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ROSIE - General

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Sticky topic Sticky: ROSIE FAQ
by Sergey » Mon, 2013-04-08 10:41
6
28,291 by G-Jade
Fri, 2020-12-18 22:40
Normal topic Symmetric Docking Protocol
by Sergey » Tue, 2013-10-29 17:33
0
5,336 by Sergey
Mon, 2014-04-21 06:48
Normal topic getting right protonation state from PKa of Rosie
by hajar » Fri, 2020-07-24 16:24
0
808 by hajar
Fri, 2020-07-24 16:24
Normal topic antibody-antigen interface score
by jessye » Sun, 2018-07-01 21:12
0
1,273 by jessye
Sun, 2018-07-01 21:12
Normal topic Ways to improve both docking2 and symmetric_docking jobs
by AdoCbl » Wed, 2015-09-23 14:43
0
1,618 by AdoCbl
Wed, 2015-09-23 15:35
Normal topic Erraser single-residue protocol now open to public
by Sergey » Thu, 2012-10-25 18:21
0
1,979 by Sergey
Mon, 2014-04-21 06:47
Normal topic Ligand Docking Protocol now available for academic users
by Sergey » Sat, 2014-05-10 14:39
0
2,095 by Sergey
Sat, 2014-05-10 14:39
Normal topic FARFAR2 - Extra Minimize Hangs on Submittal
by jvogt » Thu, 2022-06-16 09:41
0
199 by jvogt
Thu, 2022-06-16 09:41
Normal topic Questions about SnugDock result analysis
by LTJ » Thu, 2020-07-02 17:41
0
938 by LTJ
Thu, 2020-07-02 17:41
Normal topic problem in downloading result from backrub server
by ladimafakher » Sun, 2018-07-01 00:50
0
1,059 by ladimafakher
Sun, 2018-07-01 00:50
Normal topic Ligand Binding
by KS Siddiqui » Thu, 2019-04-25 01:01
0
1,031 by KS Siddiqui
Thu, 2019-04-25 01:01
Normal topic Rosetta-Vienna RNP-ddG failed
by Athena Chu » Mon, 2022-04-18 18:21
0
218 by Athena Chu
Mon, 2022-04-18 18:21
Normal topic Running ROSIE from terminal
by sc19 » Thu, 2022-07-14 01:09
0
162 by sc19
Thu, 2022-07-14 01:09
Normal topic Erraser protocol now open to public
by Sergey » Wed, 2012-10-17 12:38
0
2,007 by Sergey
Mon, 2014-04-21 06:47
Normal topic ROSETTA design affinity optimization
by wentlewi » Mon, 2020-02-03 01:42
0
1,171 by wentlewi
Mon, 2020-02-03 01:42
Normal topic pKa app is now public!
by Sergey » Mon, 2014-03-10 15:47
0
3,494 by Sergey
Mon, 2014-03-10 15:47
Normal topic Results are NOT emailed
by alsayeghkn » Wed, 2022-03-23 08:55
0
232 by alsayeghkn
Wed, 2022-03-23 08:55
Normal topic I have jobs queued for nearly 1 month
by jessye » Thu, 2019-10-10 03:36
0
1,061 by jessye
Thu, 2019-10-10 03:36
Normal topic ROSIE pKa calculation issue
by lijum » Mon, 2020-06-15 12:12
0
911 by lijum
Mon, 2020-06-15 12:12
Normal topic Problem with ROSIE antibody modeling
by wildchipiron » Thu, 2016-04-14 20:00
0
1,621 by wildchipiron
Thu, 2016-04-14 20:00
Normal topic Multiple antibody jobs failed
by larae » Mon, 2022-09-12 09:54
0
133 by larae
Mon, 2022-09-12 09:54
Normal topic Sequence Tolerance broken links?
by dnamkr » Fri, 2021-10-22 11:34
0
418 by dnamkr
Fri, 2021-10-22 11:34
Normal topic Rosettadock Error
by jinfeng » Fri, 2022-11-18 20:39
0
192 by jinfeng
Fri, 2022-11-18 20:39
Normal topic account does not have verified academic email address
by haria256 » Sat, 2022-07-02 03:33
0
202 by haria256
Sat, 2022-07-02 03:33
Normal topic Antibody Job Failed
by aquilesms89 » Thu, 2020-08-13 08:50
0
1,111 by aquilesms89
Thu, 2020-08-13 08:50
Normal topic Correctly Formatting a PDB file for analysis of a Zinc Finger Motif
by rslack » Thu, 2022-04-28 18:19
0
222 by rslack
Thu, 2022-04-28 18:38
Normal topic Relax application before ROSIE
by mwinn99 » Wed, 2022-05-25 13:23
0
221 by mwinn99
Wed, 2022-05-25 13:23
Normal topic Ways to improve ROSIE docking2 jobs
by AdoCbl » Wed, 2015-09-23 15:12
0
1,563 by AdoCbl
Wed, 2015-09-23 15:12
Normal topic my status jobs been queued in such longer time
by Atirah » Fri, 2020-04-10 02:55
0
1,179 by Atirah
Fri, 2020-04-10 02:57
Normal topic Cancel / delete Rosie not working
by fglaser » Tue, 2015-07-07 01:14
0
1,624 by fglaser
Tue, 2015-07-07 01:14
Normal topic Transitioning from ROSIE to Rosetta
by AdoCbl » Wed, 2015-09-23 11:49
0
1,576 by AdoCbl
Wed, 2015-09-23 11:49
Normal topic "in_progress" decoy files in some docking2 local_docking job tar archives
by AdoCbl » Sun, 2015-10-18 13:47
1
2,448 by rmoretti
Sun, 2015-10-18 13:59
Normal topic Academic email
by ruuua » Wed, 2022-08-03 01:45
1
294 by Sergey
Thu, 2022-08-04 15:58
Normal topic Log in to rosie
by dnamkr » Tue, 2022-03-15 11:04
1
400 by Sergey
Tue, 2022-03-15 11:28
Normal topic error in peptiderive job result
by PRITAM » Wed, 2019-05-08 09:33
1
1,401 by rmoretti
Mon, 2019-06-24 12:30
Normal topic antibody modeling fail
by jessye » Tue, 2019-07-02 01:57
1
1,485 by rmoretti
Wed, 2019-07-10 09:09
Normal topic Cannot login ROSIE-2 (docking-3)
by Pdk089 » Mon, 2022-04-25 11:30
1
339 by Sergey
Mon, 2022-04-25 11:48
Normal topic Academic domain not listed
by benjv » Wed, 2022-05-25 10:31
1
309 by Sergey
Thu, 2022-05-26 10:23
Normal topic Docking results
by sujigeorge1979 » Wed, 2019-06-12 23:40
1
1,451 by jeliazkov
Mon, 2019-06-17 06:07
Normal topic chothia numbering error of FR_L1
by Sbrendle » Mon, 2016-08-22 06:58
1
2,132 by nmarze
Mon, 2016-08-22 11:57
Normal topic Academic E-mail address
by Valery Veresov » Wed, 2022-10-05 05:43
1
186 by rmoretti
Thu, 2022-10-06 09:18
Normal topic Antibody job failed
by larae » Fri, 2022-03-25 11:04
1
347 by rmoretti
Tue, 2022-03-29 15:14
Normal topic RMSD - Score
by LT » Thu, 2017-02-23 12:59
1
2,253 by rmoretti
Thu, 2017-02-23 13:03
Normal topic Academic Email Adress
by Konstantin » Sat, 2022-11-12 02:06
1
226 by rmoretti
Mon, 2022-11-14 07:21
Normal topic academic institution domain is not listed
by minzhi » Mon, 2022-05-16 14:26
1
317 by Sergey
Wed, 2022-05-18 14:05
Normal topic RMSD values for symmetric_docking clockwise vs counterclockwise cyclical outputs
by AdoCbl » Sun, 2015-10-18 12:49
1
2,435 by IAndre
Mon, 2015-10-19 01:19
Normal topic Academic email
by Timothius » Sun, 2022-07-24 15:51
1
264 by Sergey
Thu, 2022-07-28 14:28
Normal topic Cannot confirm registration to the Rosie site
by fglaser » Sun, 2013-10-13 02:52
1
9,369 by Sergey
Mon, 2014-04-21 06:48
Normal topic Problem in refinement job in Docking2
by aninditaseal » Fri, 2016-04-22 07:12
1
2,139 by Sergey
Fri, 2016-04-22 11:13
Normal topic academic_address
by Natalia » Fri, 2022-09-16 12:27
1
162 by rmoretti
Fri, 2022-09-16 13:50
Normal topic ddG_RNA final energy different when modeling WT sequence
by AlexLukasiewicz » Tue, 2022-01-25 14:41
1
415 by Ajlukasiewicz
Fri, 2022-09-09 12:24
Normal topic RMSD
by jessye » Tue, 2019-07-02 01:54
1
1,818 by rmoretti
Tue, 2019-07-09 09:49
Normal topic Academic domains list
by aozalevsky » Tue, 2022-05-24 09:24
1
298 by rmoretti
Wed, 2022-05-25 08:25
Normal topic Comparing Protein-Protein Docking interactions between WT and mutant proteins
by dflaher » Fri, 2017-11-03 06:18
1
2,052 by rmoretti
Fri, 2017-12-01 11:21
Normal topic academic email
by rhn » Wed, 2022-08-17 12:44
1
196 by Sergey
Thu, 2022-08-18 13:34
Normal topic Academic adress
by ErikRihtar » Sat, 2022-10-01 08:39
1
163 by Sergey
Mon, 2022-10-03 13:49
Normal topic download decoy structures as .tar file?
by deplazes » Fri, 2014-11-21 19:25
1
3,064 by Ashafix
Sat, 2014-11-29 07:00
Normal topic Academic Email Address
by cecii_xy » Tue, 2022-11-08 07:31
1
237 by Sergey
Tue, 2022-11-08 12:34
Normal topic free Energy Calculation?
by Sduenas » Thu, 2015-06-25 12:18
1
3,468 by rmoretti
Fri, 2015-07-03 11:56
Normal topic Rosie Docking Server-Energy function
by jsv » Fri, 2017-07-21 08:26
1
1,863 by ssrb
Fri, 2017-07-21 09:29
Normal topic Academic address not verified during rosie login
by pomden31 » Thu, 2022-05-26 10:04
1
292 by Sergey
Thu, 2022-05-26 10:21
Normal topic Academic email
by Morteza Ghandadi » Sun, 2022-07-17 00:36
1
240 by rmoretti
Mon, 2022-07-18 06:59
Normal topic Protein protein docking
by drrahulsuresh » Wed, 2018-05-02 12:52
1
1,873 by smlewis
Thu, 2018-05-03 11:45
Normal topic Failure in local docking
by Fei » Thu, 2014-06-26 12:24
1
2,808 by rmoretti
Tue, 2014-07-01 09:44
Normal topic Bound Ligand Protein-Protein Docking
by ajaniharesh » Mon, 2019-04-08 12:18
1
1,397 by rmoretti
Thu, 2019-05-09 13:38
Normal topic Nanobody prediction using ROSIE ?
by esozdemir » Thu, 2019-06-20 11:14
1
1,541 by rmoretti
Mon, 2019-06-24 12:02
Normal topic Academic address not verified during Rosie login
by schacherl » Fri, 2022-10-07 02:06
1
246 by Sergey
Fri, 2022-10-07 15:28
Normal topic Rosie server stuck??
by David Weis » Sun, 2017-03-05 13:37
1
2,041 by smlewis
Mon, 2017-03-06 08:58
Normal topic academic institution domain is not listed
by ruma99 » Tue, 2022-05-24 08:33
1
306 by Sergey
Tue, 2022-05-24 10:45
Normal topic Deleting ones "own" guest job a to reduce server load
by Protein fan » Thu, 2017-10-26 01:26
1
1,971 by rmoretti
Fri, 2017-12-01 11:24
Normal topic Let docking2 jobs list the scores for the input proteins.pdb file
by AdoCbl » Wed, 2015-09-23 12:24
1
2,424 by AdoCbl
Thu, 2015-09-24 11:38
Normal topic ROSIE antibody modeling- discontinuity in backbone
by wagnerek » Tue, 2015-10-27 10:18
1
2,416 by rmoretti
Wed, 2015-11-25 12:53
Normal topic SNUGDOCK
by harsh » Tue, 2018-10-09 23:58
1
1,712 by Sergey
Tue, 2018-10-16 15:52
Normal topic SnugDocking result interpretation
by jessye » Mon, 2019-05-27 03:43
1
1,471 by jeliazkov
Tue, 2019-05-28 13:36
Normal topic missing residues while Rosie Modeling
by jguan » Mon, 2014-08-11 06:56
1
4,005 by jadolfbr
Tue, 2014-10-21 08:46
Normal topic Support for local install of ROSIE?
by jjv5 » Mon, 2022-03-21 08:58
1
351 by Sergey
Mon, 2022-03-21 12:10
Normal topic FARFAR2 structure prediction give a circular RNA
by jitz » Thu, 2019-07-25 04:58
1
1,548 by everyday847
Mon, 2019-11-11 14:39
Normal topic Prepack step fail in docking2
by gretahultqvist » Thu, 2015-06-11 00:20
1
2,777 by rmoretti
Fri, 2015-07-03 12:14
Normal topic SNUGDOCK
by adva » Sun, 2017-07-16 00:46
1
1,767 by rmoretti
Mon, 2017-07-17 07:57
Normal topic Beta-Peptide Design Protocol now available for academic users
by Sergey » Wed, 2012-11-28 12:32
1
6,525 by jaw315
Thu, 2022-06-09 10:26
Normal topic SnugDock: chain_id H represents more than one chain
by tweetman » Wed, 2018-05-02 04:24
1
1,974 by sheehajh
Wed, 2018-05-02 06:38
Normal topic Docking two proteins with interfacing ligand
by luisalles » Tue, 2016-04-05 23:56
1
2,375 by rmoretti
Fri, 2016-04-29 09:27
Normal topic Academic Email
by Teo » Tue, 2022-09-06 08:42
1
183 by Sergey
Tue, 2022-09-06 11:10
Normal topic farfar2 error
by debostuti » Thu, 2021-10-07 23:10
1
585 by everyday847
Fri, 2021-10-08 10:29
Normal topic Snugdock versus Docking with an ensemble of protein conformations
by MIke Kent » Fri, 2019-03-29 10:07
1
1,520 by jeliazkov
Fri, 2019-03-29 10:34
Normal topic Rosie vip function fails on multiple tries
by Amy F » Sat, 2019-06-15 12:51
1
1,367 by rmoretti
Mon, 2019-06-24 12:20
Normal topic Rosetta Antibody
by Maryam_tabasinezhad » Sun, 2016-08-28 00:29
1
2,322 by smlewis
Sun, 2016-08-28 12:04
Normal topic Academic address not verified during Rosie login
by Jean-Etienne » Thu, 2022-10-06 22:49
1
178 by Sergey
Fri, 2022-10-07 15:26
Normal topic Error of non standard amino acid (SnugDock)
by bt13d072 » Wed, 2017-03-01 19:51
1
2,363 by rmoretti
Mon, 2017-03-06 09:14
Normal topic Academic domain not listed
by SKlab » Fri, 2022-05-20 12:03
1
284 by Sergey
Fri, 2022-05-20 12:14
Normal topic Compaing interface socre of different ligands with the same protein structure
by Caulobacter » Tue, 2019-12-10 12:53
1
1,304 by rmoretti
Tue, 2019-12-10 13:10
Normal topic Modeling Antibody Structure failed
by Sunyp_IM » Sun, 2017-08-06 02:59
1
2,086 by rmoretti
Mon, 2017-08-14 15:09
Normal topic Antibody scoring
by larae » Wed, 2022-06-22 11:14
1
260 by rmoretti
Wed, 2022-06-22 12:00
Normal topic CDR are not being recognized
by wildchipiron » Mon, 2016-05-23 15:03
2
3,065 by nmarze
Wed, 2016-05-25 14:54
Normal topic Output format
by Michele Tavanti » Sat, 2015-04-25 05:03
2
3,250 by Conan
Sat, 2015-04-25 11:31
Normal topic Academic address not verified during rosie login
by s.shankar » Thu, 2022-07-14 09:40
2
306 by s.shankar
Fri, 2022-07-15 12:31
Normal topic proteins.pdb: Not enough chains in submitted protein! [At least 2 chains should be present, found chains: [u'A']...]
by Loki01 » Mon, 2018-03-19 13:34
2
2,464 by Loki01
Mon, 2018-03-19 13:45
Normal topic 504 Gateway Time-out
by larae » Wed, 2022-08-31 03:38
2
217 by Sergey
Wed, 2022-08-31 09:12
Normal topic Stepwise error
by debostuti » Wed, 2021-10-06 08:57
2
620 by debostuti
Fri, 2021-10-08 00:29
Normal topic Does Snugdock remodeling of H3 loops include the kink constraint as in RosettaAntibody?
by MIke Kent » Wed, 2019-03-27 10:09
2
1,940 by MIke Kent
Thu, 2019-03-28 11:26
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