 23:56 |
1 |
856 |
by rmoretti Fri, 2016-04-29 09:27 |
|
|
Rosetta Antibody by Maryam_tabasinezhad » Sun, 2016-08-28 00:29 |
1 |
768 |
by smlewis Sun, 2016-08-28 12:04 |
|
|
Error of non standard amino acid (SnugDock) by bt13d072 » Wed, 2017-03-01 19:51 |
1 |
632 |
by rmoretti Mon, 2017-03-06 09:14 |
|
|
Modeling Antibody Structure failed by Sunyp_IM » Sun, 2017-08-06 02:59 |
1 |
430 |
by rmoretti Mon, 2017-08-14 15:09 |
|
|
"in_progress" decoy files in some docking2 local_docking job tar archives by AdoCbl » Sun, 2015-10-18 13:47 |
1 |
857 |
by rmoretti Sun, 2015-10-18 13:59 |
|
|
chothia numbering error of FR_L1 by Sbrendle » Mon, 2016-08-22 06:58 |
1 |
645 |
by nmarze Mon, 2016-08-22 11:57 |
|
|
RMSD - Score by LT » Thu, 2017-02-23 12:59 |
1 |
543 |
by rmoretti Thu, 2017-02-23 13:03 |
|
|
Cannot confirm registration to the Rosie site by fglaser » Sun, 2013-10-13 02:52 |
1 |
7,872 |
by Sergey Mon, 2014-04-21 06:48 |
|
|
RMSD values for symmetric_docking clockwise vs counterclockwise cyclical outputs by AdoCbl » Sun, 2015-10-18 12:49 |
1 |
967 |
by IAndre Mon, 2015-10-19 01:19 |
|
|
Problem in refinement job in Docking2 by aninditaseal » Fri, 2016-04-22 07:12 |
1 |
672 |
by Sergey Fri, 2016-04-22 11:13 |
|
|
Comparing Protein-Protein Docking interactions between WT and mutant proteins by dflaher » Fri, 2017-11-03 06:18 |
1 |
302 |
by rmoretti Fri, 2017-12-01 11:21 |
|
|
Docking-Error 500 by edebenedictis » Wed, 2016-08-03 12:34 |
2 |
910 |
by Sergey Wed, 2016-08-03 14:21 |
|
|
How to improve ROSIE docking2 results? by AdoCbl » Sun, 2015-08-09 01:22 |
2 |
1,535 |
by AdoCbl Tue, 2015-08-18 19:19 |
|
|
Fnat=NaN in a docking2 job by AdoCbl » Sun, 2015-10-18 12:19 |
2 |
1,309 |
by AdoCbl Sun, 2015-10-18 15:52 |
|
|
pKa job submitting problem by syoifczeri » Tue, 2015-02-17 21:41 |
2 |
1,490 |
by syoifczeri Wed, 2015-02-18 19:15 |
|
|
Antibody Server is down by Jogi » Thu, 2012-06-21 04:50 |
2 |
3,037 |
by Sergey Mon, 2014-04-21 06:47 |
|
|
Symmetric Docking Jobs not running by Flaviyan » Wed, 2014-02-05 06:41 |
2 |
3,694 |
by AdoCbl Sat, 2015-08-08 22:38 |
|
|
supercharge problems by hooria » Tue, 2016-06-14 05:29 |
2 |
1,094 |
by smlewis Wed, 2016-06-15 07:50 |
|
|
Error 500 Docking protein by Sherpaman » Tue, 2014-05-27 01:32 |
2 |
1,762 |
by Sergey Wed, 2014-05-28 13:16 |
|
|
Docking2: Mismatch between score file and graph by Ashafix » Sat, 2014-11-29 07:44 |
2 |
1,665 |
by AdoCbl Sun, 2015-08-09 14:37 |
|
|
CDR are not being recognized by wildchipiron » Mon, 2016-05-23 15:03 |
2 |
1,124 |
by nmarze Wed, 2016-05-25 14:54 |
|
|
Output format by Michele Tavanti » Sat, 2015-04-25 05:03 |
2 |
1,400 |
by Conan Sat, 2015-04-25 11:31 |
|
|
proteins.pdb: Not enough chains in submitted protein! [At least 2 chains should be present, found chains: [u'A']...] by Loki01 » Mon, 2018-03-19 13:34 |
2 |
211 |
by Loki01 Mon, 2018-03-19 13:45 |
|
|
Problems with the RNA Denovo server by mariaclausen » Tue, 2014-11-25 01:45 |
2 |
1,641 |
by mariaclausen Thu, 2014-11-27 01:30 |
|
|
Antibody prediction with ROSIE failed by Sunyp_IM » Wed, 2017-08-02 23:45 |
2 |
475 |
by Sunyp_IM Thu, 2017-08-03 19:16 |
|
|
Supercharge server by alva » Wed, 2014-07-02 17:36 |
2 |
1,783 |
by hooria Mon, 2016-06-13 11:08 |
|
|
How to change your ROSIE username or password? by AdoCbl » Sun, 2015-08-09 00:08 |
2 |
1,461 |
by AdoCbl Tue, 2015-08-18 19:09 |
|
|
docking2: will the real prepacked PDB stand up? by David Weis » Tue, 2017-02-21 10:04 |
3 |
831 |
by rmoretti Tue, 2017-02-28 08:34 |
|
|
docking2: local_docking vs docking_local_refine by AdoCbl » Sat, 2015-08-08 23:57 |
3 |
1,951 |
by AdoCbl Wed, 2015-08-26 19:44 |
|
|
problems with docking by msironi » Thu, 2016-10-27 00:46 |
3 |
1,081 |
by Sergey Mon, 2016-11-21 11:03 |
|
|
Fv modelling Job Mab_Top 「№33253」 by pr.henriques » Wed, 2017-07-12 03:13 |
3 |
588 |
by rmoretti Thu, 2017-07-13 15:19 |
|
|
Job 「№15623」has failed by fglaser » Tue, 2015-07-07 00:17 |
3 |
2,210 |
by rmoretti Tue, 2015-07-14 14:35 |
|
|
Can you change background color of pdb file pictures? by AdoCbl » Sun, 2015-08-09 01:47 |
3 |
1,959 |
by AdoCbl Tue, 2015-08-18 19:17 |
|
|
peptiderive problem by Fatemeh Arabi » Fri, 2016-10-14 02:54 |
3 |
1,069 |
by Sergey Mon, 2016-11-14 14:48 |
|
|
Numbering failed by Sbrendle » Mon, 2017-06-05 08:07 |
3 |
675 |
by rmoretti Thu, 2017-06-29 07:58 |
|
|
docking2 results seem to not have contacting residues by wagnerek » Tue, 2015-10-27 10:30 |
4 |
2,110 |
by AdoCbl Sun, 2015-11-15 08:10 |
|
|
A table of residue-residue pair energies for residues which interact across the docking interface missing in output by awaring » Mon, 2013-04-22 14:47 |
4 |
5,762 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Ligand docking error Could not find essential file trigger-00001.ligand_docking_protocol by iphan » Mon, 2016-09-12 10:58 |
4 |
1,700 |
by rmoretti Mon, 2016-10-03 10:44 |
|
|
RMSD values in docking2 and symmetric_docking runs by AdoCbl » Sun, 2015-08-09 00:48 |
4 |
2,594 |
by rmoretti Fri, 2015-09-04 13:57 |
|
|
Ways to improve ROSIE symmetric_docking jobs by AdoCbl » Wed, 2015-09-23 13:39 |
4 |
2,309 |
by IAndre Tue, 2015-09-29 08:10 |
|
|
LIGAND APPEARS TO BE DOCKED INTO EMPTY SPACE by gabeliluo1 » Wed, 2016-01-06 16:23 |
5 |
2,413 |
by rmoretti Thu, 2016-02-04 07:39 |
|
|
Sequence Tolerance Failed by Dstork » Tue, 2017-01-03 07:13 |
6 |
1,599 |
by Sergey Mon, 2017-01-09 16:37 |
|
|
how can i refine protein loop region contain nonstandard amino acid morespecifically Phosphoserine and phosphothreonine by jai_INMAS » Thu, 2014-08-07 01:49 |
6 |
4,799 |
by jai_INMAS Fri, 2014-08-15 08:02 |
|
|
Rosie Server Docking2, wrong plots output? by Conan » Tue, 2015-04-21 12:18 |
6 |
3,268 |
by AdoCbl Sun, 2015-08-09 14:38 |
|
|
Score and I_sc in ROSIE symmetric_docking output by AdoCbl » Sun, 2015-08-09 00:26 |
11 |
5,155 |
by rmoretti Tue, 2015-11-24 16:33 |
Log in to post new content in the forum.
