Rosetta Server
This is a general question,
Is there any example of proteins modeled by ROSETTA which is currently being used in industry, whether it is enzymes or therapeutics or any other biomolecules?
Thanks.
Hi everybody,
I have been succesfully used ROSIE for the generation of Ab Fab models, but now I am having problems with one of them and I don't really understand why.
In the output of ROSIE docking2 and symmetric_docking jobs,
many pdb files are shown as cartoons with rainbow coloring
and black backgrounds. Is it possible to have an option that
would change the background color of these images to white
and perhaps render these images with a thin black outline
around the cartoon shape? I think this would use less toner
when printing and yield clearer printouts. Also, could you
include these images in the tar archive one gets via the link
"[Download all job files as tar archive]" ?
Is there a way to change your ROSIE username or password?
http://rosie.rosettacommons.org/signup lets you set up a new account, and
http://rosie.rosettacommons.org/password_reset lets you change your password,
but the new password is chosen for you and sent to you in an e-mail,
which isn't the most private way to do things.
hi everyone,
I use the ROSIE server, and I want to know, how can I calculate the free energy in my new models of protein-protein docking?
thanks
Hello
I tried to submit a job to calculate residue pKa in the protein (http://rosie.graylab.jhu.edu/pka/submit)
But...
after input PDB file I clicked "Submit" and stopped at "Submitting pKa job...".
Is that caused by my data error ?
or, Is there a pKa application in the Rosseta 3.5 for standalone calculation?
Thanks for your help
Hello,
I have problems using the RNA Denovo protocol on the web server. I try to get a structure for a duplex RNA, with a bulge, and the calculations fail, giving the error message: Protocol failed to produce any results! (File output/protein-0.out not found!)
I am new to ROSIE (in fact new to Rosetta). I was able to submit some dockin runs and get the results. I want to download the 1000 decoy structures for doing my own post-docking analysis but I cant figure out how to download them as .tar / .zip file.
Hello,
I am doing a research internship, on modelling some antibodies recognizing a short peptide from a conserved part of the gp41 protein of the HIV1 virus and simulating their docking.
hey,
Is there a user friendly interface that i can work on my computer, similar to that on rosie server?
or the only option is to know how to program?
thx
Ron
